BQ623100

Overview
NameBQ623100
Unique NameBQ623100
TypeEST
OrganismCitrus sinensis (Sweet orange)
Sequence length465
Libraries
Library NameType
Ridge pineapple sweet orange entire seedlingcdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Alignments
Feature NameTypeLocationAnalysis
Csv1_Contig3659 contig Csv1_Contig3659:336..800. BLAST: Citrus Unigene V1 Contigs to Prunus persica proteins V1
Homology
[Close]
BLAST of BQ623100 vs. ExPASy Swiss-Prot
Match: UBIQ_ACECL (Ubiquitin OS=Acetabularia cliftonii PE=3 SV=1)

HSP 1 Score: 128.642 bits (322), Expect = 1.266e-29
Identity = 63/66 (95.45%), Postives = 66/66 (100.00%), Query Frame = 1 
Query:    1 KTITLEVESSDTIDNVKAKIQDKEGIPPDQQRLIFAGKQLEDGRTLADYNIQKESTLHLVLRLRGG 198
            KTITLEVESSDT++NVK+KIQDKEGIPPDQQRLIFAGKQLEDGRTLADYNIQKESTLHLVLRLRGG
Sbjct:   11 KTITLEVESSDTVENVKSKIQDKEGIPPDQQRLIFAGKQLEDGRTLADYNIQKESTLHLVLRLRGG 76
[Close]
BLAST of BQ623100 vs. ExPASy Swiss-Prot
Match: UBIQ_TRYCR (Ubiquitin OS=Trypanosoma cruzi PE=3 SV=1)

HSP 1 Score: 128.257 bits (321), Expect = 1.653e-29
Identity = 64/66 (96.97%), Postives = 65/66 (98.48%), Query Frame = 1 
Query:    1 KTITLEVESSDTIDNVKAKIQDKEGIPPDQQRLIFAGKQLEDGRTLADYNIQKESTLHLVLRLRGG 198
            KTI LEVESSDTI+NVKAKIQDKEGIPPDQQRLIFAGKQLEDGRTLADYNIQKESTLHLVLRLRGG
Sbjct:   11 KTIALEVESSDTIENVKAKIQDKEGIPPDQQRLIFAGKQLEDGRTLADYNIQKESTLHLVLRLRGG 76
[Close]
BLAST of BQ623100 vs. ExPASy Swiss-Prot
Match: UBIQ_ACACA (Ubiquitin OS=Acanthamoeba castellanii PE=3 SV=1)

HSP 1 Score: 128.257 bits (321), Expect = 1.653e-29
Identity = 64/66 (96.97%), Postives = 65/66 (98.48%), Query Frame = 1 
Query:    1 KTITLEVESSDTIDNVKAKIQDKEGIPPDQQRLIFAGKQLEDGRTLADYNIQKESTLHLVLRLRGG 198
            KTITLEVESSDTI+NVK KIQDKEGIPPDQQRLIFAGKQLEDGRTLADYNIQKESTLHLVLRLRGG
Sbjct:   11 KTITLEVESSDTIENVKQKIQDKEGIPPDQQRLIFAGKQLEDGRTLADYNIQKESTLHLVLRLRGG 76
[Close]
BLAST of BQ623100 vs. ExPASy Swiss-Prot
Match: UBIQ_GEOCY (Ubiquitin OS=Geodia cydonium PE=3 SV=1)

HSP 1 Score: 127.872 bits (320), Expect = 2.159e-29
Identity = 63/66 (95.45%), Postives = 66/66 (100.00%), Query Frame = 1 
Query:    1 KTITLEVESSDTIDNVKAKIQDKEGIPPDQQRLIFAGKQLEDGRTLADYNIQKESTLHLVLRLRGG 198
            KTITLEVE+SDTI+NVKAKIQDKEGIPPDQQRLIFAGKQLEDGRTL+DYNIQKESTLHLVLRLRGG
Sbjct:   11 KTITLEVEASDTIENVKAKIQDKEGIPPDQQRLIFAGKQLEDGRTLSDYNIQKESTLHLVLRLRGG 76
[Close]
BLAST of BQ623100 vs. ExPASy Swiss-Prot
Match: UBIQ_CAEEL (Ubiquitin OS=Caenorhabditis elegans GN=ubq-1 PE=1 SV=1)

HSP 1 Score: 127.872 bits (320), Expect = 2.159e-29
Identity = 63/66 (95.45%), Postives = 66/66 (100.00%), Query Frame = 1 
Query:    1 KTITLEVESSDTIDNVKAKIQDKEGIPPDQQRLIFAGKQLEDGRTLADYNIQKESTLHLVLRLRGG 198
            KTITLEVE+SDTI+NVKAKIQDKEGIPPDQQRLIFAGKQLEDGRTL+DYNIQKESTLHLVLRLRGG
Sbjct:   11 KTITLEVEASDTIENVKAKIQDKEGIPPDQQRLIFAGKQLEDGRTLSDYNIQKESTLHLVLRLRGG 76
[Close]
BLAST of BQ623100 vs. ExPASy Swiss-Prot
Match: UBIQ_EUPEU (Ubiquitin OS=Euplotes eurystomus PE=3 SV=1)

HSP 1 Score: 127.487 bits (319), Expect = 2.820e-29
Identity = 63/66 (95.45%), Postives = 64/66 (96.97%), Query Frame = 1 
Query:    1 KTITLEVESSDTIDNVKAKIQDKEGIPPDQQRLIFAGKQLEDGRTLADYNIQKESTLHLVLRLRGG 198
            KTITL+VE SDTIDNVK KIQDKEGIPPDQQRLIFAGKQLEDGRTLADYNIQKESTLHLVLRLRGG
Sbjct:   11 KTITLDVEQSDTIDNVKTKIQDKEGIPPDQQRLIFAGKQLEDGRTLADYNIQKESTLHLVLRLRGG 76
[Close]
BLAST of BQ623100 vs. ExPASy Swiss-Prot
Match: UBIQ_AGLNE (Ubiquitin OS=Aglaothamnion neglectum PE=3 SV=1)

HSP 1 Score: 127.487 bits (319), Expect = 2.820e-29
Identity = 63/66 (95.45%), Postives = 65/66 (98.48%), Query Frame = 1 
Query:    1 KTITLEVESSDTIDNVKAKIQDKEGIPPDQQRLIFAGKQLEDGRTLADYNIQKESTLHLVLRLRGG 198
            KTITLEVESSDTI+NVK KIQDKEGIPPDQQRLIFAGKQLEDGRTL+DYNIQKESTLHLVLRLRGG
Sbjct:   11 KTITLEVESSDTIENVKTKIQDKEGIPPDQQRLIFAGKQLEDGRTLSDYNIQKESTLHLVLRLRGG 76
[Close]
BLAST of BQ623100 vs. ExPASy Swiss-Prot
Match: UBIQ_XENLA (Ubiquitin OS=Xenopus laevis PE=1 SV=1)

HSP 1 Score: 127.102 bits (318), Expect = 3.683e-29
Identity = 63/66 (95.45%), Postives = 65/66 (98.48%), Query Frame = 1 
Query:    1 KTITLEVESSDTIDNVKAKIQDKEGIPPDQQRLIFAGKQLEDGRTLADYNIQKESTLHLVLRLRGG 198
            KTITLEVE SDTI+NVKAKIQDKEGIPPDQQRLIFAGKQLEDGRTL+DYNIQKESTLHLVLRLRGG
Sbjct:   11 KTITLEVEPSDTIENVKAKIQDKEGIPPDQQRLIFAGKQLEDGRTLSDYNIQKESTLHLVLRLRGG 76
[Close]
BLAST of BQ623100 vs. ExPASy Swiss-Prot
Match: UBIQ_SPOFR (Ubiquitin OS=Spodoptera frugiperda PE=3 SV=1)

HSP 1 Score: 127.102 bits (318), Expect = 3.683e-29
Identity = 63/66 (95.45%), Postives = 65/66 (98.48%), Query Frame = 1 
Query:    1 KTITLEVESSDTIDNVKAKIQDKEGIPPDQQRLIFAGKQLEDGRTLADYNIQKESTLHLVLRLRGG 198
            KTITLEVE SDTI+NVKAKIQDKEGIPPDQQRLIFAGKQLEDGRTL+DYNIQKESTLHLVLRLRGG
Sbjct:   11 KTITLEVEPSDTIENVKAKIQDKEGIPPDQQRLIFAGKQLEDGRTLSDYNIQKESTLHLVLRLRGG 76
[Close]
BLAST of BQ623100 vs. ExPASy Swiss-Prot
Match: UBIQ_RAT (Ubiquitin OS=Rattus norvegicus GN=Rps27a PE=1 SV=1)

HSP 1 Score: 127.102 bits (318), Expect = 3.683e-29
Identity = 63/66 (95.45%), Postives = 65/66 (98.48%), Query Frame = 1 
Query:    1 KTITLEVESSDTIDNVKAKIQDKEGIPPDQQRLIFAGKQLEDGRTLADYNIQKESTLHLVLRLRGG 198
            KTITLEVE SDTI+NVKAKIQDKEGIPPDQQRLIFAGKQLEDGRTL+DYNIQKESTLHLVLRLRGG
Sbjct:   11 KTITLEVEPSDTIENVKAKIQDKEGIPPDQQRLIFAGKQLEDGRTLSDYNIQKESTLHLVLRLRGG 76
The following BLAST results are available for this feature:
BLAST of BQ623100 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 92
Match NameE-valueIdentityDescription
UBIQ_ACECL1.266e-2995.45Ubiquitin OS=Acetabularia cliftonii PE=3 SV=1[more]
UBIQ_TRYCR1.653e-2996.97Ubiquitin OS=Trypanosoma cruzi PE=3 SV=1[more]
UBIQ_ACACA1.653e-2996.97Ubiquitin OS=Acanthamoeba castellanii PE=3 SV=1[more]
UBIQ_GEOCY2.159e-2995.45Ubiquitin OS=Geodia cydonium PE=3 SV=1[more]
UBIQ_CAEEL2.159e-2995.45Ubiquitin OS=Caenorhabditis elegans GN=ubq-1 PE=1 ... [more]
UBIQ_EUPEU2.820e-2995.45Ubiquitin OS=Euplotes eurystomus PE=3 SV=1[more]
UBIQ_AGLNE2.820e-2995.45Ubiquitin OS=Aglaothamnion neglectum PE=3 SV=1[more]
UBIQ_XENLA3.683e-2995.45Ubiquitin OS=Xenopus laevis PE=1 SV=1[more]
UBIQ_SPOFR3.683e-2995.45Ubiquitin OS=Spodoptera frugiperda PE=3 SV=1[more]
UBIQ_RAT3.683e-2995.45Ubiquitin OS=Rattus norvegicus GN=Rps27a PE=1 SV=1[more]

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Properties
Property NameValue
Genbank descriptionUSDA-FP_00191 Ridge pineapple sweet orange entire seedling Citrus sinensis cDNA clone USDA-FP_00191 5, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>BQ623100 ID=BQ623100; Name=BQ623100; organism=Citrus sinensis; type=EST; length=465bp
AAGACGATCACCCTGGAGGTGGAGAGCTCCGACACGATCGACAACGTGAA
GGCCAAGATCCAGGACAAAGAGGGGATTCCTCCGGACCAGCAGAGGCTCA
TCTTCGCCGGCAAGCAGCTCGAGGATGGCCGGACTCTCGCCGATTACAAC
ATTCAAAAGGAGTCCACTCTCCACCTTGTCCTCCGTCTCCGTGGTGGTGA
CTTCTAAAAAAATAAATGTGGATGTGTCCGCGTTTGATTGGATGGCGCTA
ATAATAATTAATTAGGTTGGATTGGGCGCTTTGCTTTAATTATTTTGTAA
TTACAATTGTGTAATGGCCAGCCGCTTGGGCCTAATTTCCTCTTTCTATT
GGTAATAATAATATAAGCACTAGTTTTTAAAAAAAAAAAAAAAAAAAAAA
AACTCTCGAAGCGCCTGCTGTCCTTGTTGTCCCCATCCATTCTGACCTTC
AAGCTTATTCAGCAT
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