BQ623100

Overview
NameBQ623100
Unique NameBQ623100
TypeEST
OrganismCitrus sinensis (Sweet orange)
Sequence length465
Libraries
Library NameType
Ridge pineapple sweet orange entire seedlingcdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Alignments
Feature NameTypeLocationAnalysis
Csv1_Contig3659 contig Csv1_Contig3659:336..800. BLAST: Citrus Unigene V1 Contigs to Prunus persica proteins V1
Homology
BLAST of BQ623100 vs. ExPASy Swiss-Prot
Match: UBIQ_LEIMA (Ubiquitin OS=Leishmania major GN=UB-EP52 PE=3 SV=1)

HSP 1 Score: 123.635 bits (309), Expect = 4.072e-28
Identity = 61/66 (92.42%), Postives = 64/66 (96.97%), Query Frame = 1
Query:    1 KTITLEVESSDTIDNVKAKIQDKEGIPPDQQRLIFAGKQLEDGRTLADYNIQKESTLHLVLRLRGG 198
            KTI LEVE SDTI+NVKAKIQDKEGIPPDQQRLIFAGKQLE+GRTL+DYNIQKESTLHLVLRLRGG
Sbjct:   11 KTIALEVEPSDTIENVKAKIQDKEGIPPDQQRLIFAGKQLEEGRTLSDYNIQKESTLHLVLRLRGG 76          
BLAST of BQ623100 vs. ExPASy Swiss-Prot
Match: UBIQ_LUMTE (Ubiquitin (Fragment) OS=Lumbricus terrestris PE=1 SV=2)

HSP 1 Score: 120.553 bits (301), Expect = 3.447e-27
Identity = 60/63 (95.24%), Postives = 62/63 (98.41%), Query Frame = 1
Query:    4 TITLEVESSDTIDNVKAKIQDKEGIPPDQQRLIFAGKQLEDGRTLADYNIQKESTLHLVLRLR 192
            TITLEVE SDTI+NVKAKIQDKEGIPPDQQRLIFAGKQLEDGRTL+DYNIQKESTLHLVLRLR
Sbjct:    1 TITLEVEPSDTIENVKAKIQDKEGIPPDQQRLIFAGKQLEDGRTLSDYNIQKESTLHLVLRLR 63          
BLAST of BQ623100 vs. ExPASy Swiss-Prot
Match: UBIQ_LEITA (Ubiquitin OS=Leishmania tarentolae GN=UB-EP52 PE=3 SV=1)

HSP 1 Score: 119.013 bits (297), Expect = 1.003e-26
Identity = 59/65 (90.77%), Postives = 62/65 (95.38%), Query Frame = 1
Query:    4 TITLEVESSDTIDNVKAKIQDKEGIPPDQQRLIFAGKQLEDGRTLADYNIQKESTLHLVLRLRGG 198
            TI LEVE SDTI+NVKAKIQDKEGIPPDQQRLIFA KQLE+GRTL+DYNIQKESTLHLVLRLRGG
Sbjct:   12 TIALEVEPSDTIENVKAKIQDKEGIPPDQQRLIFADKQLEEGRTLSDYNIQKESTLHLVLRLRGG 76          
BLAST of BQ623100 vs. ExPASy Swiss-Prot
Match: UBIL_NPVOP (Ubiquitin-like protein OS=Orgyia pseudotsugata multicapsid polyhedrosis virus GN=V-UBI PE=3 SV=1)

HSP 1 Score: 106.686 bits (265), Expect = 5.151e-23
Identity = 51/67 (76.12%), Postives = 58/67 (86.57%), Query Frame = 1
Query:    1 KTITLEVESSDTIDNVKAKIQDKEGIPPDQQRLIFAGKQLEDGRTLADYNIQKESTLHLVLRLRGGD 201
            KTIT+E E  DT+  VK KI DKEG+P DQQRLI+AGKQLED +TLADYNIQKESTLH+VLRLRGG+
Sbjct:   11 KTITVETEPGDTVGQVKQKIADKEGVPVDQQRLIYAGKQLEDAQTLADYNIQKESTLHMVLRLRGGN 77          
BLAST of BQ623100 vs. ExPASy Swiss-Prot
Match: UBIL_NPVAC (Ubiquitin-like protein OS=Autographa californica nuclear polyhedrosis virus GN=V-UBI PE=3 SV=2)

HSP 1 Score: 103.99 bits (258), Expect = 3.339e-22
Identity = 49/66 (74.24%), Postives = 58/66 (87.88%), Query Frame = 1
Query:    1 KTITLEVESSDTIDNVKAKIQDKEGIPPDQQRLIFAGKQLEDGRTLADYNIQKESTLHLVLRLRGG 198
            KTIT E E ++T+ ++K KI DKEG+P DQQRLIFAGKQLED +T+ADYNIQKESTLH+VLRLRGG
Sbjct:   11 KTITAETEPAETVADLKQKIADKEGVPVDQQRLIFAGKQLEDSKTMADYNIQKESTLHMVLRLRGG 76          
BLAST of BQ623100 vs. ExPASy Swiss-Prot
Match: NEDD8_DROME (NEDD8 OS=Drosophila melanogaster GN=Nedd8 PE=1 SV=1)

HSP 1 Score: 88.1965 bits (217), Expect = 1.896e-17
Identity = 38/67 (56.72%), Postives = 52/67 (77.61%), Query Frame = 1
Query:    1 KTITLEVESSDTIDNVKAKIQDKEGIPPDQQRLIFAGKQLEDGRTLADYNIQKESTLHLVLRLRGGD 201
            K I +++E +D +D +K ++++KEGIPP QQRLIF+GKQ+ D +T ADY +Q  S LHLVL LRGGD
Sbjct:   11 KEIEIDIEPTDKVDRIKERVEEKEGIPPQQQRLIFSGKQMNDDKTAADYKVQGGSVLHLVLALRGGD 77          
BLAST of BQ623100 vs. ExPASy Swiss-Prot
Match: RUB1_DESAN (NEDD8-like protein RUB1 OS=Deschampsia antarctica GN=RUB1 PE=2 SV=1)

HSP 1 Score: 87.8113 bits (216), Expect = 2.476e-17
Identity = 41/66 (62.12%), Postives = 52/66 (78.79%), Query Frame = 1
Query:    1 KTITLEVESSDTIDNVKAKIQDKEGIPPDQQRLIFAGKQLEDGRTLADYNIQKESTLHLVLRLRGG 198
            K I +++E +DTID VK ++++KEGIPP QQRLI+AGKQL D +T  DYNI+  S LHLVL LRGG
Sbjct:   11 KEIEIDIEPTDTIDRVKERVEEKEGIPPVQQRLIYAGKQLADDKTAKDYNIEGGSVLHLVLALRGG 76          
BLAST of BQ623100 vs. ExPASy Swiss-Prot
Match: RUB2_ORYSJ (NEDD8-like protein RUB2 OS=Oryza sativa subsp. japonica GN=RUB2 PE=3 SV=1)

HSP 1 Score: 87.4261 bits (215), Expect = 3.234e-17
Identity = 40/66 (60.61%), Postives = 52/66 (78.79%), Query Frame = 1
Query:    1 KTITLEVESSDTIDNVKAKIQDKEGIPPDQQRLIFAGKQLEDGRTLADYNIQKESTLHLVLRLRGG 198
            K I +++E +DTID +K ++++KEGIPP QQRLI+AGKQL D +T  DYNI+  S LHLVL LRGG
Sbjct:   11 KEIEIDIEPTDTIDRIKERVEEKEGIPPVQQRLIYAGKQLADDKTAKDYNIEGGSVLHLVLALRGG 76          
BLAST of BQ623100 vs. ExPASy Swiss-Prot
Match: RUB1_ORYSJ (NEDD8-like protein RUB1 OS=Oryza sativa subsp. japonica GN=RUB1 PE=3 SV=1)

HSP 1 Score: 87.4261 bits (215), Expect = 3.234e-17
Identity = 40/66 (60.61%), Postives = 52/66 (78.79%), Query Frame = 1
Query:    1 KTITLEVESSDTIDNVKAKIQDKEGIPPDQQRLIFAGKQLEDGRTLADYNIQKESTLHLVLRLRGG 198
            K I +++E +DTID +K ++++KEGIPP QQRLI+AGKQL D +T  DYNI+  S LHLVL LRGG
Sbjct:   11 KEIEIDIEPTDTIDRIKERVEEKEGIPPVQQRLIYAGKQLADDKTAKDYNIEGGSVLHLVLALRGG 76          
BLAST of BQ623100 vs. ExPASy Swiss-Prot
Match: RUB1_ARATH (NEDD8-like protein RUB1 OS=Arabidopsis thaliana GN=RUB1 PE=1 SV=2)

HSP 1 Score: 87.4261 bits (215), Expect = 3.234e-17
Identity = 40/66 (60.61%), Postives = 52/66 (78.79%), Query Frame = 1
Query:    1 KTITLEVESSDTIDNVKAKIQDKEGIPPDQQRLIFAGKQLEDGRTLADYNIQKESTLHLVLRLRGG 198
            K I +++E +DTID +K ++++KEGIPP QQRLI+AGKQL D +T  DYNI+  S LHLVL LRGG
Sbjct:   11 KEIEIDIEPTDTIDRIKERVEEKEGIPPVQQRLIYAGKQLADDKTAKDYNIEGGSVLHLVLALRGG 76          
The following BLAST results are available for this feature:
BLAST of BQ623100 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 92
Match NameE-valueIdentityDescription
UBIQ_LEIMA4.072e-2892.42Ubiquitin OS=Leishmania major GN=UB-EP52 PE=3 SV=1[more]
UBIQ_LUMTE3.447e-2795.24Ubiquitin (Fragment) OS=Lumbricus terrestris PE=1 ... [more]
UBIQ_LEITA1.003e-2690.77Ubiquitin OS=Leishmania tarentolae GN=UB-EP52 PE=3... [more]
UBIL_NPVOP5.151e-2376.12Ubiquitin-like protein OS=Orgyia pseudotsugata mul... [more]
UBIL_NPVAC3.339e-2274.24Ubiquitin-like protein OS=Autographa californica n... [more]
NEDD8_DROME1.896e-1756.72NEDD8 OS=Drosophila melanogaster GN=Nedd8 PE=1 SV=... [more]
RUB1_DESAN2.476e-1762.12NEDD8-like protein RUB1 OS=Deschampsia antarctica ... [more]
RUB2_ORYSJ3.234e-1760.61NEDD8-like protein RUB2 OS=Oryza sativa subsp. jap... [more]
RUB1_ORYSJ3.234e-1760.61NEDD8-like protein RUB1 OS=Oryza sativa subsp. jap... [more]
RUB1_ARATH3.234e-1760.61NEDD8-like protein RUB1 OS=Arabidopsis thaliana GN... [more]

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Properties
Property NameValue
Genbank descriptionUSDA-FP_00191 Ridge pineapple sweet orange entire seedling Citrus sinensis cDNA clone USDA-FP_00191 5, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>BQ623100 ID=BQ623100; Name=BQ623100; organism=Citrus sinensis; type=EST; length=465bp
AAGACGATCACCCTGGAGGTGGAGAGCTCCGACACGATCGACAACGTGAA
GGCCAAGATCCAGGACAAAGAGGGGATTCCTCCGGACCAGCAGAGGCTCA
TCTTCGCCGGCAAGCAGCTCGAGGATGGCCGGACTCTCGCCGATTACAAC
ATTCAAAAGGAGTCCACTCTCCACCTTGTCCTCCGTCTCCGTGGTGGTGA
CTTCTAAAAAAATAAATGTGGATGTGTCCGCGTTTGATTGGATGGCGCTA
ATAATAATTAATTAGGTTGGATTGGGCGCTTTGCTTTAATTATTTTGTAA
TTACAATTGTGTAATGGCCAGCCGCTTGGGCCTAATTTCCTCTTTCTATT
GGTAATAATAATATAAGCACTAGTTTTTAAAAAAAAAAAAAAAAAAAAAA
AACTCTCGAAGCGCCTGCTGTCCTTGTTGTCCCCATCCATTCTGACCTTC
AAGCTTATTCAGCAT
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