BQ623109

Overview
NameBQ623109
Unique NameBQ623109
TypeEST
OrganismCitrus sinensis (Sweet orange)
Sequence length454
Libraries
Library NameType
Ridge pineapple sweet orange entire seedlingcdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Alignments
Feature NameTypeLocationAnalysis
Csv1_Contig6249 contig Csv1_Contig6249:289..742. BLAST: Citrus Unigene V1 Contigs to Prunus persica proteins V1
Homology
BLAST of BQ623109 vs. ExPASy Swiss-Prot
Match: RBS_SYNP2 (Ribulose bisphosphate carboxylase small chain OS=Synechococcus sp. (strain ATCC 27264 / PCC 7002 / PR-6) GN=cbbS PE=3 SV=1)

HSP 1 Score: 80.4925 bits (197), Expect = 3.722e-15
Identity = 38/99 (38.38%), Postives = 59/99 (59.60%), Query Frame = 2
Query:    2 SDEALLKEINYLIRSGWIPCLEFELEKGWVYREHHKSPGYYDGRYWTMWKLPMYGCTDATQVLKEVGEVQKEYPHSFVRIIGFDNKRQVQCISFIAAKP 298
            SD+ + +++ Y++  G+IP +EFE  K      HH          WT+WKLP++  + A +VL EV E + EY   ++R++GFDN +Q Q +SFI  KP
Sbjct:   20 SDQQIARQVQYMMDQGYIPGIEFE--KDPTPELHH----------WTLWKLPLFNASSAQEVLNEVRECRSEYSDCYIRVVGFDNIKQCQTVSFIVYKP 106          
BLAST of BQ623109 vs. ExPASy Swiss-Prot
Match: RBS_ANASP (Ribulose bisphosphate carboxylase small chain OS=Anabaena sp. (strain PCC 7120) GN=cbbS PE=3 SV=1)

HSP 1 Score: 75.0998 bits (183), Expect = 1.564e-13
Identity = 34/99 (34.34%), Postives = 55/99 (55.56%), Query Frame = 2
Query:    2 SDEALLKEINYLIRSGWIPCLEFELEKGWVYREHHKSPGYYDGRYWTMWKLPMYGCTDATQVLKEVGEVQKEYPHSFVRIIGFDNKRQVQCISFIAAKP 298
            +D  + K++ Y++  G+IP +EF                     YWT+WKLP++G   + +VL EV   + +YP  ++R++GFDN +Q Q +SFI  KP
Sbjct:   20 TDVQIEKQVQYILSQGYIPAVEFN------------EVSEPTELYWTLWKLPLFGAKTSREVLAEVQSCRSQYPGHYIRVVGFDNIKQCQILSFIVHKP 106          
BLAST of BQ623109 vs. ExPASy Swiss-Prot
Match: RBS2_THIFE (Ribulose bisphosphate carboxylase small chain 2 OS=Thiobacillus ferrooxidans GN=cbbS2 PE=3 SV=1)

HSP 1 Score: 72.7886 bits (177), Expect = 7.760e-13
Identity = 34/93 (36.56%), Postives = 49/93 (52.69%), Query Frame = 2
Query:    8 EALLKEINYLIRSGWIPCLEFELEKGWVYREHHKSPGYYDGRYWTMWKLPMYGCTDATQVLKEVGEVQKEYPHSFVRIIGFDNKRQVQCISFI 286
            + + +++ Y++  GW P +E            H  P    G YW MWKLPM+G TD   +LKE     K  PH+ VRI+G+DN +Q Q  S +
Sbjct:   31 DEIRQQVAYIVSKGWNPAVE------------HTEPENAFGNYWYMWKLPMFGETDVDTILKEAERCHKRNPHNHVRIVGYDNFKQSQGTSLV 111          
BLAST of BQ623109 vs. ExPASy Swiss-Prot
Match: RBS_CYAPA (Ribulose bisphosphate carboxylase small chain OS=Cyanophora paradoxa GN=rbcS PE=3 SV=1)

HSP 1 Score: 70.8626 bits (172), Expect = 2.949e-12
Identity = 28/99 (28.28%), Postives = 57/99 (57.58%), Query Frame = 2
Query:    2 SDEALLKEINYLIRSGWIPCLEFELEKGWVYREHHKSPGYYDGRYWTMWKLPMYGCTDATQVLKEVGEVQKEYPHSFVRIIGFDNKRQVQCISFIAAKP 298
            +D+ + +++ Y + +G+ P +EF               G  +   WT+WKLP++G     +VL E+   ++++P++++R++ FD+ RQVQ + F+  KP
Sbjct:   19 NDQQIARQLQYALSNGYSPAIEFSFT------------GKAEDLVWTLWKLPLFGAQSPEEVLSEIQACKQQFPNAYIRVVAFDSIRQVQTLMFLVYKP 105          
BLAST of BQ623109 vs. ExPASy Swiss-Prot
Match: RBS2_HYDMR (Ribulose bisphosphate carboxylase small chain 2 OS=Hydrogenovibrio marinus GN=cbbS-2 PE=1 SV=1)

HSP 1 Score: 70.4774 bits (171), Expect = 3.851e-12
Identity = 33/92 (35.87%), Postives = 48/92 (52.17%), Query Frame = 2
Query:    8 EALLKEINYLIRSGWIPCLEFELEKGWVYREHHKSPGYYDGRYWTMWKLPMYGCTDATQVLKEVGEVQKEYPHSFVRIIGFDNKRQVQCISF 283
            + +  +I Y+I  GW P LE            H++P      YW MWKLPM+G  D   VL E+ + +  YP+  +R+IG+DN  Q Q  +F
Sbjct:   26 DEIYDQIVYIINQGWTPALE------------HEAPEAASSHYWGMWKLPMFGTRDPNAVLAEIDQCRAAYPNHMIRLIGYDNYTQCQGHNF 105          
BLAST of BQ623109 vs. ExPASy Swiss-Prot
Match: RBS_PSEHY (Ribulose bisphosphate carboxylase small chain OS=Pseudomonas hydrogenothermophila GN=cbbS PE=3 SV=1)

HSP 1 Score: 68.9366 bits (167), Expect = 1.121e-11
Identity = 32/99 (32.32%), Postives = 52/99 (52.53%), Query Frame = 2
Query:    2 SDEALLKEINYLIRSGWIPCLEFELEKGWVYREHHKSPGYYDGRYWTMWKLPMYGCTDATQVLKEVGEVQKEYPHSFVRIIGFDNKRQVQCISFIAAKP 298
            S E + K+I Y++  GW P +E            H  P      YW MWKLPM+G TD  +++ E+   ++  P+  +++IG+DN RQ Q  + +  +P
Sbjct:   36 SAEEIRKQIEYIVSKGWNPAIE------------HCEPENAILHYWYMWKLPMFGETDVDKIIAEIEACKRSNPNHLIKLIGYDNIRQTQGTAMLVYRP 122          
BLAST of BQ623109 vs. ExPASy Swiss-Prot
Match: RBS1_CHRVI (Ribulose bisphosphate carboxylase small chain 1 OS=Chromatium vinosum GN=cbbS1 PE=1 SV=4)

HSP 1 Score: 68.1662 bits (165), Expect = 1.911e-11
Identity = 32/86 (37.21%), Postives = 45/86 (52.33%), Query Frame = 2
Query:    8 EALLKEINYLIRSGWIPCLEFELEKGWVYREHHKSPGYYDGRYWTMWKLPMYGCTDATQVLKEVGEVQKEYPHSFVRIIGFDNKRQ 265
            + + K++ Y++  GW P +E            H  P      YW MWKLPM+G TD   +LKE     K +P++ VR+IGFDN  Q
Sbjct:   31 DRIRKQVEYIVSKGWNPAIE------------HTEPENAFDHYWYMWKLPMFGETDIDTILKEAEACHKAHPNNHVRLIGFDNYAQ 104          
BLAST of BQ623109 vs. ExPASy Swiss-Prot
Match: RBS_ALVHS (Ribulose bisphosphate carboxylase small chain OS=Alvinoconcha hessleri symbiotic bacterium GN=cbbS PE=3 SV=1)

HSP 1 Score: 67.0106 bits (162), Expect = 4.258e-11
Identity = 33/98 (33.67%), Postives = 47/98 (47.96%), Query Frame = 2
Query:    8 EALLKEINYLIRSGWIPCLEFELEKGWVYREHHKSPGYYDGRYWTMWKLPMYGCTDATQVLKEVGEVQKEYPHSFVRIIGFDNKRQVQCISFIAAKPP 301
            E + K++ Y++  GW P +E            H  P      YW MWKLPM+G TD   +L E     K +P   VR+IG+DN  Q Q  + +  + P
Sbjct:   31 EKIRKQVEYIVSKGWNPAVE------------HTEPENAFDHYWYMWKLPMFGETDVDAILAEAEACHKAHPSHHVRLIGYDNYAQSQGTAMVIFRGP 116          
BLAST of BQ623109 vs. ExPASy Swiss-Prot
Match: RBS_THIDA (Ribulose bisphosphate carboxylase small chain OS=Thiobacillus denitrificans (strain ATCC 25259) GN=cbbS PE=3 SV=1)

HSP 1 Score: 65.855 bits (159), Expect = 9.486e-11
Identity = 31/84 (36.90%), Postives = 44/84 (52.38%), Query Frame = 2
Query:   20 KEINYLIRSGWIPCLEFELEKGWVYREHHKSPGYYDGRYWTMWKLPMYGCTDATQVLKEVGEVQKEYPHSFVRIIGFDNKRQVQ 271
            K++ YL+  GW P +E            H  P +    YW MWKLPM+G TD  ++L E     K  P++ VR++G+DN  Q Q
Sbjct:   35 KQVEYLVSKGWNPAIE------------HTEPEHLMDSYWYMWKLPMFGETDIDRILGEAEACHKANPNNHVRLVGYDNFAQSQ 106          
BLAST of BQ623109 vs. ExPASy Swiss-Prot
Match: RBS1_HYDMR (Ribulose bisphosphate carboxylase small chain 1 OS=Hydrogenovibrio marinus GN=cbbS-1 PE=1 SV=1)

HSP 1 Score: 65.855 bits (159), Expect = 9.486e-11
Identity = 34/83 (40.96%), Postives = 43/83 (51.81%), Query Frame = 2
Query:   23 EINYLIRSGWIPCLEFELEKGWVYREHHKSPGYYDGRYWTMWKLPMYGCTDATQVLKEVGEVQKEYPHSFVRIIGFDNKRQVQ 271
            ++ Y+I  GW P +E            H  P      YW MWKLPM+G TDA  VL EV    K  P++ VR+IG+DN  Q Q
Sbjct:   36 QVEYIISKGWNPAIE------------HSEPENAFSYYWYMWKLPMFGDTDANVVLAEVDACIKANPNNHVRLIGYDNYAQSQ 106          
The following BLAST results are available for this feature:
BLAST of BQ623109 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 120
Match NameE-valueIdentityDescription
RBS_SYNP23.722e-1538.38Ribulose bisphosphate carboxylase small chain OS=S... [more]
RBS_ANASP1.564e-1334.34Ribulose bisphosphate carboxylase small chain OS=A... [more]
RBS2_THIFE7.760e-1336.56Ribulose bisphosphate carboxylase small chain 2 OS... [more]
RBS_CYAPA2.949e-1228.28Ribulose bisphosphate carboxylase small chain OS=C... [more]
RBS2_HYDMR3.851e-1235.87Ribulose bisphosphate carboxylase small chain 2 OS... [more]
RBS_PSEHY1.121e-1132.32Ribulose bisphosphate carboxylase small chain OS=P... [more]
RBS1_CHRVI1.911e-1137.21Ribulose bisphosphate carboxylase small chain 1 OS... [more]
RBS_ALVHS4.258e-1133.67Ribulose bisphosphate carboxylase small chain OS=A... [more]
RBS_THIDA9.486e-1136.90Ribulose bisphosphate carboxylase small chain OS=T... [more]
RBS1_HYDMR9.486e-1140.96Ribulose bisphosphate carboxylase small chain 1 OS... [more]

Pages

back to top
Properties
Property NameValue
Genbank descriptionUSDA-FP_00200 Ridge pineapple sweet orange entire seedling Citrus sinensis cDNA clone USDA-FP_00200 5, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>BQ623109 ID=BQ623109; Name=BQ623109; organism=Citrus sinensis; type=EST; length=454bp
GTCCGATGAAGCTTTGCTCAAGGAAATCAATTACCTTATCCGCTCCGGCT
GGATTCCCTGCTTGGAATTCGAGTTGGAGAAAGGATGGGTGTACCGTGAG
CACCACAAGTCACCAGGATACTACGATGGACGCTACTGGACAATGTGGAA
GCTGCCCATGTATGGGTGCACAGATGCAACCCAGGTTTTGAAGGAGGTTG
GGGAGGTCCAGAAGGAATACCCACATTCATTCGTCCGAATTATCGGATTT
GACAACAAGCGTCAAGTGCAGTGCATCAGTTTCATTGCTGCCAAGCCACC
AGGCGTCTAGGTTCCCAATTAAATTTATGTAACCACCCATGCAATATTGT
TGATTATTATTATGTGTAACCCCCATAATGATCATTCGATCAATGGGGGT
TCGGTTTGCGTTTAATTTGTACTTAGGCTGCTGTTGCTGCTGCTCAAACT
TTTT
back to top