BQ623186

Overview
NameBQ623186
Unique NameBQ623186
TypeEST
OrganismCitrus sinensis (Sweet orange)
Sequence length610
Libraries
Library NameType
Ridge pineapple sweet orange entire seedlingcdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Alignments
Feature NameTypeLocationAnalysis
Csv1_Contig12 contig Csv1_Contig12:1..610. BLAST: Citrus Unigene V1 Contigs to Prunus persica proteins V1
Homology
BLAST of BQ623186 vs. ExPASy Swiss-Prot
Match: RACL_DICDI (Rho-related protein racL OS=Dictyostelium discoideum GN=racL PE=3 SV=1)

HSP 1 Score: 143.28 bits (360), Expect = 9.262e-34
Identity = 80/176 (45.45%), Postives = 108/176 (61.36%), Query Frame = 3
Query:   93 RLACVISYTSNTFPTDYVPTVFDNFSANVVVDGSTVNLGLWDTAGQEDYNRLRPLSYRGADVFLLAFSLISKASYENVAKKWIPELRHYAPG-VPIILVGTKLDLRDDK---QFLADHPGAVPITTAQGEELRKLIGAPVYIECSSKTQQNVKAVFDAAIKVVLQPPKNTKKKKRR 608
            + + +I++ S  FP DY PTVFDNFS   +      NLGL+DTAGQED++RLRPL Y   D+FL+ +S+I+  SY NV  KW  E++ Y    +P+ILVGT+ DLR DK   + LA    A PI+  +G  +RK IGA  + ECS  + +NVK VF+ AIKV         K K +
Sbjct:   16 KTSLLIAFASGEFPRDYQPTVFDNFSTLYMFQNKAYNLGLFDTAGQEDFDRLRPLGYNDTDLFLICYSVINPPSYANVYDKWYSEIKLYTGSEIPLILVGTQNDLRHDKATRETLALKQQA-PISYEEGMMMRKRIGAKAFTECSVVSGKNVKQVFEEAIKVYQDRQIEISKSKEK 190          
BLAST of BQ623186 vs. ExPASy Swiss-Prot
Match: RHO2_SCHPO (GTP-binding protein rho2 OS=Schizosaccharomyces pombe GN=rho2 PE=1 SV=1)

HSP 1 Score: 137.117 bits (344), Expect = 1.106e-33
Identity = 72/155 (46.45%), Postives = 96/155 (61.94%), Query Frame = 3
Query:  114 YTSNTFPTDYVPTVFDNFSANVVVDGSTVNLGLWDTAGQEDYNRLRPLSYRGADVFLLAFSLISKASYENVAKKWIPELRHYAPGVPIILVGTKLDLRDDKQFLAD--HPGAVPITTAQGEELRKLIGAPVYIECSSKTQQNVKAVFDAAIKVVL 572
            +T   FPT+YVPTVF+N+ ++  VDG +V L LWDTAGQE+Y RLRP+SY  A + L+ F++ S  S ENV+ KWI E+    P VP ILVG K DLR D   + +        + + Q E + + IGA  Y+ECSS T   V  VF+AA +  L
Sbjct:   28 FTLGYFPTEYVPTVFENYVSDCRVDGKSVQLALWDTAGQEEYERLRPMSYAKAHIILVGFAIDSPDSLENVSTKWIEEINTLCPNVPFILVGMKADLRSDPVAIEEMRRRNQNFVKSQQAELVAQRIGARKYMECSSLTGDGVDDVFEAATRAAL 182          

HSP 2 Score: 25.7942 bits (55), Expect = 1.106e-33
Identity = 12/25 (48.00%), Postives = 14/25 (56.00%), Query Frame = 2
Query:   59 KCVTVGDGAVGKTCMRHFLHQQHFP 133
            K V VGDGA GKT +       +FP
Sbjct:   10 KLVVVGDGACGKTSLLSVFTLGYFP 34          
BLAST of BQ623186 vs. ExPASy Swiss-Prot
Match: RHOD_HUMAN (Rho-related GTP-binding protein RhoD OS=Homo sapiens GN=RHOD PE=1 SV=2)

HSP 1 Score: 142.895 bits (359), Expect = 1.210e-33
Identity = 68/162 (41.98%), Postives = 99/162 (61.11%), Query Frame = 3
Query:   93 RLACVISYTSNTFPTDYVPTVFDNFSANVVVDGSTVNLGLWDTAGQEDYNRLRPLSYRGADVFLLAFSLISKASYENVAKKWIPELRHYAPGVPIILVGTKLDLRDDKQFL--ADHPGAVPITTAQGEELRKLIGAPVYIECSSKTQQNVKAVFDAAIKVVL 572
            + + ++ +    FP  Y PTVF+ +  N+ V G  V+L +WDTAGQ+DY+RLRPL Y  A V LL F + S  S++N+  +W PE+ H+   VPII+VG K DL  DK  +      G  P+T  +G+E+ + +GA  Y+ECS++   NV AVF  A +V L
Sbjct:   30 KTSLLMVFADGAFPESYTPTVFERYMVNLQVKGKPVHLHIWDTAGQDDYDRLRPLFYPDASVLLLCFDVTSPNSFDNIFNRWYPEVNHFCKKVPIIVVGCKTDLCKDKSLVNKLRRNGLEPVTYHRGQEMARSVGAVAYLECSARLHDNVHAVFQEAAEVAL 191          
BLAST of BQ623186 vs. ExPASy Swiss-Prot
Match: RHO4_SCHPO (GTP-binding protein rho4 OS=Schizosaccharomyces pombe GN=rho4 PE=1 SV=2)

HSP 1 Score: 139.428 bits (350), Expect = 1.337e-32
Identity = 71/169 (42.01%), Postives = 103/169 (60.95%), Query Frame = 3
Query:  105 VISYTSNTFPTDYVPTVFDNFSANVVV--DGSTVNLGLWDTAGQEDYNRLRPLSYRGADVFLLAFSLISKASYENVAKKWIPELRHYAPGVPIILVGTKLDLRDDKQF--LADHPGAVPITTAQGEELRKLIGAPVYIECSSKTQQNVKAVFDAAIKVVLQPPKNTKKK 599
            +I ++S TFP  YVPTVF+N+  ++    +   + L LWDTAGQE+Y+RLRPLSY  ++V LL FS+   AS  NV +KW PE++H+ P  PI+LVG K DLR D+    +    G  P+T  Q + +   + AP Y+ECS+K    V  VF  A+ + ++   +  KK
Sbjct:   31 LIVFSSGTFPERYVPTVFENYITDITYGPNSKVIELALWDTAGQEEYDRLRPLSYPNSNVILLCFSIDCPASLNNVTEKWYPEVQHFCPRTPIVLVGLKADLRKDRNATEVLRTQGLTPVTYQQAQSVALSMNAP-YVECSAKENTGVNEVFQLAVGLTIKKSFSFSKK 198          
BLAST of BQ623186 vs. ExPASy Swiss-Prot
Match: RHOC_EMENI (GTP-binding protein rhoC OS=Emericella nidulans GN=rhoC PE=3 SV=2)

HSP 1 Score: 137.117 bits (344), Expect = 6.637e-32
Identity = 73/160 (45.62%), Postives = 97/160 (60.62%), Query Frame = 3
Query:  105 VISYTSNTFPTDYVPTVFDNFSANVVV--DGSTVNLGLWDTAGQEDYNRLRPLSYRGADVFLLAFSLISKASYENVAKKWIPELRHYAPGVPIILVGTKLDLRDDKQF--LADHPGAVPITTAQGEELRKLIGAPVYIECSSKTQQNVKAVFDAAIKVVL 572
            +ISY+   FP  YVPTVF+N+    +    G TV L LWDTAGQE+Y+RLRPLSY   D+  + F++   AS ENV  KW PE+ H+ P  PIILVG K DLR+ +    L    G  P+T  QG+ +   + A  Y+ECSSK  + V +VF  A+  V+
Sbjct:   86 LISYSQGYFPEKYVPTVFENYITQTLHRRSGKTVELALWDTAGQEEYDRLRPLSYPETDLLFVCFAIDCPASLENVMDKWYPEVLHFCPTTPIILVGLKSDLRNKRTCIELLKTQGLTPVTPEQGQAVAGRMNAS-YVECSSKEMRGVDSVFQLAVDTVV 244          
BLAST of BQ623186 vs. ExPASy Swiss-Prot
Match: CDC42_COLGL (Cell division control protein 42 homolog OS=Colletotrichum gloeosporioides GN=CDC42 PE=3 SV=1)

HSP 1 Score: 136.346 bits (342), Expect = 1.132e-31
Identity = 77/172 (44.77%), Postives = 106/172 (61.63%), Query Frame = 3
Query:  105 VISYTSNTFPTDYVPTVFDNFSANVVVDGSTVNLGLWDTAGQEDYNRLRPLSYRGADVFLLAFSLISKASYENVAKKWIPELRHYAPGVPIILV-----GTKLDLRDDKQFLADHPGAVPITTAQGEELRKLIGAPVYIECSSKTQQNVKAVFDAAIKVVLQPPKNTKKKKR 605
            +ISYT+N FP++YVPTVFDN++  V++      LGL+DTAGQEDY+RLRPLSY   DVFL+ FS+ S AS+ENVA+          PGV +I+      G+ +  +  KQ ++      P+    GE + K +GA  Y+ECS+ TQ  +K VFD AI   L+PP   KK  +
Sbjct:   22 LISYTTNKFPSEYVPTVFDNYAVTVMIGDEPYTLGLFDTAGQEDYDRLRPLSYPQTDVFLVCFSVTSPASFENVARSG-SRGTSPLPGVLLIVAPVTERGSSVREKLSKQKMS------PVRKEDGERMAKDLGAVKYVECSALTQFKLKDVFDEAIVAALEPPAPKKKSHK 186          
BLAST of BQ623186 vs. ExPASy Swiss-Prot
Match: RHO5_YEAST (GTP-binding protein RHO5 OS=Saccharomyces cerevisiae GN=RHO5 PE=1 SV=2)

HSP 1 Score: 135.576 bits (340), Expect = 1.931e-31
Identity = 77/212 (36.32%), Postives = 112/212 (52.83%), Query Frame = 3
Query:   93 RLACVISYTSNTFPTDYVPTVFDNFSANVVVDGSTVN------------------------------LGLWDTAGQEDYNRLRPLSYRGADVFLLAFSLISKASYENVAKKWIPELRHYA-----------PGVPIILVGTKLDLRDD--KQFLADHPGAVPITTAQGEELRKLIGAPVYIECSSKTQQNVKAVFDAAIKVVLQPPKNTKKK 599
            + + +ISYT+N+FPTDYVPTVFDN+S  + +   T +                              + LWDTAGQEDY+RLRPL Y   D+FL+ FS+   AS+ NV +KW+PEL+  +              PI+LVGTK DLRDD   Q       +  ++  + +EL +  G   Y ECS+ TQ  V+ VF+ A++  +  P++  +K
Sbjct:   16 KTSLLISYTTNSFPTDYVPTVFDNYSTTIAIPNGTASSPLELDNGNDKRGSLSSASSSPSTDRKLYKINLWDTAGQEDYDRLRPLCYPQTDIFLICFSVSEHASFANVTEKWLPELKQTSNIEGTSLYTKLGKYPILLVGTKSDLRDDPATQKKLQEANSDYVSQEEIDELVQRCGFMGYTECSAATQAGVREVFEQAVRYAIYEPESPNQK 227          
BLAST of BQ623186 vs. ExPASy Swiss-Prot
Match: CRL1_CANAL (GTP-binding RHO-like protein OS=Candida albicans GN=CRL1 PE=3 SV=1)

HSP 1 Score: 134.42 bits (337), Expect = 4.302e-31
Identity = 72/153 (47.06%), Postives = 97/153 (63.40%), Query Frame = 3
Query:  105 VISYTSNTFPTDYVPTVFDNFSANVVV-DGSTVNLGLWDTAGQEDYNRLRPLSYRGADVFLLAFSLISKASYENVAKKWIPELRHYAPGVPIILVGTKLDLRDDKQFLADHPGAVPITTAQGEELRKLIGAPVYIECSSKTQQNVKAVFDAAI 560
            +++YT N FP+ YVPTVF+N+   V   +G TV L LWDTAGQE+Y+RLRPLSY   D+ L+ F++ ++ S ENV   W PE+ HY PG+PIILVGTK DL  D     +H  ++ +         K IGA   I  S+KT  NV+ VF+ A+
Sbjct:   92 LLAYTQNKFPSIYVPTVFENYVTAVQSPNGKTVELALWDTAGQEEYDRLRPLSYPDVDILLVCFAVDNEVSLENVKDMWFPEVNHYCPGIPIILVGTKSDLLSD----MNHDASIRVA--------KEIGAIGLIFTSAKTMFNVRTVFNFAL 232          
BLAST of BQ623186 vs. ExPASy Swiss-Prot
Match: RHO3_SCHPO (GTP-binding protein rho3 OS=Schizosaccharomyces pombe GN=rho3 PE=1 SV=2)

HSP 1 Score: 126.331 bits (316), Expect = 1.062e-30
Identity = 66/161 (40.99%), Postives = 95/161 (59.01%), Query Frame = 3
Query:  114 YTSNTFPTDYVPTVFDNFSANVVVDGSTVNLGLWDTAGQEDYNRLRPLSYRGADVFLLAFSLISKASYENVAKKWIPELRHYAPGVPIILVGTKLDLRDDKQFLADHPGAVPITTAQGEELRKLIGAPVYIECSSKTQQNVKAVFDAAIKVVL-QPPKNTK 593
            +T   FP  Y PT+F+N+  ++ VDG+++ L LWDTAGQE+Y++LR LSY    V ++ F++ S+ S ENV  KW+PE+    PGV ++LV  K DLR   +   DH  +  I   +G    K I A  Y+ECS+K  + V   F  A +V L   P+ TK
Sbjct:   33 FTKGYFPQVYEPTIFENYIHDIFVDGNSIELSLWDTAGQEEYDQLRSLSYSDTHVIMICFAVDSRDSLENVITKWLPEVSSNCPGVKLVLVALKCDLRGADEEQVDH--SKIIDYEEGLAAAKKINAVRYLECSAKLNRGVNEAFTEAARVALAAQPRGTK 191          

HSP 2 Score: 26.5646 bits (57), Expect = 1.062e-30
Identity = 11/25 (44.00%), Postives = 16/25 (64.00%), Query Frame = 2
Query:   59 KCVTVGDGAVGKTCMRHFLHQQHFP 133
            K V +GDGA GKT + +   + +FP
Sbjct:   15 KIVILGDGAAGKTSLLNVFTKGYFP 39          
BLAST of BQ623186 vs. ExPASy Swiss-Prot
Match: RHO2_YEAST (GTP-binding protein RHO2 OS=Saccharomyces cerevisiae GN=RHO2 PE=1 SV=2)

HSP 1 Score: 123.635 bits (309), Expect = 1.145e-29
Identity = 67/154 (43.51%), Postives = 90/154 (58.44%), Query Frame = 3
Query:  114 YTSNTFPTDYVPTVFDNFSANVVVDGSTVNLGLWDTAGQEDYNRLRPLSYRGADVFLLAFSLISKASYENVAKKWIPELRHYAPGVPIILVGTKLDLRDDKQFLADHPG-AVPITTAQGEELRKLIGAPVYIECSSKTQQNVKAVFDAAIKVVL 572
            +T   FP  Y PTVF+N+  +  VDG  V+L LWDTAGQE+Y RLRP SY  AD+ L+ F++ +  S  N   KW  E   Y P  PI+LVG K DLR +  F  +     VPI  A  +++ + IGA  Y+ECS+ T + V  VF+ A +  L
Sbjct:   27 FTLGKFPEQYHPTVFENYVTDCRVDGIKVSLTLWDTAGQEEYERLRPFSYSKADIILIGFAVDNFESLINARTKWADEALRYCPDAPIVLVGLKKDLRQEAHFKENATDEMVPIEDA--KQVARAIGAKKYMECSALTGEGVDDVFEVATRTSL 178          

HSP 2 Score: 25.7942 bits (55), Expect = 1.145e-29
Identity = 11/26 (42.31%), Postives = 15/26 (57.69%), Query Frame = 2
Query:   59 KCVTVGDGAVGKTCMRHFLHQQHFPD 136
            K V +GDGA GKT + +      FP+
Sbjct:    9 KLVIIGDGACGKTSLLYVFTLGKFPE 34          
The following BLAST results are available for this feature:
BLAST of BQ623186 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 500
Match NameE-valueIdentityDescription
RACL_DICDI9.262e-3445.45Rho-related protein racL OS=Dictyostelium discoide... [more]
RHO2_SCHPO1.106e-3346.45GTP-binding protein rho2 OS=Schizosaccharomyces po... [more]
RHOD_HUMAN1.210e-3341.98Rho-related GTP-binding protein RhoD OS=Homo sapie... [more]
RHO4_SCHPO1.337e-3242.01GTP-binding protein rho4 OS=Schizosaccharomyces po... [more]
RHOC_EMENI6.637e-3245.63GTP-binding protein rhoC OS=Emericella nidulans GN... [more]
CDC42_COLGL1.132e-3144.77Cell division control protein 42 homolog OS=Collet... [more]
RHO5_YEAST1.931e-3136.32GTP-binding protein RHO5 OS=Saccharomyces cerevisi... [more]
CRL1_CANAL4.302e-3147.06GTP-binding RHO-like protein OS=Candida albicans G... [more]
RHO3_SCHPO1.062e-3040.99GTP-binding protein rho3 OS=Schizosaccharomyces po... [more]
RHO2_YEAST1.145e-2943.51GTP-binding protein RHO2 OS=Saccharomyces cerevisi... [more]

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Properties
Property NameValue
Genbank descriptionUSDA-FP_00277 Ridge pineapple sweet orange entire seedling Citrus sinensis cDNA clone USDA-FP_00277 5, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>BQ623186 ID=BQ623186; Name=BQ623186; organism=Citrus sinensis; type=EST; length=610bp
GTAATAAAGATACTGTCTTAAGTGCACGTGGCGCGAGATGAGTGCATCGA
GGTTCATAAAGTGCGTGACGGTCGGTGACGGCGCCGTCGGCAAGACTTGC
ATGCGTCATTTCTTACACCAGCAACACTTTCCCGACGGATTATGTGCCAA
CAGTATTTGACAATTTCAGTGCAAATGTGGTAGTGGATGGAAGCACTGTT
AATCTTGGGTTGTGGGACACTGCAGGCCAGGAAGATTACAATAGACTAAG
ACCATTGAGCTACCGCGGGGCAGATGTCTTCTTACTCGCATTCTCTCTCA
TTAGCAAGGCCAGCTATGAAAATGTTGCTAAGAAATGGATTCCTGAGTTG
AGGCATTATGCACCTGGTGTTCCAATAATTCTTGTCGGGACGAAGCTCGA
TCTTCGGGATGATAAGCAGTTCCTTGCAGATCACCCTGGTGCAGTGCCAA
TTACCACGGCCCAAGGGGAGGAATTGAGAAAGTTGATAGGTGCTCCTGTT
TACATTGAGTGTAGTTCCAAAACACAACAGAATGTGAAAGCTGTCTTTGA
TGCGGCCATCAAGGTGGTTCTCCAGCCGCCAAAGAACACGAAGAAAAAGA
AGAGAAGGCC
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