BQ623186

Overview
NameBQ623186
Unique NameBQ623186
TypeEST
OrganismCitrus sinensis (Sweet orange)
Sequence length610
Libraries
Library NameType
Ridge pineapple sweet orange entire seedlingcdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Alignments
Feature NameTypeLocationAnalysis
Csv1_Contig12 contig Csv1_Contig12:1..610. BLAST: Citrus Unigene V1 Contigs to Prunus persica proteins V1
Homology
BLAST of BQ623186 vs. ExPASy Swiss-Prot
Match: RHOH_BOVIN (Rho-related GTP-binding protein RhoH OS=Bos taurus GN=RHOH PE=2 SV=1)

HSP 1 Score: 121.324 bits (303), Expect = 3.769e-27
Identity = 56/170 (32.94%), Postives = 104/170 (61.18%), Query Frame = 3
Query:   93 RLACVISYTSNTFPTDYVPTVFDNFSANVVVDGSTVNLGLWDTAGQEDYNRLRPLSYRGADVFLLAFSLISKASYENVAKKWIPELRHYAPGVPIILVGTKLDLRDDKQFLADHPGAVPITTAQGEELRKLIGAPVYIECSSKTQQNVKAVFDAAIKVVLQPPKNTKKKK 602
            + + ++ +TS TFP  Y PTV++N   +V++DG  ++LGLWDTAG + +  +RPLSY+ ADV L+ +S+ +  S+ N+  KWI E+R   P  P+++V T+ D R+    +  H  +  +   +G+ L + + A  Y+ECS+ + + V+ VF+ A++  +   +   +++
Sbjct:   17 KTSLLVRFTSETFPEAYKPTVYENTGVDVLMDGIQISLGLWDTAGNDAFRSIRPLSYQQADVVLMCYSVANHNSFLNLKNKWIGEVRSNLPCTPVLVVATQTDQRE----VGPHRASC-VNAIEGKRLAQDVRAKGYLECSALSNRGVQQVFECAVRTAVNQARRRNRRR 181          
BLAST of BQ623186 vs. ExPASy Swiss-Prot
Match: RND3_PIG (Rho-related GTP-binding protein RhoE OS=Sus scrofa GN=RND3 PE=2 SV=1)

HSP 1 Score: 120.939 bits (302), Expect = 4.922e-27
Identity = 63/174 (36.21%), Postives = 102/174 (58.62%), Query Frame = 3
Query:   93 RLACVISYTSNTFPTDYVPTVFDNFSANVVVDGSTVNLGLWDTAGQEDYNRLRPLSYRGADVFLLAFSLISKASYENVAKKWIPELRHYAPGVPIILVGTKLDLRDDKQFLAD--HPGAVPITTAQGEELRKLIGAPVYIECSS-KTQQNVKAVFD-AAIKVVLQPPKNTKKKK 602
            R A +  +  + FP +YVPTVF+N++A+  +D   + L LWDT+G   Y+ +RPLSY  +D  L+ F +    + ++V KKW  E++ + P   ++LVG K DLR D   L +  +    P++  QG  + K IGA  YIECS+ +++ +V+ +F  A +  V +  KN K+ K
Sbjct:   36 RTALLHVFAKDCFPENYVPTVFENYTASFEIDTQRIELSLWDTSGSPYYDNVRPLSYPDSDAVLICFDISRPETLDSVLKKWKGEIQEFCPNTKMLLVGCKSDLRTDVSTLVELSNHRQTPVSYDQGANMAKQIGAATYIECSALQSENSVRDIFHVATLACVNKTNKNVKRNK 209          
BLAST of BQ623186 vs. ExPASy Swiss-Prot
Match: RHO3_ASHGO (GTP-binding protein RHO3 OS=Ashbya gossypii GN=RHO3 PE=3 SV=1)

HSP 1 Score: 114.39 bits (285), Expect = 4.930e-27
Identity = 63/168 (37.50%), Postives = 90/168 (53.57%), Query Frame = 3
Query:  114 YTSNTFPTDYVPTVFDNFSANVVVDGSTVNLGLWDTAGQEDYNRLRPLSYRGADVFLLAFSLISKASYENVAKKWIPELRHYAPGVPIILVGTKLDLRDDKQF---LADHPGAVP------------ITTAQGEELRKLIGAPVYIECSSKTQQNVKAVFDAAIKVVL 572
            +T   FP  Y PTVF+N+  ++ VD   + L LWDTAGQE+++RLR LSY      +L FS+ S+ S ENV  KW+ E+  +  GV ++LV  K DLR   ++    A  PG++             I   +G  + K IGA  Y+ECS+K  + V   F  A +  L
Sbjct:   35 FTRGYFPKVYEPTVFENYIHDIFVDNQHITLSLWDTAGQEEFDRLRSLSYSDTHTIMLCFSVDSRDSLENVKNKWVSEIADHCEGVKLVLVALKCDLRSSDEYGNESAITPGSIQNQKYNGGGGNGLIPYDEGLAMAKQIGALRYLECSAKMNRGVNEAFTEAARCAL 202          

HSP 2 Score: 26.1794 bits (56), Expect = 4.930e-27
Identity = 11/25 (44.00%), Postives = 16/25 (64.00%), Query Frame = 2
Query:   59 KCVTVGDGAVGKTCMRHFLHQQHFP 133
            K V +GDGA GKT + +   + +FP
Sbjct:   17 KIVILGDGACGKTSLLNVFTRGYFP 41          
BLAST of BQ623186 vs. ExPASy Swiss-Prot
Match: RHO3_YEAST (GTP-binding protein RHO3 OS=Saccharomyces cerevisiae GN=RHO3 PE=1 SV=2)

HSP 1 Score: 110.538 bits (275), Expect = 4.062e-26
Identity = 62/176 (35.23%), Postives = 90/176 (51.14%), Query Frame = 3
Query:  114 YTSNTFPTDYVPTVFDNFSANVVVDGSTVNLGLWDTAGQEDYNRLRPLSYRGADVFLLAFSLISKASYENVAKKWIPELRHYAPGVPIILVGTKLDLRDDK-----------------------QFLADHPGAVPITTAQGEELRKLIGAPVYIECSSKTQQNVKAVFDAAIKVVL 572
            +T   FP  Y PTVF+N+  ++ VD   + L LWDTAGQE+++RLR LSY      +L FS+ S+ S ENV  KW+ E+  +  GV ++LV  K DLR+++                          +   G   I+  +G  + K IGA  Y+ECS+K  + V   F  A +V L
Sbjct:   36 FTRGYFPEVYEPTVFENYIHDIFVDSKHITLSLWDTAGQEEFDRLRSLSYSDTQCIMLCFSIDSRDSLENVQNKWVGEITDHCEGVKLVLVALKCDLRNNENESNAITPNNIQQDNSVSNDNGNNINSTSNGKNLISYEEGLAMAKKIGALRYLECSAKLNKGVNEAFTEAARVAL 211          

HSP 2 Score: 26.9498 bits (58), Expect = 4.062e-26
Identity = 11/26 (42.31%), Postives = 17/26 (65.38%), Query Frame = 2
Query:   59 KCVTVGDGAVGKTCMRHFLHQQHFPD 136
            K V +GDGA GKT + +   + +FP+
Sbjct:   18 KIVILGDGACGKTSLLNVFTRGYFPE 43          
BLAST of BQ623186 vs. ExPASy Swiss-Prot
Match: RHO3_SCHCO (GTP-binding protein Rho3 OS=Schizophyllum commune GN=RHO3 PE=2 SV=1)

HSP 1 Score: 115.546 bits (288), Expect = 4.072e-26
Identity = 64/148 (43.24%), Postives = 86/148 (58.11%), Query Frame = 3
Query:  114 YTSNTFPTDYVPTVFDNFSANVVVDGSTVNLGLWDTAGQEDYNRLRPLSYRGADVFLLAFSLISKASYENVAKKWIPELRHYAPGVPIILVGTKLDLRDDKQFLADHPGAVPITTAQGEE---LRKLIGAPVYIECSSKTQQNVKAVF 548
            +T   F   Y PTVF+N+  ++ +D   V L LWDTAGQE+++RLR LSY    V ++ FS+ +  S ENV  KW+ E+  Y PGV ++LV +K DLRDD   L D        T Q EE   + + I A  Y+ECSSK  + V  VF
Sbjct:   37 FTRGFFTQVYEPTVFENYVHDLYIDDQLVELSLWDTAGQEEFDRLRSLSYAETHVIMICFSVDNPTSLENVESKWLDEILEYCPGVKLVLVDSKCDLRDDPAVL-DRLQRYGTHTDQYEEGLGVARRIRASRYLECSSKHNRGVNEVF 183          

HSP 2 Score: 21.9422 bits (45), Expect = 4.072e-26
Identity = 9/15 (60.00%), Postives = 10/15 (66.67%), Query Frame = 2
Query:   59 KCVTVGDGAVGKTCM 103
            K V  GDGA GKT +
Sbjct:   19 KVVVCGDGACGKTSL 33          
BLAST of BQ623186 vs. ExPASy Swiss-Prot
Match: RND2_MOUSE (Rho-related GTP-binding protein RhoN OS=Mus musculus GN=Rnd2 PE=2 SV=1)

HSP 1 Score: 117.087 bits (292), Expect = 7.108e-26
Identity = 57/162 (35.19%), Postives = 95/162 (58.64%), Query Frame = 3
Query:   81 APSARLACVISYTSNTFPTDYVPTVFDNFSANVVVDGSTVNLGLWDTAGQEDYNRLRPLSYRGADVFLLAFSLISKASYENVAKKWIPELRHYAPGVPIILVGTKLDLRDDKQFLAD--HPGAVPITTAQGEELRKLIGAPVYIECSSK-TQQNVKAVFDAA 557
            A   + A +  +  + +P  YVPTVF+N++A+  +D   + L +WDT+G   Y+ +RPL+Y  +D  L+ F +    + ++V KKW  E + + P   ++LVG KLD+R D   L +      +P+T  QG  L K +GA  Y+ECSS+ ++++V+ VF  A
Sbjct:   16 AECGKTALLQVFAKDAYPGSYVPTVFENYTASFEIDKRRIELNMWDTSGSSYYDNVRPLAYPDSDAVLICFDISRPETLDSVLKKWQGETQEFCPNAKVVLVGCKLDMRTDLATLRELSKQRLIPVTHEQGTVLAKQVGAVSYVECSSRSSERSVRDVFHVA 177          
BLAST of BQ623186 vs. ExPASy Swiss-Prot
Match: RND2_HUMAN (Rho-related GTP-binding protein RhoN OS=Homo sapiens GN=RND2 PE=1 SV=2)

HSP 1 Score: 117.087 bits (292), Expect = 7.108e-26
Identity = 57/162 (35.19%), Postives = 95/162 (58.64%), Query Frame = 3
Query:   81 APSARLACVISYTSNTFPTDYVPTVFDNFSANVVVDGSTVNLGLWDTAGQEDYNRLRPLSYRGADVFLLAFSLISKASYENVAKKWIPELRHYAPGVPIILVGTKLDLRDDKQFLAD--HPGAVPITTAQGEELRKLIGAPVYIECSSK-TQQNVKAVFDAA 557
            A   + A +  +  + +P  YVPTVF+N++A+  +D   + L +WDT+G   Y+ +RPL+Y  +D  L+ F +    + ++V KKW  E + + P   ++LVG KLD+R D   L +      +P+T  QG  L K +GA  Y+ECSS+ ++++V+ VF  A
Sbjct:   16 AECGKTALLQVFAKDAYPGSYVPTVFENYTASFEIDKRRIELNMWDTSGSSYYDNVRPLAYPDSDAVLICFDISRPETLDSVLKKWQGETQEFCPNAKVVLVGCKLDMRTDLATLRELSKQRLIPVTHEQGTVLAKQVGAVSYVECSSRSSERSVRDVFHVA 177          
BLAST of BQ623186 vs. ExPASy Swiss-Prot
Match: RACN_DICDI (Rho-related protein racN OS=Dictyostelium discoideum GN=racN PE=3 SV=1)

HSP 1 Score: 112.849 bits (281), Expect = 2.574e-25
Identity = 56/141 (39.72%), Postives = 84/141 (59.57%), Query Frame = 3
Query:  129 FPTDYVPTVFDNFSANVVVDGSTVNLGLWDTAGQEDYNRLRPLSYRGADVFLLAFSLISKASYENVAKKWIPELRHYAPGVPIILVGTKLDLRDDKQFLADHPGAVPITTAQGEELRKLIGAPVYIECSSKTQQNVKAVFD 551
            FP +Y+PT+FDN    + ++   + +G WDT G E+Y R  PLSY   ++FL+ FS+ S+ S+ N    W+PE+  + P VPIILVGTK DLR+   +      +  +T  +G E++  I A  Y+ECSS   + V  +FD
Sbjct:   29 FPLEYIPTIFDNHYFEIKINDQIMRIGCWDTGGGEEYPR--PLSYPQTNLFLILFSISSRNSFNNCETYWLPEVTKFLPSVPIILVGTKTDLRNCDDY---KDKSTFVTYEEGLEMKDKINASAYLECSSLLNKGVDDLFD 164          

HSP 2 Score: 21.9422 bits (45), Expect = 2.574e-25
Identity = 8/18 (44.44%), Postives = 12/18 (66.67%), Query Frame = 2
Query:   50 RFIKCVTVGDGAVGKTCM 103
            + IK V +GD  +GKT +
Sbjct:    4 KIIKAVVLGDVTIGKTSL 21          
BLAST of BQ623186 vs. ExPASy Swiss-Prot
Match: RND1_BOVIN (Rho-related GTP-binding protein Rho6 OS=Bos taurus GN=RND1 PE=2 SV=1)

HSP 1 Score: 108.612 bits (270), Expect = 2.116e-24
Identity = 56/154 (36.36%), Postives = 87/154 (56.49%), Query Frame = 3
Query:  129 FPTDYVPTVFDNFSANVVVDGSTVNLGLWDTAGQEDYNRLRPLSYRGADVFLLAFSLISKASYENVAKKWIPELRHYAPGVPIILVGTKLDLRDDKQFLAD--HPGAVPITTAQGEELRKLIGAPVYIECSSKT-QQNVKAVFDAAIKVVLQPP 581
            +P  YVPTVF+N++A +  +   V L LWDT+G   Y+ +RPL Y  +D  LL F +    + ++  KKW  E+  Y P   ++L+G K DLR D   L +  H    PI+  QG  + K +GA +Y+E S+ T ++++ ++F  A  V L  P
Sbjct:   38 YPETYVPTVFENYTACLETEEQRVELSLWDTSGSPYYDNVRPLCYSDSDAVLLCFDISRPETVDSALKKWRTEILDYCPSTRVLLIGCKTDLRTDLSTLMELSHQKQAPISYEQGCAIAKQLGAEIYLEGSAFTSEKSIHSIFRTASMVCLNKP 191          

HSP 2 Score: 23.0978 bits (48), Expect = 2.116e-24
Identity = 11/26 (42.31%), Postives = 14/26 (53.85%), Query Frame = 2
Query:   59 KCVTVGDGAVGKTCMRHFLHQQHFPD 136
            K V VGD   GKT M   L +  +P+
Sbjct:   15 KLVLVGDVQCGKTAMLQVLAKDCYPE 40          
BLAST of BQ623186 vs. ExPASy Swiss-Prot
Match: RND1_HUMAN (Rho-related GTP-binding protein Rho6 OS=Homo sapiens GN=RND1 PE=1 SV=1)

HSP 1 Score: 108.227 bits (269), Expect = 2.754e-24
Identity = 56/160 (35.00%), Postives = 89/160 (55.62%), Query Frame = 3
Query:  129 FPTDYVPTVFDNFSANVVVDGSTVNLGLWDTAGQEDYNRLRPLSYRGADVFLLAFSLISKASYENVAKKWIPELRHYAPGVPIILVGTKLDLRDDKQFLAD--HPGAVPITTAQGEELRKLIGAPVYIECSSKT-QQNVKAVFDAAIKVVLQPPKNTKKK 599
            +P  YVPTVF+N++A +  +   V L LWDT+G   Y+ +RPL Y  +D  LL F +    + ++  KKW  E+  Y P   ++L+G K DLR D   L +  H    PI+  QG  + K +GA +Y+E S+ T ++++ ++F  A  + L  P    +K
Sbjct:   38 YPETYVPTVFENYTACLETEEQRVELSLWDTSGSPYYDNVRPLCYSDSDAVLLCFDISRPETVDSALKKWRTEILDYCPSTRVLLIGCKTDLRTDLSTLMELSHQKQAPISYEQGCAIAKQLGAEIYLEGSAFTSEKSIHSIFRTASMLCLNKPSPLPQK 197          

HSP 2 Score: 23.0978 bits (48), Expect = 2.754e-24
Identity = 11/26 (42.31%), Postives = 14/26 (53.85%), Query Frame = 2
Query:   59 KCVTVGDGAVGKTCMRHFLHQQHFPD 136
            K V VGD   GKT M   L +  +P+
Sbjct:   15 KLVLVGDVQCGKTAMLQVLAKDCYPE 40          
The following BLAST results are available for this feature:
BLAST of BQ623186 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 500
Match NameE-valueIdentityDescription
RHOH_BOVIN3.769e-2732.94Rho-related GTP-binding protein RhoH OS=Bos taurus... [more]
RND3_PIG4.922e-2736.21Rho-related GTP-binding protein RhoE OS=Sus scrofa... [more]
RHO3_ASHGO4.930e-2737.50GTP-binding protein RHO3 OS=Ashbya gossypii GN=RHO... [more]
RHO3_YEAST4.062e-2635.23GTP-binding protein RHO3 OS=Saccharomyces cerevisi... [more]
RHO3_SCHCO4.072e-2643.24GTP-binding protein Rho3 OS=Schizophyllum commune ... [more]
RND2_MOUSE7.108e-2635.19Rho-related GTP-binding protein RhoN OS=Mus muscul... [more]
RND2_HUMAN7.108e-2635.19Rho-related GTP-binding protein RhoN OS=Homo sapie... [more]
RACN_DICDI2.574e-2539.72Rho-related protein racN OS=Dictyostelium discoide... [more]
RND1_BOVIN2.116e-2436.36Rho-related GTP-binding protein Rho6 OS=Bos taurus... [more]
RND1_HUMAN2.754e-2435.00Rho-related GTP-binding protein Rho6 OS=Homo sapie... [more]

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Properties
Property NameValue
Genbank descriptionUSDA-FP_00277 Ridge pineapple sweet orange entire seedling Citrus sinensis cDNA clone USDA-FP_00277 5, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>BQ623186 ID=BQ623186; Name=BQ623186; organism=Citrus sinensis; type=EST; length=610bp
GTAATAAAGATACTGTCTTAAGTGCACGTGGCGCGAGATGAGTGCATCGA
GGTTCATAAAGTGCGTGACGGTCGGTGACGGCGCCGTCGGCAAGACTTGC
ATGCGTCATTTCTTACACCAGCAACACTTTCCCGACGGATTATGTGCCAA
CAGTATTTGACAATTTCAGTGCAAATGTGGTAGTGGATGGAAGCACTGTT
AATCTTGGGTTGTGGGACACTGCAGGCCAGGAAGATTACAATAGACTAAG
ACCATTGAGCTACCGCGGGGCAGATGTCTTCTTACTCGCATTCTCTCTCA
TTAGCAAGGCCAGCTATGAAAATGTTGCTAAGAAATGGATTCCTGAGTTG
AGGCATTATGCACCTGGTGTTCCAATAATTCTTGTCGGGACGAAGCTCGA
TCTTCGGGATGATAAGCAGTTCCTTGCAGATCACCCTGGTGCAGTGCCAA
TTACCACGGCCCAAGGGGAGGAATTGAGAAAGTTGATAGGTGCTCCTGTT
TACATTGAGTGTAGTTCCAAAACACAACAGAATGTGAAAGCTGTCTTTGA
TGCGGCCATCAAGGTGGTTCTCCAGCCGCCAAAGAACACGAAGAAAAAGA
AGAGAAGGCC
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