BQ623186

Overview
NameBQ623186
Unique NameBQ623186
TypeEST
OrganismCitrus sinensis (Sweet orange)
Sequence length610
Libraries
Library NameType
Ridge pineapple sweet orange entire seedlingcdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Alignments
Feature NameTypeLocationAnalysis
Csv1_Contig12 contig Csv1_Contig12:1..610. BLAST: Citrus Unigene V1 Contigs to Prunus persica proteins V1
Homology
BLAST of BQ623186 vs. ExPASy Swiss-Prot
Match: RAB3A_MOUSE (Ras-related protein Rab-3A OS=Mus musculus GN=Rab3a PE=1 SV=1)

HSP 1 Score: 70.8626 bits (172), Expect = 5.842e-12
Identity = 42/156 (26.92%), Postives = 79/156 (50.64%), Query Frame = 3
Query:  114 YTSNTFPTDYVPTVFDNFSANVVV-DGSTVNLGLWDTAGQEDYNRLRPLSYRGADVFLLAFSLISKASYENVAKKWIPELRHYA-PGVPIILVGTKLDLRDDKQFLADHPGAVPITTAQGEELRKLIGAPVYIECSSKTQQNVKAVFDAAIKVVLQ 575
            Y  ++F   +V TV  +F    +  +   + L +WDTAGQE Y  +    YRGA  F+L + + ++ S+ N  + W  +++ Y+     ++LVG K D+ D++           +++ +G +L   +G   + E S+K   NVK  F+  + V+ +
Sbjct:   42 YADDSFTPAFVSTVGIDFKVKTIYRNDKRIKLQIWDTAGQERYRTITTAYYRGAMGFILMYDITNEESF-NAVQDWSTQIKTYSWDNAQVLLVGNKCDMEDER----------VVSSERGRQLADHLGFE-FFEASAKDNINVKQTFERLVDVICE 185          
BLAST of BQ623186 vs. ExPASy Swiss-Prot
Match: RAB3A_MACFA (Ras-related protein Rab-3A OS=Macaca fascicularis GN=RAB3A PE=2 SV=1)

HSP 1 Score: 70.8626 bits (172), Expect = 5.842e-12
Identity = 42/156 (26.92%), Postives = 79/156 (50.64%), Query Frame = 3
Query:  114 YTSNTFPTDYVPTVFDNFSANVVV-DGSTVNLGLWDTAGQEDYNRLRPLSYRGADVFLLAFSLISKASYENVAKKWIPELRHYA-PGVPIILVGTKLDLRDDKQFLADHPGAVPITTAQGEELRKLIGAPVYIECSSKTQQNVKAVFDAAIKVVLQ 575
            Y  ++F   +V TV  +F    +  +   + L +WDTAGQE Y  +    YRGA  F+L + + ++ S+ N  + W  +++ Y+     ++LVG K D+ D++           +++ +G +L   +G   + E S+K   NVK  F+  + V+ +
Sbjct:   42 YADDSFTPAFVSTVGIDFKVKTIYRNDKRIKLQIWDTAGQERYRTITTAYYRGAMGFILMYDITNEESF-NAVQDWSTQIKTYSWDNAQVLLVGNKCDMEDER----------VVSSERGRQLADHLGFE-FFEASAKDNINVKQTFERLVDVICE 185          
BLAST of BQ623186 vs. ExPASy Swiss-Prot
Match: RAB3A_HUMAN (Ras-related protein Rab-3A OS=Homo sapiens GN=RAB3A PE=1 SV=1)

HSP 1 Score: 70.8626 bits (172), Expect = 5.842e-12
Identity = 42/156 (26.92%), Postives = 79/156 (50.64%), Query Frame = 3
Query:  114 YTSNTFPTDYVPTVFDNFSANVVV-DGSTVNLGLWDTAGQEDYNRLRPLSYRGADVFLLAFSLISKASYENVAKKWIPELRHYA-PGVPIILVGTKLDLRDDKQFLADHPGAVPITTAQGEELRKLIGAPVYIECSSKTQQNVKAVFDAAIKVVLQ 575
            Y  ++F   +V TV  +F    +  +   + L +WDTAGQE Y  +    YRGA  F+L + + ++ S+ N  + W  +++ Y+     ++LVG K D+ D++           +++ +G +L   +G   + E S+K   NVK  F+  + V+ +
Sbjct:   42 YADDSFTPAFVSTVGIDFKVKTIYRNDKRIKLQIWDTAGQERYRTITTAYYRGAMGFILMYDITNEESF-NAVQDWSTQIKTYSWDNAQVLLVGNKCDMEDER----------VVSSERGRQLADHLGFE-FFEASAKDNINVKQTFERLVDVICE 185          
BLAST of BQ623186 vs. ExPASy Swiss-Prot
Match: RAB3A_BOVIN (Ras-related protein Rab-3A OS=Bos taurus GN=RAB3A PE=1 SV=3)

HSP 1 Score: 70.8626 bits (172), Expect = 5.842e-12
Identity = 42/156 (26.92%), Postives = 79/156 (50.64%), Query Frame = 3
Query:  114 YTSNTFPTDYVPTVFDNFSANVVV-DGSTVNLGLWDTAGQEDYNRLRPLSYRGADVFLLAFSLISKASYENVAKKWIPELRHYA-PGVPIILVGTKLDLRDDKQFLADHPGAVPITTAQGEELRKLIGAPVYIECSSKTQQNVKAVFDAAIKVVLQ 575
            Y  ++F   +V TV  +F    +  +   + L +WDTAGQE Y  +    YRGA  F+L + + ++ S+ N  + W  +++ Y+     ++LVG K D+ D++           +++ +G +L   +G   + E S+K   NVK  F+  + V+ +
Sbjct:   42 YADDSFTPAFVSTVGIDFKVKTIYRNDKRIKLQIWDTAGQERYRTITTAYYRGAMGFILMYDITNEESF-NAVQDWSTQIKTYSWDNAQVLLVGNKCDMEDER----------VVSSERGRQLADHLGFE-FFEASAKDNINVKQTFERLVDVICE 185          
BLAST of BQ623186 vs. ExPASy Swiss-Prot
Match: RAB24_DICDI (Ras-related protein Rab-24 OS=Dictyostelium discoideum GN=rab24 PE=3 SV=1)

HSP 1 Score: 67.781 bits (164), Expect = 7.396e-12
Identity = 50/151 (33.11%), Postives = 77/151 (50.99%), Query Frame = 3
Query:  102 CVIS-YTSNTFPTDYVPTVFDNFSANVVVDGST-VNLGLWDTAGQEDYNRLRPLSYRGADVFLLAFSLISKASYENVAKKWIPELRHYAPGVPIILVGTKLDLRDDKQFLADHPGAVPITTAQGEELRKLIGAPVYIECSSKTQQNVKAVF 548
            C+++ YTS  F   +  T+   FS+  VV G T V LG+WDTAG E Y  +    YR A+  ++ + L ++ S+E V   W  EL    P + I +VGTKLDL       A       +   + ++  +   A ++ E SS+T +NV  +F
Sbjct:   22 CIVTRYTSGQFGDTHT-TIGGAFSSKRVVVGETEVLLGIWDTAGTERYQAVNVSYYRRANAAIVCYDLTNRESWEKVT-FWAEELTQNEPEIEIYIVGTKLDLIQQGDIKA-------VPEEEVKQTARRYKAHIF-ETSSRTGENVSLLF 162          

HSP 2 Score: 21.557 bits (44), Expect = 7.396e-12
Identity = 8/16 (50.00%), Postives = 12/16 (75.00%), Query Frame = 2
Query:   56 IKCVTVGDGAVGKTCM 103
            +K V +G  +VGKTC+
Sbjct:    8 LKVVLLGYASVGKTCI 23          
BLAST of BQ623186 vs. ExPASy Swiss-Prot
Match: RAB31_RAT (Ras-related protein Rab-31 OS=Rattus norvegicus GN=Rab31 PE=2 SV=2)

HSP 1 Score: 68.5514 bits (166), Expect = 7.406e-12
Identity = 48/165 (29.09%), Postives = 86/165 (52.12%), Query Frame = 3
Query:  105 VISYTSNTFPTDYVPTVFDNFSANVVVDGSTVNLGL-WDTAGQEDYNRLRPLSYRGADVFLLAFSLISKASYENVAKKWIPELRHYAP-GVPIILVGTKLDLRDDKQFLADHPGAVPITTAQGEELRKLIGAPVYIECSSKTQQNVKAVFDAAIKVV--LQPPKN 587
            V  +  + F  +  PT+  +F    V  G+ ++  L WDTAGQE ++ L P+ YRG+   ++ + +  + S+  + KKW+ EL+ + P  + + + G K DL D ++        VP+  A  +E  + IGA V +E S+K   N++ +F    + +  L P +N
Sbjct:   22 VCRFVQDHFDHNISPTIGASFMTKTVPCGNELHKFLIWDTAGQERFHSLAPMYYRGSAAAVIVYDITKQDSFHTL-KKWVKELKEHGPENIVMAIAGNKCDLSDIRE--------VPLKDA--KEYAESIGALV-VETSAKNAINIEELFQGISRQIPPLDPHEN 174          

HSP 2 Score: 20.7866 bits (42), Expect = 7.406e-12
Identity = 11/29 (37.93%), Postives = 15/29 (51.72%), Query Frame = 2
Query:   44 ASRFIKCVTVGDGAVGKTCMRHFLHQQHF 130
            A R +K   +GD  VGK+ +     Q HF
Sbjct:    2 AIRELKVCLLGDTGVGKSSIVCRFVQDHF 30          
BLAST of BQ623186 vs. ExPASy Swiss-Prot
Match: RAB31_MOUSE (Ras-related protein Rab-31 OS=Mus musculus GN=Rab31 PE=1 SV=1)

HSP 1 Score: 68.5514 bits (166), Expect = 7.406e-12
Identity = 47/165 (28.48%), Postives = 86/165 (52.12%), Query Frame = 3
Query:  105 VISYTSNTFPTDYVPTVFDNFSANVVVDGSTVNLGL-WDTAGQEDYNRLRPLSYRGADVFLLAFSLISKASYENVAKKWIPELRHYAP-GVPIILVGTKLDLRDDKQFLADHPGAVPITTAQGEELRKLIGAPVYIECSSKTQQNVKAVFDAAIKVV--LQPPKN 587
            V  +  + F  +  PT+  +F    V  G+ ++  L WDTAGQE ++ L P+ YRG+   ++ + +  + S+  + KKW+ EL+ + P  + + + G K DL D ++        VP+  A  +E  + IGA + +E S+K   N++ +F    + +  L P +N
Sbjct:   22 VCRFVQDHFDHNISPTIGASFMTKTVPCGNELHKFLIWDTAGQERFHSLAPMYYRGSAAAVIVYDITKQDSFHTL-KKWVKELKEHGPENIVMAIAGNKCDLSDIRE--------VPLKDA--KEYAESIGA-IVVETSAKNAINIEELFQGISRQIPPLGPQEN 174          

HSP 2 Score: 20.7866 bits (42), Expect = 7.406e-12
Identity = 11/29 (37.93%), Postives = 15/29 (51.72%), Query Frame = 2
Query:   44 ASRFIKCVTVGDGAVGKTCMRHFLHQQHF 130
            A R +K   +GD  VGK+ +     Q HF
Sbjct:    2 AIRELKVCLLGDTGVGKSSIVCRFVQDHF 30          
BLAST of BQ623186 vs. ExPASy Swiss-Prot
Match: RAB5C_BOVIN (Ras-related protein Rab-5C OS=Bos taurus GN=RAB5C PE=2 SV=1)

HSP 1 Score: 70.4774 bits (171), Expect = 7.630e-12
Identity = 47/138 (34.06%), Postives = 70/138 (50.72%), Query Frame = 3
Query:  177 VVVDGSTVNLGLWDTAGQEDYNRLRPLSYRGADVFLLAFSLISKASYENVAKKWIPEL-RHYAPGVPIILVGTKLDLRDDKQFLADHPGAVPITTAQGEELRKLIGAPVYIECSSKTQQNVKAVFDAAIKVVLQPPKN 587
            V +D +TV   +WDTAGQE Y+ L P+ YRGA   ++ + + +  ++   AK W+ EL R  +P + I L G K DL   +        AV    AQ       +   +++E S+KT  NV  +F A  K +   PKN
Sbjct:   63 VCLDDTTVKFEIWDTAGQERYHSLAPMYYRGAQAAIVVYDITNTDTFAR-AKNWVKELQRQASPNIVIALAGNKADLASKR--------AVEFQEAQAYAEDNSL---LFMETSAKTAMNVNEIFMAIAKKL---PKN 185          
BLAST of BQ623186 vs. ExPASy Swiss-Prot
Match: RAB3D_RAT (GTP-binding protein Rab-3D OS=Rattus norvegicus GN=Rab3d PE=1 SV=2)

HSP 1 Score: 70.4774 bits (171), Expect = 7.630e-12
Identity = 46/154 (29.87%), Postives = 76/154 (49.35%), Query Frame = 3
Query:  114 YTSNTFPTDYVPTVFDNFSANVVV-DGSTVNLGLWDTAGQEDYNRLRPLSYRGADVFLLAFSLISKASYENVAKKWIPELRHYA-PGVPIILVGTKLDLRDDKQFLADHPGAVPITTAQGEELRKLIGAPVYIECSSKTQQNVKAVFDAAIKVV 569
            Y  ++F   +V TV  +F    V      + L +WDTAGQE Y  +    YRGA  FLL + + ++ S+  V + W  +++ Y+     +ILVG K DL D++           ++   G+ L   +G   + E S+K   NVK VF+  + ++
Sbjct:   42 YADDSFTPAFVSTVGIDFKVKTVYRHDKRIKLQIWDTAGQERYRTITTAYYRGAMGFLLMYDIANQESFTAV-QDWATQIKTYSWDNAQVILVGNKCDLEDER----------VVSAEDGQRLAGDLGFE-FFEASAKENINVKQVFERLVDII 183          
BLAST of BQ623186 vs. ExPASy Swiss-Prot
Match: RAB3D_HUMAN (Ras-related protein Rab-3D OS=Homo sapiens GN=RAB3D PE=1 SV=1)

HSP 1 Score: 70.4774 bits (171), Expect = 7.630e-12
Identity = 48/156 (30.77%), Postives = 76/156 (48.72%), Query Frame = 3
Query:  114 YTSNTFPTDYVPTVFDNFSANVVV-DGSTVNLGLWDTAGQEDYNRLRPLSYRGADVFLLAFSLISKASYENVAKKWIPELRHYA-PGVPIILVGTKLDLRDDKQFLADHPGAVPITTAQGEELRKLIGAPVYIECSSKTQQNVKAVFDAAIKVVLQ 575
            Y  ++F   +V TV  +F    V      + L +WDTAGQE Y  +    YRGA  FLL + + ++ S+  V + W  +++ Y+     +ILVG K DL D++   A+           G  L   +G   + E S+K   NVK VF+  + V+ +
Sbjct:   42 YADDSFTPAFVSTVGIDFKVKTVYRHDKRIKLQIWDTAGQERYRTITTAYYRGAMGFLLMYDIANQESFAAV-QDWATQIKTYSWDNAQVILVGNKCDLEDERVVPAE----------DGRRLADDLGFE-FFEASAKENINVKQVFERLVDVICE 185          
The following BLAST results are available for this feature:
BLAST of BQ623186 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 500
Match NameE-valueIdentityDescription
RAB3A_MOUSE5.842e-1226.92Ras-related protein Rab-3A OS=Mus musculus GN=Rab3... [more]
RAB3A_MACFA5.842e-1226.92Ras-related protein Rab-3A OS=Macaca fascicularis ... [more]
RAB3A_HUMAN5.842e-1226.92Ras-related protein Rab-3A OS=Homo sapiens GN=RAB3... [more]
RAB3A_BOVIN5.842e-1226.92Ras-related protein Rab-3A OS=Bos taurus GN=RAB3A ... [more]
RAB24_DICDI7.396e-1233.11Ras-related protein Rab-24 OS=Dictyostelium discoi... [more]
RAB31_RAT7.406e-1229.09Ras-related protein Rab-31 OS=Rattus norvegicus GN... [more]
RAB31_MOUSE7.406e-1228.48Ras-related protein Rab-31 OS=Mus musculus GN=Rab3... [more]
RAB5C_BOVIN7.630e-1234.06Ras-related protein Rab-5C OS=Bos taurus GN=RAB5C ... [more]
RAB3D_RAT7.630e-1229.87GTP-binding protein Rab-3D OS=Rattus norvegicus GN... [more]
RAB3D_HUMAN7.630e-1230.77Ras-related protein Rab-3D OS=Homo sapiens GN=RAB3... [more]

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Properties
Property NameValue
Genbank descriptionUSDA-FP_00277 Ridge pineapple sweet orange entire seedling Citrus sinensis cDNA clone USDA-FP_00277 5, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>BQ623186 ID=BQ623186; Name=BQ623186; organism=Citrus sinensis; type=EST; length=610bp
GTAATAAAGATACTGTCTTAAGTGCACGTGGCGCGAGATGAGTGCATCGA
GGTTCATAAAGTGCGTGACGGTCGGTGACGGCGCCGTCGGCAAGACTTGC
ATGCGTCATTTCTTACACCAGCAACACTTTCCCGACGGATTATGTGCCAA
CAGTATTTGACAATTTCAGTGCAAATGTGGTAGTGGATGGAAGCACTGTT
AATCTTGGGTTGTGGGACACTGCAGGCCAGGAAGATTACAATAGACTAAG
ACCATTGAGCTACCGCGGGGCAGATGTCTTCTTACTCGCATTCTCTCTCA
TTAGCAAGGCCAGCTATGAAAATGTTGCTAAGAAATGGATTCCTGAGTTG
AGGCATTATGCACCTGGTGTTCCAATAATTCTTGTCGGGACGAAGCTCGA
TCTTCGGGATGATAAGCAGTTCCTTGCAGATCACCCTGGTGCAGTGCCAA
TTACCACGGCCCAAGGGGAGGAATTGAGAAAGTTGATAGGTGCTCCTGTT
TACATTGAGTGTAGTTCCAAAACACAACAGAATGTGAAAGCTGTCTTTGA
TGCGGCCATCAAGGTGGTTCTCCAGCCGCCAAAGAACACGAAGAAAAAGA
AGAGAAGGCC
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