BQ623186

Overview
NameBQ623186
Unique NameBQ623186
TypeEST
OrganismCitrus sinensis (Sweet orange)
Sequence length610
Libraries
Library NameType
Ridge pineapple sweet orange entire seedlingcdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Alignments
Feature NameTypeLocationAnalysis
Csv1_Contig12 contig Csv1_Contig12:1..610. BLAST: Citrus Unigene V1 Contigs to Prunus persica proteins V1
Homology
BLAST of BQ623186 vs. ExPASy Swiss-Prot
Match: RAB17_HUMAN (Ras-related protein Rab-17 OS=Homo sapiens GN=RAB17 PE=1 SV=2)

HSP 1 Score: 67.3958 bits (163), Expect = 9.582e-12
Identity = 53/162 (32.72%), Postives = 86/162 (53.09%), Query Frame = 3
Query:  108 ISYTSNTFPTDYVPTVFDNFSANVVVDGST-VNLGLWDTAGQEDYNRLRPLSYRGADVFLLAFSLISKASYENVAKKWIPEL-RHYAPG-VPIILVGTKLDLRDDKQFLADHPGAVPITTAQGEEL---RKLIGAPVYIECSSKTQQNVKAVFDAAIKVVLQ 575
            + Y  N F +  +PTV   F   VV  G+T + L +WDTAGQE Y+ +  L +RGA+  LL + +  K S+   A++W+ +L     PG V ++LVG K DL  +++          +T  +G+E    +KL+    ++E S+K    V  VF+   + +LQ
Sbjct:   37 LRYVKNDFKS-ILPTVGCAFFTKVVDVGATSLKLEIWDTAGQEKYHSVCHLYFRGANAALLVYDITRKDSFLK-AQQWLKDLEEELHPGEVLVMLVGNKTDLSQERE----------VTFQEGKEFADSQKLL----FMETSAKLNHQVSEVFNTVAQELLQ 182          

HSP 2 Score: 21.557 bits (44), Expect = 9.582e-12
Identity = 9/21 (42.86%), Postives = 13/21 (61.90%), Query Frame = 2
Query:   41 SASRFIKCVTVGDGAVGKTCM 103
            S  R  K V +G G+VGK+ +
Sbjct:   15 SQPRVFKLVLLGSGSVGKSSL 35          
BLAST of BQ623186 vs. ExPASy Swiss-Prot
Match: RAB31_HUMAN (Ras-related protein Rab-31 OS=Homo sapiens GN=RAB31 PE=1 SV=1)

HSP 1 Score: 68.1662 bits (165), Expect = 9.616e-12
Identity = 47/165 (28.48%), Postives = 86/165 (52.12%), Query Frame = 3
Query:  105 VISYTSNTFPTDYVPTVFDNFSANVVVDGSTVNLGL-WDTAGQEDYNRLRPLSYRGADVFLLAFSLISKASYENVAKKWIPELRHYAP-GVPIILVGTKLDLRDDKQFLADHPGAVPITTAQGEELRKLIGAPVYIECSSKTQQNVKAVFDAAIKVV--LQPPKN 587
            V  +  + F  +  PT+  +F    V  G+ ++  L WDTAGQE ++ L P+ YRG+   ++ + +  + S+  + KKW+ EL+ + P  + + + G K DL D ++        VP+  A  +E  + IGA + +E S+K   N++ +F    + +  L P +N
Sbjct:   22 VCRFVQDHFDHNISPTIGASFMTKTVPCGNELHKFLIWDTAGQERFHSLAPMYYRGSAAAVIVYDITKQDSFYTL-KKWVKELKEHGPENIVMAIAGNKCDLSDIRE--------VPLKDA--KEYAESIGA-IVVETSAKNAINIEELFQGISRQIPPLDPHEN 174          

HSP 2 Score: 20.7866 bits (42), Expect = 9.616e-12
Identity = 11/29 (37.93%), Postives = 15/29 (51.72%), Query Frame = 2
Query:   44 ASRFIKCVTVGDGAVGKTCMRHFLHQQHF 130
            A R +K   +GD  VGK+ +     Q HF
Sbjct:    2 AIRELKVCLLGDTGVGKSSIVCRFVQDHF 30          
BLAST of BQ623186 vs. ExPASy Swiss-Prot
Match: YPT3_SCHPO (GTP-binding protein ypt3 OS=Schizosaccharomyces pombe GN=ypt3 PE=1 SV=1)

HSP 1 Score: 70.0922 bits (170), Expect = 9.965e-12
Identity = 48/163 (29.45%), Postives = 78/163 (47.85%), Query Frame = 3
Query:  105 VISYTSNTFPTDYVPTVFDNFSA-NVVVDGSTVNLGLWDTAGQEDYNRLRPLSYRGADVFLLAFSLISKASYENVAKKWIPELRHYA-PGVPIILVGTKLDLRDDKQFLADHPGAVPITTAQGEELRKLIGAPVYIECSSKTQQNVKAVFDAAIKVVLQPPKN 587
            ++ +T N F  +   T+   F+  N+V+D   +   +WDTAGQE Y  +    YRGA   L+ + +  ++S++NV  +W+ ELR +A   + I+LVG K DL         H  AV    AQ       +    +IE S+    NV+  F   +  + +   N
Sbjct:   27 LMRFTRNEFNIESKSTIGVEFATRNIVLDNKKIKAQIWDTAGQERYRAITSAYYRGAVGALIVYDITKQSSFDNVG-RWLKELREHADSNIVIMLVGNKTDLL--------HLRAVSTEEAQAFAAENNLS---FIETSAMDASNVEEAFQTVLTEIFRIVSN 177          
BLAST of BQ623186 vs. ExPASy Swiss-Prot
Match: RB11D_LOTJA (Ras-related protein Rab11D OS=Lotus japonicus GN=RAB11D PE=2 SV=1)

HSP 1 Score: 70.0922 bits (170), Expect = 9.965e-12
Identity = 48/147 (32.65%), Postives = 73/147 (49.66%), Query Frame = 3
Query:  114 YTSNTFPTDYVPTVFDNFSANVV-VDGSTVNLGLWDTAGQEDYNRLRPLSYRGADVFLLAFSLISKASYENVAKKWIPELR-HYAPGVPIILVGTKLDLRDDKQFLADHPGAVPITTAQGEELRKLIGAPVYIECSSKTQQNVKAVF 548
            +T N F  +   T+   F+   + VD   V   +WDTAGQE Y  +    YRGA   LL + +  +A++EN A +W+ ELR H  P + ++L+G K DLR        H  AVP    +    R+ +    ++E S+    NV+  F
Sbjct:   33 FTKNEFNLESKSTIGVEFATKTLNVDAKVVKAQIWDTAGQERYRAITSAYYRGAVGALLVYDVTRRATFENAA-RWLKELRDHTDPNIVVMLIGNKSDLR--------HLVAVPTEDGKSFAERESL---YFMETSALEATNVENAF 167          
BLAST of BQ623186 vs. ExPASy Swiss-Prot
Match: RASL_COLTR (Ras-like protein OS=Colletotrichum trifolii GN=RAS PE=2 SV=1)

HSP 1 Score: 70.0922 bits (170), Expect = 9.965e-12
Identity = 48/150 (32.00%), Postives = 77/150 (51.33%), Query Frame = 3
Query:  108 ISYTSNTFPTDYVPTVFDNFSANVVVDGSTVNLGLWDTAGQEDYNRLRPLSYRGADVFLLAFSLISKASYENVAKKWIPELR-HYAPGVPIILVGTKLDLRDDKQFLADHPGAVPITTAQGEELRKLIGAPVYIECSSKTQQNV-KAVFD 551
            I    + F  +Y PT+ D++    V+D     L + DTAGQE+Y+ +R    R  + FLL +S+ S+ S+E +       LR       P+++VG K DL  +++          +T  +GE L K  G   +IE S+K++ NV KA +D
Sbjct:   26 IQLIQSHFVDEYDPTIEDSYRKQCVIDEEVALLDVLDTAGQEEYSAMREQYMRTGEGFLLVYSITSRQSFEEITTFQQQILRVKDKDYFPMVVVGNKCDLEGERE----------VTRQEGEALAKSFGCK-FIETSAKSRINVDKAFYD 164          
BLAST of BQ623186 vs. ExPASy Swiss-Prot
Match: RAP2C_MOUSE (Ras-related protein Rap-2c OS=Mus musculus GN=Rap2c PE=1 SV=1)

HSP 1 Score: 70.0922 bits (170), Expect = 9.965e-12
Identity = 43/157 (27.39%), Postives = 83/157 (52.87%), Query Frame = 3
Query:   99 ACVISYTSNTFPTDYVPTVFDNFSANVVVDGSTVNLGLWDTAGQEDYNRLRPLSYRGADVFLLAFSLISKASYENV--AKKWIPELRHYAPGVPIILVGTKLDLRDDKQFLADHPGAVPITTAQGEELRKLIGAPVYIECSSKTQQNVKAVFDAAIK 563
            A  + + + TF   Y PT+ D +   + VD S   L + DTAG E +  +R L  +    F+L +SL+++ S++++   +  I  ++ Y   VP+ILVG K+DL  +++          + +++G  L +  G P ++E S+K++  V  +F   ++
Sbjct:   18 ALTVQFVTGTFIEKYDPTIEDFYRKEIEVDSSPSVLEILDTAGTEQFASMRDLYIKNGQGFILVYSLVNQQSFQDIKPMRDQIVRVKRYEK-VPLILVGNKVDLEPERE----------VMSSEGRALAQEWGCP-FMETSAKSKSMVDELFAEIVR 162          
BLAST of BQ623186 vs. ExPASy Swiss-Prot
Match: RAP2C_HUMAN (Ras-related protein Rap-2c OS=Homo sapiens GN=RAP2C PE=1 SV=1)

HSP 1 Score: 70.0922 bits (170), Expect = 9.965e-12
Identity = 43/157 (27.39%), Postives = 83/157 (52.87%), Query Frame = 3
Query:   99 ACVISYTSNTFPTDYVPTVFDNFSANVVVDGSTVNLGLWDTAGQEDYNRLRPLSYRGADVFLLAFSLISKASYENV--AKKWIPELRHYAPGVPIILVGTKLDLRDDKQFLADHPGAVPITTAQGEELRKLIGAPVYIECSSKTQQNVKAVFDAAIK 563
            A  + + + TF   Y PT+ D +   + VD S   L + DTAG E +  +R L  +    F+L +SL+++ S++++   +  I  ++ Y   VP+ILVG K+DL  +++          + +++G  L +  G P ++E S+K++  V  +F   ++
Sbjct:   18 ALTVQFVTGTFIEKYDPTIEDFYRKEIEVDSSPSVLEILDTAGTEQFASMRDLYIKNGQGFILVYSLVNQQSFQDIKPMRDQIVRVKRYEK-VPLILVGNKVDLEPERE----------VMSSEGRALAQEWGCP-FMETSAKSKSMVDELFAEIVR 162          
BLAST of BQ623186 vs. ExPASy Swiss-Prot
Match: RAP2C_BOVIN (Ras-related protein Rap-2c OS=Bos taurus GN=RAP2C PE=2 SV=1)

HSP 1 Score: 70.0922 bits (170), Expect = 9.965e-12
Identity = 43/157 (27.39%), Postives = 83/157 (52.87%), Query Frame = 3
Query:   99 ACVISYTSNTFPTDYVPTVFDNFSANVVVDGSTVNLGLWDTAGQEDYNRLRPLSYRGADVFLLAFSLISKASYENV--AKKWIPELRHYAPGVPIILVGTKLDLRDDKQFLADHPGAVPITTAQGEELRKLIGAPVYIECSSKTQQNVKAVFDAAIK 563
            A  + + + TF   Y PT+ D +   + VD S   L + DTAG E +  +R L  +    F+L +SL+++ S++++   +  I  ++ Y   VP+ILVG K+DL  +++          + +++G  L +  G P ++E S+K++  V  +F   ++
Sbjct:   18 ALTVQFVTGTFIEKYDPTIEDFYRKEIEVDSSPSVLEILDTAGTEQFASMRDLYIKNGQGFILVYSLVNQQSFQDIKPMRDQIVRVKRYEK-VPLILVGNKVDLEPERE----------VMSSEGRALAQEWGCP-FMETSAKSKSMVDELFAEIVR 162          
BLAST of BQ623186 vs. ExPASy Swiss-Prot
Match: RAP2A_PONAB (Ras-related protein Rap-2a OS=Pongo abelii GN=RAP2A PE=2 SV=2)

HSP 1 Score: 70.0922 bits (170), Expect = 9.965e-12
Identity = 46/168 (27.38%), Postives = 87/168 (51.79%), Query Frame = 3
Query:   99 ACVISYTSNTFPTDYVPTVFDNFSANVVVDGSTVNLGLWDTAGQEDYNRLRPLSYRGADVFLLAFSLISKASYENV--AKKWIPELRHYAPGVPIILVGTKLDLRDDKQFLADHPGAVPITTAQGEELRKLIGAPVYIECSSKTQQNVKAVFDAAIK---VVLQPPKN 587
            A  + + + TF   Y PT+ D +   + VD S   L + DTAG E +  +R L  +    F+L +SL+++ S++++   +  I  ++ Y   VP+ILVG K+DL  +++          +++ +G  L +  G P ++E S+K++  V  +F   ++      QP K+
Sbjct:   18 ALTVQFVTGTFIEKYDPTIEDFYRKEIEVDSSPSVLEILDTAGTEQFASMRDLYIKNGQGFILVYSLVNQQSFQDIKPMRDQIIRVKRYEK-VPVILVGNKVDLESERE----------VSSNEGRALAEEWGCP-FMETSAKSKTMVDELFAEIVRQMNYAAQPDKD 173          
BLAST of BQ623186 vs. ExPASy Swiss-Prot
Match: RAP2A_MOUSE (Ras-related protein Rap-2a OS=Mus musculus GN=Rap2a PE=1 SV=2)

HSP 1 Score: 70.0922 bits (170), Expect = 9.965e-12
Identity = 46/168 (27.38%), Postives = 87/168 (51.79%), Query Frame = 3
Query:   99 ACVISYTSNTFPTDYVPTVFDNFSANVVVDGSTVNLGLWDTAGQEDYNRLRPLSYRGADVFLLAFSLISKASYENV--AKKWIPELRHYAPGVPIILVGTKLDLRDDKQFLADHPGAVPITTAQGEELRKLIGAPVYIECSSKTQQNVKAVFDAAIK---VVLQPPKN 587
            A  + + + TF   Y PT+ D +   + VD S   L + DTAG E +  +R L  +    F+L +SL+++ S++++   +  I  ++ Y   VP+ILVG K+DL  +++          +++ +G  L +  G P ++E S+K++  V  +F   ++      QP K+
Sbjct:   18 ALTVQFVTGTFIEKYDPTIEDFYRKEIEVDSSPSVLEILDTAGTEQFASMRDLYIKNGQGFILVYSLVNQQSFQDIKPMRDQIIRVKRYEK-VPVILVGNKVDLESERE----------VSSNEGRALAEEWGCP-FMETSAKSKTMVDELFAEIVRQMNYAAQPDKD 173          
The following BLAST results are available for this feature:
BLAST of BQ623186 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 500
Match NameE-valueIdentityDescription
RAB17_HUMAN9.582e-1232.72Ras-related protein Rab-17 OS=Homo sapiens GN=RAB1... [more]
RAB31_HUMAN9.616e-1228.48Ras-related protein Rab-31 OS=Homo sapiens GN=RAB3... [more]
YPT3_SCHPO9.965e-1229.45GTP-binding protein ypt3 OS=Schizosaccharomyces po... [more]
RB11D_LOTJA9.965e-1232.65Ras-related protein Rab11D OS=Lotus japonicus GN=R... [more]
RASL_COLTR9.965e-1232.00Ras-like protein OS=Colletotrichum trifolii GN=RAS... [more]
RAP2C_MOUSE9.965e-1227.39Ras-related protein Rap-2c OS=Mus musculus GN=Rap2... [more]
RAP2C_HUMAN9.965e-1227.39Ras-related protein Rap-2c OS=Homo sapiens GN=RAP2... [more]
RAP2C_BOVIN9.965e-1227.39Ras-related protein Rap-2c OS=Bos taurus GN=RAP2C ... [more]
RAP2A_PONAB9.965e-1227.38Ras-related protein Rap-2a OS=Pongo abelii GN=RAP2... [more]
RAP2A_MOUSE9.965e-1227.38Ras-related protein Rap-2a OS=Mus musculus GN=Rap2... [more]

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Properties
Property NameValue
Genbank descriptionUSDA-FP_00277 Ridge pineapple sweet orange entire seedling Citrus sinensis cDNA clone USDA-FP_00277 5, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>BQ623186 ID=BQ623186; Name=BQ623186; organism=Citrus sinensis; type=EST; length=610bp
GTAATAAAGATACTGTCTTAAGTGCACGTGGCGCGAGATGAGTGCATCGA
GGTTCATAAAGTGCGTGACGGTCGGTGACGGCGCCGTCGGCAAGACTTGC
ATGCGTCATTTCTTACACCAGCAACACTTTCCCGACGGATTATGTGCCAA
CAGTATTTGACAATTTCAGTGCAAATGTGGTAGTGGATGGAAGCACTGTT
AATCTTGGGTTGTGGGACACTGCAGGCCAGGAAGATTACAATAGACTAAG
ACCATTGAGCTACCGCGGGGCAGATGTCTTCTTACTCGCATTCTCTCTCA
TTAGCAAGGCCAGCTATGAAAATGTTGCTAAGAAATGGATTCCTGAGTTG
AGGCATTATGCACCTGGTGTTCCAATAATTCTTGTCGGGACGAAGCTCGA
TCTTCGGGATGATAAGCAGTTCCTTGCAGATCACCCTGGTGCAGTGCCAA
TTACCACGGCCCAAGGGGAGGAATTGAGAAAGTTGATAGGTGCTCCTGTT
TACATTGAGTGTAGTTCCAAAACACAACAGAATGTGAAAGCTGTCTTTGA
TGCGGCCATCAAGGTGGTTCTCCAGCCGCCAAAGAACACGAAGAAAAAGA
AGAGAAGGCC
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