BQ623186

Overview
NameBQ623186
Unique NameBQ623186
TypeEST
OrganismCitrus sinensis (Sweet orange)
Sequence length610
Libraries
Library NameType
Ridge pineapple sweet orange entire seedlingcdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Alignments
Feature NameTypeLocationAnalysis
Csv1_Contig12 contig Csv1_Contig12:1..610. BLAST: Citrus Unigene V1 Contigs to Prunus persica proteins V1
Homology
BLAST of BQ623186 vs. ExPASy Swiss-Prot
Match: RAB6B_CAEEL (Ras-related protein Rab-6.2 OS=Caenorhabditis elegans GN=rab-6.2 PE=2 SV=1)

HSP 1 Score: 70.0922 bits (170), Expect = 9.965e-12
Identity = 48/154 (31.17%), Postives = 78/154 (50.65%), Query Frame = 3
Query:   93 RLACVISYTSNTFPTDYVPTV-FDNFSANVVVDGSTVNLGLWDTAGQEDYNRLRPLSYRGADVFLLAFSLISKASYENVAKKWIPELR-HYAPGVPIILVGTKLDLRDDKQFLADHPGAVPITTAQGEELRKLIGAPVYIECSSKTQQNVKAVF 548
            + + +  +  ++F   Y  T+  D  S  + ++  TV L LWDTAGQE +  L P   R + V ++ + + +  S+   + KWI ++R      V I+LVG K DL D +Q          +TT +GE   K +   ++IE S+K   NVK +F
Sbjct:   23 KTSLITRFMYDSFDNTYQATIGIDFLSKTMYLEDRTVRLQLWDTAGQERFRSLIPSYIRDSTVAVVVYDITNSNSFHQTS-KWIDDVRTERGSDVIIMLVGNKTDLSDKRQ----------VTTDEGERKAKELNV-MFIETSAKAGYNVKQLF 164          
BLAST of BQ623186 vs. ExPASy Swiss-Prot
Match: RAB5C_PONAB (Ras-related protein Rab-5C OS=Pongo abelii GN=RAB5C PE=2 SV=1)

HSP 1 Score: 70.0922 bits (170), Expect = 9.965e-12
Identity = 47/138 (34.06%), Postives = 70/138 (50.72%), Query Frame = 3
Query:  177 VVVDGSTVNLGLWDTAGQEDYNRLRPLSYRGADVFLLAFSLISKASYENVAKKWIPEL-RHYAPGVPIILVGTKLDLRDDKQFLADHPGAVPITTAQGEELRKLIGAPVYIECSSKTQQNVKAVFDAAIKVVLQPPKN 587
            V +D +TV   +WDTAGQE Y+ L P+ YRGA   ++ + + +  ++   AK W+ EL R  +P + I L G K DL   +        AV    AQ       +   +++E S+KT  NV  +F A  K +   PKN
Sbjct:   63 VCLDDTTVKFEIWDTAGQERYHSLAPMYYRGAQAAIVVYDITNTDTFAR-AKNWVKELQRQASPNIVIALAGNKADLASKR--------AVEFQEAQAYADDNSL---LFMETSAKTAMNVNEIFMAIAKKL---PKN 185          
BLAST of BQ623186 vs. ExPASy Swiss-Prot
Match: RAB5C_MOUSE (Ras-related protein Rab-5C OS=Mus musculus GN=Rab5c PE=1 SV=2)

HSP 1 Score: 70.0922 bits (170), Expect = 9.965e-12
Identity = 47/138 (34.06%), Postives = 70/138 (50.72%), Query Frame = 3
Query:  177 VVVDGSTVNLGLWDTAGQEDYNRLRPLSYRGADVFLLAFSLISKASYENVAKKWIPEL-RHYAPGVPIILVGTKLDLRDDKQFLADHPGAVPITTAQGEELRKLIGAPVYIECSSKTQQNVKAVFDAAIKVVLQPPKN 587
            V +D +TV   +WDTAGQE Y+ L P+ YRGA   ++ + + +  ++   AK W+ EL R  +P + I L G K DL   +        AV    AQ       +   +++E S+KT  NV  +F A  K +   PKN
Sbjct:   63 VCLDDTTVKFEIWDTAGQERYHSLAPMYYRGAQAAIVVYDITNTDTFAR-AKNWVKELQRQASPNIVIALAGNKADLASKR--------AVEFQEAQAYADDNSL---LFMETSAKTAMNVNEIFMAIAKKL---PKN 185          
BLAST of BQ623186 vs. ExPASy Swiss-Prot
Match: RAB5C_HUMAN (Ras-related protein Rab-5C OS=Homo sapiens GN=RAB5C PE=1 SV=2)

HSP 1 Score: 70.0922 bits (170), Expect = 9.965e-12
Identity = 47/138 (34.06%), Postives = 70/138 (50.72%), Query Frame = 3
Query:  177 VVVDGSTVNLGLWDTAGQEDYNRLRPLSYRGADVFLLAFSLISKASYENVAKKWIPEL-RHYAPGVPIILVGTKLDLRDDKQFLADHPGAVPITTAQGEELRKLIGAPVYIECSSKTQQNVKAVFDAAIKVVLQPPKN 587
            V +D +TV   +WDTAGQE Y+ L P+ YRGA   ++ + + +  ++   AK W+ EL R  +P + I L G K DL   +        AV    AQ       +   +++E S+KT  NV  +F A  K +   PKN
Sbjct:   63 VCLDDTTVKFEIWDTAGQERYHSLAPMYYRGAQAAIVVYDITNTDTFAR-AKNWVKELQRQASPNIVIALAGNKADLASKR--------AVEFQEAQAYADDNSL---LFMETSAKTAMNVNEIFMAIAKKL---PKN 185          
BLAST of BQ623186 vs. ExPASy Swiss-Prot
Match: RAB5C_CANFA (Ras-related protein Rab-5C OS=Canis familiaris GN=RAB5C PE=2 SV=1)

HSP 1 Score: 70.0922 bits (170), Expect = 9.965e-12
Identity = 47/138 (34.06%), Postives = 70/138 (50.72%), Query Frame = 3
Query:  177 VVVDGSTVNLGLWDTAGQEDYNRLRPLSYRGADVFLLAFSLISKASYENVAKKWIPEL-RHYAPGVPIILVGTKLDLRDDKQFLADHPGAVPITTAQGEELRKLIGAPVYIECSSKTQQNVKAVFDAAIKVVLQPPKN 587
            V +D +TV   +WDTAGQE Y+ L P+ YRGA   ++ + + +  ++   AK W+ EL R  +P + I L G K DL   +        AV    AQ       +   +++E S+KT  NV  +F A  K +   PKN
Sbjct:   63 VCLDDTTVKFEIWDTAGQERYHSLAPMYYRGAQAAIVVYDITNTDTFAR-AKNWVKELQRQASPNIVIALAGNKADLASKR--------AVEFQEAQAYADDNSL---LFMETSAKTAMNVNEIFMAIAKKL---PKN 185          
BLAST of BQ623186 vs. ExPASy Swiss-Prot
Match: RAN_TETPY (GTP-binding nuclear protein Ran OS=Tetrahymena pyriformis PE=2 SV=1)

HSP 1 Score: 65.0846 bits (157), Expect = 1.242e-11
Identity = 36/105 (34.29%), Postives = 54/105 (51.43%), Query Frame = 3
Query:  105 VISYTSNTFPTDYVPTVFDNFSANVV-VDGSTVNLGLWDTAGQEDYNRLRPLSYRGADVFLLAFSLISKASYENVAKKWIPELRHYAPGVPIILVGTKLDLRDDK 416
            V  + +  F   Y+ T   N S  ++      +   +WDTAGQE    LR   Y GAD  ++ F + S+ +Y+N+  KW  +L      VPI+LVG K+D +D K
Sbjct:   28 VTRHQTGEFEKRYIATQGVNVSNMILHTTKGAIRFNIWDTAGQEKLGGLREGYYIGADAAIMMFDVTSRITYKNI-PKWHKDLTRICENVPIVLVGNKVDSKDSK 131          

HSP 2 Score: 23.483 bits (49), Expect = 1.242e-11
Identity = 10/13 (76.92%), Postives = 10/13 (76.92%), Query Frame = 2
Query:   59 KCVTVGDGAVGKT 97
            K V VGDG VGKT
Sbjct:   13 KLVLVGDGGVGKT 25          
BLAST of BQ623186 vs. ExPASy Swiss-Prot
Match: RAB13_RAT (Ras-related protein Rab-13 OS=Rattus norvegicus GN=Rab13 PE=2 SV=2)

HSP 1 Score: 64.6994 bits (156), Expect = 1.246e-11
Identity = 40/158 (25.32%), Postives = 78/158 (49.37%), Query Frame = 3
Query:  105 VISYTSNTFPTDYVPTVFDNFSANVV-VDGSTVNLGLWDTAGQEDYNRLRPLSYRGADVFLLAFSLISKASYENVAKKWIPELRHYA-PGVPIILVGTKLDLRDDKQFLADHPGAVPITTAQGEELRKLIGAPVYIECSSKTQQNVKAVFDAAIKVVL 572
            +I +  + F + Y+ T+  +F    V ++G  + L +WDTAGQE +  +    YRGA   +L + +  + S+EN+ + W+  ++  A  GV  +L+G K D+   ++   +    +    A+   +R       + E S+K+  NV   F +  + +L
Sbjct:   25 IIRFAEDNFNSTYISTIGIDFKIRTVEIEGKRIKLQVWDTAGQERFKTITTAYYRGAMGIILVYDITDEKSFENI-QNWMKSIKENASAGVERLLLGNKCDMEAKRKVQREQAERL----AREHRIR-------FFETSAKSSVNVDEAFSSLARDIL 170          

HSP 2 Score: 23.8682 bits (50), Expect = 1.246e-11
Identity = 8/15 (53.33%), Postives = 11/15 (73.33%), Query Frame = 2
Query:   59 KCVTVGDGAVGKTCM 103
            K + +GD  VGKTC+
Sbjct:   10 KLLLIGDSGVGKTCL 24          
BLAST of BQ623186 vs. ExPASy Swiss-Prot
Match: YPT10_YEAST (GTP-binding protein YPT10 OS=Saccharomyces cerevisiae GN=YPT10 PE=1 SV=2)

HSP 1 Score: 66.6254 bits (161), Expect = 1.248e-11
Identity = 47/132 (35.61%), Postives = 68/132 (51.52%), Query Frame = 3
Query:  186 DGST---VNLGLWDTAGQEDYNRLRPLSYRGADVFLLAFSLISKASYENVAKKWIPELRHYAPGVPIILVGTKLDLRDDKQFLADHPGAVPITTAQGEELRKLIGAPVYIECSSKTQQNVKAVFDAAIKVVL 572
            D ST   +++ +WDTAGQE Y  L P+ YR A++ L+ F L   +S +  AK W  +L+  A G  +I+VG K DL        +H G V I         +L G P Y+  S+KT  N    FD   K+++
Sbjct:   52 DSSTEKRIHMEIWDTAGQERYKSLVPMYYRDANIALIVFELGDVSSLQ-CAKTWFQDLQDRAQGTQVIIVGNKYDL-----VCEEHSGEVTIPA-------ELQGLP-YVAVSAKTGYN----FDTLNKIII 165          

HSP 2 Score: 21.9422 bits (45), Expect = 1.248e-11
Identity = 9/14 (64.29%), Postives = 11/14 (78.57%), Query Frame = 2
Query:   56 IKCVTVGDGAVGKT 97
            IK V +GD +VGKT
Sbjct:    5 IKVVLLGDSSVGKT 18          
BLAST of BQ623186 vs. ExPASy Swiss-Prot
Match: RAS_CRYNE (Ras-like protein OS=Cryptococcus neoformans GN=RAS1 PE=2 SV=1)

HSP 1 Score: 69.707 bits (169), Expect = 1.301e-11
Identity = 47/165 (28.48%), Postives = 80/165 (48.48%), Query Frame = 3
Query:   99 ACVISYTSNTFPTDYVPTVFDNFSANVVVDGSTVNLGLWDTAGQEDYNRLRPLSYRGADVFLLAFSLISKASYENVAKKWIPELR-HYAPGVPIILVGTKLDLRDDKQFLADHPGAVPITTAQGEELRKLIGAPVYIECSSKTQQNVKAVFDAAIKVVLQPPKNT 590
            A  I +  + F  +Y PT+ D++    ++D     L + DTAGQE+Y  +R    R  + FLL +S+ S++S+E V+      LR       P+++V  K DL  ++Q          +   +G +L K   A   IE S+K + NV   F A ++ + +  K +
Sbjct:   24 ALTIQFIQSHFVDEYDPTIEDSYRKQCIIDEEVALLDVLDTAGQEEYGAMREQYMRTGEGFLLVYSITSRSSFEEVSTFHQQILRVKDKDYFPVVVVANKCDLEYERQ----------VQPHEGRDLAKRFNAQC-IETSAKQRVNVDEAFIAVVRAIRRYQKES 177          
BLAST of BQ623186 vs. ExPASy Swiss-Prot
Match: RAP1B_CYPCA (Ras-related protein Rap-1b OS=Cyprinus carpio GN=rap1b PE=2 SV=1)

HSP 1 Score: 69.707 bits (169), Expect = 1.301e-11
Identity = 47/171 (27.49%), Postives = 82/171 (47.95%), Query Frame = 3
Query:   99 ACVISYTSNTFPTDYVPTVFDNFSANVVVDGSTVNLGLWDTAGQEDYNRLRPLSYRGADVFLLAFSLISKASYENVAKKWIPELR-HYAPGVPIILVGTKLDLRDDKQFLADHPGAVPITTAQGEELRKLIGAPVYIECSSKTQQNVKAVF-DAAIKVVLQPPKNTKKKKR 605
            A  + +    F   Y PT+ D++   V VDG    L + DTAG E +  +R L  +    F L +S+ +++++ ++       LR      VPIILVG K DL D++           +   QG+ L +   +  ++E S+K++ NV  +F D   ++  + P   K +K+
Sbjct:   18 ALTVQFVQGIFVEKYDPTIEDSYRKQVEVDGQQCMLEILDTAGTEQFTAMRDLYMKNGQGFALVYSITAQSTFNDLQDLREQILRVKDTDDVPIILVGNKCDLEDER----------VVGKEQGQNLARQWNSCAFLESSAKSKINVNEIFYDLVRQINRKTPVPGKARKK 178          
The following BLAST results are available for this feature:
BLAST of BQ623186 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 500
Match NameE-valueIdentityDescription
RAB6B_CAEEL9.965e-1231.17Ras-related protein Rab-6.2 OS=Caenorhabditis eleg... [more]
RAB5C_PONAB9.965e-1234.06Ras-related protein Rab-5C OS=Pongo abelii GN=RAB5... [more]
RAB5C_MOUSE9.965e-1234.06Ras-related protein Rab-5C OS=Mus musculus GN=Rab5... [more]
RAB5C_HUMAN9.965e-1234.06Ras-related protein Rab-5C OS=Homo sapiens GN=RAB5... [more]
RAB5C_CANFA9.965e-1234.06Ras-related protein Rab-5C OS=Canis familiaris GN=... [more]
RAN_TETPY1.242e-1134.29GTP-binding nuclear protein Ran OS=Tetrahymena pyr... [more]
RAB13_RAT1.246e-1125.32Ras-related protein Rab-13 OS=Rattus norvegicus GN... [more]
YPT10_YEAST1.248e-1135.61GTP-binding protein YPT10 OS=Saccharomyces cerevis... [more]
RAS_CRYNE1.301e-1128.48Ras-like protein OS=Cryptococcus neoformans GN=RAS... [more]
RAP1B_CYPCA1.301e-1127.49Ras-related protein Rap-1b OS=Cyprinus carpio GN=r... [more]

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Properties
Property NameValue
Genbank descriptionUSDA-FP_00277 Ridge pineapple sweet orange entire seedling Citrus sinensis cDNA clone USDA-FP_00277 5, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>BQ623186 ID=BQ623186; Name=BQ623186; organism=Citrus sinensis; type=EST; length=610bp
GTAATAAAGATACTGTCTTAAGTGCACGTGGCGCGAGATGAGTGCATCGA
GGTTCATAAAGTGCGTGACGGTCGGTGACGGCGCCGTCGGCAAGACTTGC
ATGCGTCATTTCTTACACCAGCAACACTTTCCCGACGGATTATGTGCCAA
CAGTATTTGACAATTTCAGTGCAAATGTGGTAGTGGATGGAAGCACTGTT
AATCTTGGGTTGTGGGACACTGCAGGCCAGGAAGATTACAATAGACTAAG
ACCATTGAGCTACCGCGGGGCAGATGTCTTCTTACTCGCATTCTCTCTCA
TTAGCAAGGCCAGCTATGAAAATGTTGCTAAGAAATGGATTCCTGAGTTG
AGGCATTATGCACCTGGTGTTCCAATAATTCTTGTCGGGACGAAGCTCGA
TCTTCGGGATGATAAGCAGTTCCTTGCAGATCACCCTGGTGCAGTGCCAA
TTACCACGGCCCAAGGGGAGGAATTGAGAAAGTTGATAGGTGCTCCTGTT
TACATTGAGTGTAGTTCCAAAACACAACAGAATGTGAAAGCTGTCTTTGA
TGCGGCCATCAAGGTGGTTCTCCAGCCGCCAAAGAACACGAAGAAAAAGA
AGAGAAGGCC
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