BQ623186

Overview
NameBQ623186
Unique NameBQ623186
TypeEST
OrganismCitrus sinensis (Sweet orange)
Sequence length610
Libraries
Library NameType
Ridge pineapple sweet orange entire seedlingcdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Alignments
Feature NameTypeLocationAnalysis
Csv1_Contig12 contig Csv1_Contig12:1..610. BLAST: Citrus Unigene V1 Contigs to Prunus persica proteins V1
Homology
BLAST of BQ623186 vs. ExPASy Swiss-Prot
Match: RAB10_CHICK (Ras-related protein Rab-10 OS=Gallus gallus GN=RAB10 PE=2 SV=1)

HSP 1 Score: 63.929 bits (154), Expect = 2.730e-11
Identity = 42/152 (27.63%), Postives = 77/152 (50.66%), Query Frame = 3
Query:  102 CVI-SYTSNTFPTDYVPTV-FDNFSANVVVDGSTVNLGLWDTAGQEDYNRLRPLSYRGADVFLLAFSLISKASYENVAKKWIPEL-RHYAPGVPIILVGTKLDLRDDKQFLADHPGAVPITTAQGEELRKLIGAPVYIECSSKTQQNVKAVF 548
            CV+  ++ + F T ++ T+  D     V + G  + L +WDTAGQE ++ +    YRGA   +L + + +  S+EN++ KW+  +  H    V  +L+G K D+ D +           +  A+GE++ +  G   + E S+K   N++  F
Sbjct:   24 CVLFRFSDDAFNTTFISTIGIDLKIKTVELQGKKIKLQIWDTAGQERFHTITTSYYRGAMGIMLVYDITNAKSFENIS-KWLRNIDEHANEDVERMLLGNKCDMEDKR----------VVPKAKGEQIAREHGIR-FFETSAKANINIEKAF 163          

HSP 2 Score: 23.483 bits (49), Expect = 2.730e-11
Identity = 8/15 (53.33%), Postives = 11/15 (73.33%), Query Frame = 2
Query:   59 KCVTVGDGAVGKTCM 103
            K + +GD  VGKTC+
Sbjct:   11 KLLLIGDSGVGKTCV 25          
BLAST of BQ623186 vs. ExPASy Swiss-Prot
Match: RYH1_SCHPO (GTP-binding protein ryh1 OS=Schizosaccharomyces pombe GN=ryh1 PE=1 SV=1)

HSP 1 Score: 68.5514 bits (166), Expect = 2.899e-11
Identity = 47/154 (30.52%), Postives = 78/154 (50.65%), Query Frame = 3
Query:   93 RLACVISYTSNTFPTDYVPTV-FDNFSANVVVDGSTVNLGLWDTAGQEDYNRLRPLSYRGADVFLLAFSLISKASYENVAKKWIPELR-HYAPGVPIILVGTKLDLRDDKQFLADHPGAVPITTAQGEELRKLIGAPVYIECSSKTQQNVKAVF 548
            + + +  +  + F   Y  T+  D  S  + ++  TV L LWDTAGQE +  L P   R + V ++ + + +  S+ N  +KWI ++R      V I+LVG K DL D +Q          +T  +GE+  K +   +++E S+K   NVK +F
Sbjct:   24 KTSLITRFMYDQFDNTYQATIGIDFLSKTMYLEDRTVRLQLWDTAGQERFRSLIPSYIRDSSVAIIVYDITNHNSFVN-TEKWIEDVRAERGDDVIIVLVGNKTDLADKRQ----------VTQEEGEKKAKELKI-MHMETSAKAGHNVKLLF 165          
BLAST of BQ623186 vs. ExPASy Swiss-Prot
Match: RIT1_HUMAN (GTP-binding protein Rit1 OS=Homo sapiens GN=RIT1 PE=1 SV=1)

HSP 1 Score: 68.5514 bits (166), Expect = 2.899e-11
Identity = 43/164 (26.22%), Postives = 79/164 (48.17%), Query Frame = 3
Query:   99 ACVISYTSNTFPTDYVPTVFDNFSANVVVDGSTVNLGLWDTAGQEDYNRLRPLSYRGADVFLLAFSLISKASYENVA--KKWIPELRHYAPGVPIILVGTKLDLRDDKQFLADHPGAVPITTAQGEELRKLIGAPVYIECSSKTQQNVKAVFDAAIKVVLQPPK 584
            A  + + S+ FP D+ PT+ D +   + +D    NL + DTAGQ ++  +R    R  + F++ +S+  + S+  V   K+ I  +R      P++LVG K DL+  +Q          +T  +G  L +    P + E S+  +  +  VF A ++ + +  K
Sbjct:   36 AMTMQFISHRFPEDHDPTIEDAYKIRIRIDDEPANLDILDTAGQAEFTAMRDQYMRAGEGFIICYSITDRRSFHEVREFKQLIYRVRR-TDDTPVVLVGNKSDLKQLRQ----------VTKEEGLALAREFSCP-FFETSAAYRYYIDDVFHALVREIRRKEK 187          
BLAST of BQ623186 vs. ExPASy Swiss-Prot
Match: RASEF_DANRE (RAS and EF-hand domain-containing protein OS=Danio rerio GN=rasef PE=2 SV=1)

HSP 1 Score: 68.5514 bits (166), Expect = 2.899e-11
Identity = 50/177 (28.25%), Postives = 91/177 (51.41%), Query Frame = 3
Query:   81 APSARLACVISYTSNTFPTDYVPTVFDNFSAN-VVVDGSTVNLGLWDTAGQEDYNRLRPLSYRGADVFLLAFSLISKASYENVAKKWIPELRHYA-PGVPIILVGTKLDLRDDKQFLADHPGAVPITTAQGEELRKLIGAPVYIECSSKTQQNVKAVFDAAIKVVLQPPKNTKKKKR 605
            A S + + ++  + N F  D   T+  +F    ++VDG   NL +WDTAGQE +  +    +R A   LL + + S++S+ NV ++W+ ++R      +P+ ++G K+DLR      A  P    +++  GE+L     A ++ E S+K   N   V +A + +  +  K+ K  +R
Sbjct:  476 AGSGKSSFLLRLSLNEFRGDIQTTLGVDFQIKKMLVDGEKTNLQIWDTAGQERFRSIARSYFRKAHGVLLLYDVTSESSFLNV-REWVEQIRESTDEDIPMCIIGNKVDLR------AARPEGSCVSSIHGEKLAMNYNA-LFCEASAKEGTN---VIEAVLHLAREVKKHVKLGRR 641          
BLAST of BQ623186 vs. ExPASy Swiss-Prot
Match: RAB5C_CHICK (Ras-related protein Rab-5C OS=Gallus gallus GN=RAB5C PE=1 SV=1)

HSP 1 Score: 68.5514 bits (166), Expect = 2.899e-11
Identity = 48/138 (34.78%), Postives = 70/138 (50.72%), Query Frame = 3
Query:  177 VVVDGSTVNLGLWDTAGQEDYNRLRPLSYRGADVFLLAFSLISKASYENVAKKWIPEL-RHYAPGVPIILVGTKLDLRDDKQFLADHPGAVPITTAQGEELRKLIGAPVYIECSSKTQQNVKAVFDAAIKVVLQPPKN 587
            V +D +TV   +WDTAGQE Y+ L P+ YRGA   ++ + + +  ++   AK W+ EL R  +P + I L G K DL   +    D   A   T A    L       +++E S+KT  NV  +F A  K +   PKN
Sbjct:   63 VCLDDTTVKFEIWDTAGQERYHSLAPMYYRGAQAAIVVYDITNTDTFVR-AKNWVKELQRQASPNIVIALAGNKADLATKR--AVDFQDAQ--TYADDNSL-------LFMETSAKTAMNVNEIFMAIAKKL---PKN 185          
BLAST of BQ623186 vs. ExPASy Swiss-Prot
Match: RAB5B_PONAB (Ras-related protein Rab-5B OS=Pongo abelii GN=RAB5B PE=2 SV=1)

HSP 1 Score: 68.5514 bits (166), Expect = 2.899e-11
Identity = 46/140 (32.86%), Postives = 73/140 (52.14%), Query Frame = 3
Query:  174 NVVVDGSTVNLGLWDTAGQEDYNRLRPLSYRGADVFLLAFSLISKASYENVAKKWIPEL-RHYAPGVPIILVGTKLDLRDDKQFLADHPGAVPITTAQGEELRKLIGAPVYIECSSKTQQNVKAVFDA-AIKVVLQPPKN 587
            +V +D +TV   +WDTAGQE Y+ L P+ YRGA   ++ + + ++ ++   AK W+ EL R  +P + I L G K DL + +    +   A     A    L       +++E S+KT  NV  +F A A K+    P+N
Sbjct:   61 SVCLDDTTVKFEIWDTAGQERYHSLAPMYYRGAQAAIVVYDITNQETFAR-AKTWVKELQRQASPSIVIALAGNKADLANKRMVEYEEAQAY----ADDNSL-------LFMETSAKTAMNVNDLFLAIAKKLPKSEPQN 188          
BLAST of BQ623186 vs. ExPASy Swiss-Prot
Match: RAB5B_MOUSE (Ras-related protein Rab-5B OS=Mus musculus GN=Rab5b PE=1 SV=1)

HSP 1 Score: 68.5514 bits (166), Expect = 2.899e-11
Identity = 46/140 (32.86%), Postives = 73/140 (52.14%), Query Frame = 3
Query:  174 NVVVDGSTVNLGLWDTAGQEDYNRLRPLSYRGADVFLLAFSLISKASYENVAKKWIPEL-RHYAPGVPIILVGTKLDLRDDKQFLADHPGAVPITTAQGEELRKLIGAPVYIECSSKTQQNVKAVFDA-AIKVVLQPPKN 587
            +V +D +TV   +WDTAGQE Y+ L P+ YRGA   ++ + + ++ ++   AK W+ EL R  +P + I L G K DL + +    +   A     A    L       +++E S+KT  NV  +F A A K+    P+N
Sbjct:   61 SVCLDDTTVKFEIWDTAGQERYHSLAPMYYRGAQAAIVVYDITNQETFAR-AKTWVKELQRQASPSIVIALAGNKADLANKRMVEYEEAQAY----ADDNSL-------LFMETSAKTAMNVNDLFLAIAKKLPKSEPQN 188          
BLAST of BQ623186 vs. ExPASy Swiss-Prot
Match: RAB5B_HUMAN (Ras-related protein Rab-5B OS=Homo sapiens GN=RAB5B PE=1 SV=1)

HSP 1 Score: 68.5514 bits (166), Expect = 2.899e-11
Identity = 46/140 (32.86%), Postives = 73/140 (52.14%), Query Frame = 3
Query:  174 NVVVDGSTVNLGLWDTAGQEDYNRLRPLSYRGADVFLLAFSLISKASYENVAKKWIPEL-RHYAPGVPIILVGTKLDLRDDKQFLADHPGAVPITTAQGEELRKLIGAPVYIECSSKTQQNVKAVFDA-AIKVVLQPPKN 587
            +V +D +TV   +WDTAGQE Y+ L P+ YRGA   ++ + + ++ ++   AK W+ EL R  +P + I L G K DL + +    +   A     A    L       +++E S+KT  NV  +F A A K+    P+N
Sbjct:   61 SVCLDDTTVKFEIWDTAGQERYHSLAPMYYRGAQAAIVVYDITNQETFAR-AKTWVKELQRQASPSIVIALAGNKADLANKRMVEYEEAQAY----ADDNSL-------LFMETSAKTAMNVNDLFLAIAKKLPKSEPQN 188          
BLAST of BQ623186 vs. ExPASy Swiss-Prot
Match: RAB12_HUMAN (Putative Ras-related protein Rab-12 OS=Homo sapiens GN=RAB12 PE=5 SV=3)

HSP 1 Score: 68.5514 bits (166), Expect = 2.899e-11
Identity = 46/156 (29.49%), Postives = 76/156 (48.72%), Query Frame = 3
Query:  114 YTSNTFPTDYVPTVFDNFSANVV-VDGSTVNLGLWDTAGQEDYNRLRPLSYRGADVFLLAFSLISKASYENVAKKWIPELRHYA-PGVPIILVGTKLDLRDDKQFLADHPGAVPITTAQGEELRKLIGAPVYIECSSKTQQNVKAVFDAAIKVVLQ 575
            +T +TF      TV  +F    V + G  + L +WDTAGQE +N +    YR A   +L + +  K +++++  KW+  +  YA     ++LVG KLD   D++          IT  QGE+  + I    + E S+K   NV  +F   +  +L+
Sbjct:   62 FTDDTFCEACKSTVGVDFKIKTVELRGKKIRLQIWDTAGQERFNSITSAYYRSAKGIILVYDITKKETFDDL-PKWMKMIDKYASEDAELLLVGNKLDCETDRE----------ITRQQGEKFAQQITGMRFCEASAKDNFNVDEIFLKLVDDILK 206          
BLAST of BQ623186 vs. ExPASy Swiss-Prot
Match: RAB8A_DICDI (Ras-related protein Rab-8A OS=Dictyostelium discoideum GN=rab8A PE=3 SV=1)

HSP 1 Score: 63.1586 bits (152), Expect = 3.539e-11
Identity = 39/155 (25.16%), Postives = 78/155 (50.32%), Query Frame = 3
Query:  105 VISYTSNTFPTDYVPTVFDNFSANVV-VDGSTVNLGLWDTAGQEDYNRLRPLSYRGADVFLLAFSLISKASYENVAKKWIPEL-RHYAPGVPIILVGTKLDLRDDKQFLADHPGAVPITTAQGEELRKLIGAPVYIECSSKTQQNVKAVFDAAIK 563
            ++ ++ ++F   ++ T+  +F    + ++G  + L +WDTAGQE +  +    YRGA   LL + +  + S+ N+ + WI  + +H    V  +L+G K D+ + K           + +++G+ L    G   ++E S+K   NV+  F +  K
Sbjct:   32 LLRFSEDSFTPSFITTIGIDFKIRTIELEGKRIKLQIWDTAGQERFRTITTAYYRGAMGILLVYDVTDEKSFGNI-RNWIRNIEQHATDSVNKMLIGNKCDMAEKK----------VVDSSRGKSLADEYGIK-FLETSAKNSINVEEAFISLAK 174          

HSP 2 Score: 23.8682 bits (50), Expect = 3.539e-11
Identity = 8/16 (50.00%), Postives = 12/16 (75.00%), Query Frame = 2
Query:   56 IKCVTVGDGAVGKTCM 103
            IK + +GD  VGK+C+
Sbjct:   16 IKLLLIGDSGVGKSCL 31          
The following BLAST results are available for this feature:
BLAST of BQ623186 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 500
Match NameE-valueIdentityDescription
RAB10_CHICK2.730e-1127.63Ras-related protein Rab-10 OS=Gallus gallus GN=RAB... [more]
RYH1_SCHPO2.899e-1130.52GTP-binding protein ryh1 OS=Schizosaccharomyces po... [more]
RIT1_HUMAN2.899e-1126.22GTP-binding protein Rit1 OS=Homo sapiens GN=RIT1 P... [more]
RASEF_DANRE2.899e-1128.25RAS and EF-hand domain-containing protein OS=Danio... [more]
RAB5C_CHICK2.899e-1134.78Ras-related protein Rab-5C OS=Gallus gallus GN=RAB... [more]
RAB5B_PONAB2.899e-1132.86Ras-related protein Rab-5B OS=Pongo abelii GN=RAB5... [more]
RAB5B_MOUSE2.899e-1132.86Ras-related protein Rab-5B OS=Mus musculus GN=Rab5... [more]
RAB5B_HUMAN2.899e-1132.86Ras-related protein Rab-5B OS=Homo sapiens GN=RAB5... [more]
RAB12_HUMAN2.899e-1129.49Putative Ras-related protein Rab-12 OS=Homo sapien... [more]
RAB8A_DICDI3.539e-1125.16Ras-related protein Rab-8A OS=Dictyostelium discoi... [more]

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Properties
Property NameValue
Genbank descriptionUSDA-FP_00277 Ridge pineapple sweet orange entire seedling Citrus sinensis cDNA clone USDA-FP_00277 5, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>BQ623186 ID=BQ623186; Name=BQ623186; organism=Citrus sinensis; type=EST; length=610bp
GTAATAAAGATACTGTCTTAAGTGCACGTGGCGCGAGATGAGTGCATCGA
GGTTCATAAAGTGCGTGACGGTCGGTGACGGCGCCGTCGGCAAGACTTGC
ATGCGTCATTTCTTACACCAGCAACACTTTCCCGACGGATTATGTGCCAA
CAGTATTTGACAATTTCAGTGCAAATGTGGTAGTGGATGGAAGCACTGTT
AATCTTGGGTTGTGGGACACTGCAGGCCAGGAAGATTACAATAGACTAAG
ACCATTGAGCTACCGCGGGGCAGATGTCTTCTTACTCGCATTCTCTCTCA
TTAGCAAGGCCAGCTATGAAAATGTTGCTAAGAAATGGATTCCTGAGTTG
AGGCATTATGCACCTGGTGTTCCAATAATTCTTGTCGGGACGAAGCTCGA
TCTTCGGGATGATAAGCAGTTCCTTGCAGATCACCCTGGTGCAGTGCCAA
TTACCACGGCCCAAGGGGAGGAATTGAGAAAGTTGATAGGTGCTCCTGTT
TACATTGAGTGTAGTTCCAAAACACAACAGAATGTGAAAGCTGTCTTTGA
TGCGGCCATCAAGGTGGTTCTCCAGCCGCCAAAGAACACGAAGAAAAAGA
AGAGAAGGCC
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