BQ623186

Overview
NameBQ623186
Unique NameBQ623186
TypeEST
OrganismCitrus sinensis (Sweet orange)
Sequence length610
Libraries
Library NameType
Ridge pineapple sweet orange entire seedlingcdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Alignments
Feature NameTypeLocationAnalysis
Csv1_Contig12 contig Csv1_Contig12:1..610. BLAST: Citrus Unigene V1 Contigs to Prunus persica proteins V1
Homology
[Close]
BLAST of BQ623186 vs. ExPASy Swiss-Prot
Match: RAB18_CHICK (Ras-related protein Rab-18 OS=Gallus gallus GN=RAB18 PE=2 SV=1)

HSP 1 Score: 67.781 bits (164), Expect = 4.945e-11
Identity = 43/162 (26.54%), Postives = 80/162 (49.38%), Query Frame = 3 
Query:  105 VISYTSNTFPTDYVPTVFDNFSANVV-VDGSTVNLGLWDTAGQEDYNRLRPLSYRGADVFLLAFSLISKASYENVAKKWIPELRHYAPGVPII--LVGTKLDLRDDKQFLADHPGAVPITTAQGEELRKLIGAPVYIECSSKTQQNVKAVFDAAIKVVLQPP 581
            ++ +T +TF  +   T+  +F    + VDG+   L +WDTAGQE +  L P  YRGA   +L + +  + ++  +   W+ EL  Y     I+  LVG K+D  + +           +   +G +  +   + ++IE S+KT   V+  F+  ++ ++Q P
Sbjct:   25 LLRFTDDTFDPELAATIGVDFKVKTISVDGNKAKLAIWDTAGQERFRTLTPSYYRGAQGVILVYDVTRRDTFVKL-DNWLNELETYCTRNDIVKMLVGNKIDKENRE-----------VDRNEGLKFARK-HSMLFIEASAKTCDGVQCAFEELVEKIIQTP 173
[Close]
BLAST of BQ623186 vs. ExPASy Swiss-Prot
Match: RAB18_BOVIN (Ras-related protein Rab-18 OS=Bos taurus GN=RAB18 PE=2 SV=1)

HSP 1 Score: 67.781 bits (164), Expect = 4.945e-11
Identity = 43/162 (26.54%), Postives = 80/162 (49.38%), Query Frame = 3 
Query:  105 VISYTSNTFPTDYVPTVFDNFSANVV-VDGSTVNLGLWDTAGQEDYNRLRPLSYRGADVFLLAFSLISKASYENVAKKWIPELRHYAPGVPII--LVGTKLDLRDDKQFLADHPGAVPITTAQGEELRKLIGAPVYIECSSKTQQNVKAVFDAAIKVVLQPP 581
            ++ +T +TF  +   T+  +F    + VDG+   L +WDTAGQE +  L P  YRGA   +L + +  + ++  +   W+ EL  Y     I+  LVG K+D  + +           +   +G +  +   + ++IE S+KT   V+  F+  ++ ++Q P
Sbjct:   25 LLRFTDDTFDPELAATIGVDFKVKTISVDGNKAKLAIWDTAGQERFRTLTPSYYRGAQGVILVYDVTRRDTFVKL-DNWLNELETYCTRNDIVNMLVGNKIDKENRE-----------VDRNEGLKFARK-HSMLFIEASAKTCDGVQCAFEELVEKIIQTP 173
[Close]
BLAST of BQ623186 vs. ExPASy Swiss-Prot
Match: RAA1A_ARATH (Ras-related protein RABA1a OS=Arabidopsis thaliana GN=RABA1A PE=2 SV=1)

HSP 1 Score: 67.781 bits (164), Expect = 4.945e-11
Identity = 38/100 (38.00%), Postives = 55/100 (55.00%), Query Frame = 3 
Query:  114 YTSNTFPTDYVPTVFDNFSANVV-VDGSTVNLGLWDTAGQEDYNRLRPLSYRGADVFLLAFSLISKASYENVAKKWIPELR-HYAPGVPIILVGTKLDLR 407
            +T N F  +   T+   F+     V+G  V   +WDTAGQE Y  +    YRGA   LL + +   A++EN A +W+ ELR H  P + ++L+G K DLR
Sbjct:   33 FTKNEFNLESKSTIGVEFATKTTKVEGKVVKAQIWDTAGQERYRAITSAYYRGAVGALLIYDVTRHATFENAA-RWLRELRGHTDPNIVVMLIGNKCDLR 131
[Close]
BLAST of BQ623186 vs. ExPASy Swiss-Prot
Match: RAB2B_HUMAN (Ras-related protein Rab-2B OS=Homo sapiens GN=RAB2B PE=1 SV=1)

HSP 1 Score: 63.1586 bits (152), Expect = 5.955e-11
Identity = 41/150 (27.33%), Postives = 74/150 (49.33%), Query Frame = 3 
Query:  105 VISYTSNTFPTDYVPTVFDNFSANVV-VDGSTVNLGLWDTAGQEDYNRLRPLSYRGADVFLLAFSLISKASYENVAKKWIPELR-HYAPGVPIILVGTKLDLRDDKQFLADHPGAVPITTAQGEELRKLIGAPVYIECSSKTQQNVKAVF 548
            ++ +T   F   +  T+   F A +V +DG  + L +WDTAGQE +  +    YRGA   LL + +  + ++ ++   W+ + R H +  + I+L+G K DL   +           +   +GE   +  G  +++E S+KT  NV+  F
Sbjct:   23 LLQFTDKRFQPVHDLTIGVEFGARMVNIDGKQIKLQIWDTAGQESFRSITRSYYRGAAGALLVYDITRRETFNHLT-SWLEDARQHSSSNMVIMLIGNKSDLESRRD----------VKREEGEAFAREHGL-IFMETSAKTACNVEEAF 160

HSP 2 Score: 23.0978 bits (48), Expect = 5.955e-11
Identity = 8/22 (36.36%), Postives = 14/22 (63.64%), Query Frame = 2 
Query:   38 MSASRFIKCVTVGDGAVGKTCM 103
            M+ +   K + +GD  VGK+C+
Sbjct:    1 MTYAYLFKYIIIGDTGVGKSCL 22
[Close]
BLAST of BQ623186 vs. ExPASy Swiss-Prot
Match: RAB2A_RABIT (Ras-related protein Rab-2A OS=Oryctolagus cuniculus GN=RAB2A PE=2 SV=1)

HSP 1 Score: 63.1586 bits (152), Expect = 5.958e-11
Identity = 41/159 (25.79%), Postives = 77/159 (48.43%), Query Frame = 3 
Query:  105 VISYTSNTFPTDYVPTVFDNFSANVV-VDGSTVNLGLWDTAGQEDYNRLRPLSYRGADVFLLAFSLISKASYENVAKKWIPELR-HYAPGVPIILVGTKLDLRDDKQFLADHPGAVPITTAQGEELRKLIGAPVYIECSSKTQQNVKAVFDAAIKVVLQ 575
            ++ +T   F   +  T+   F A ++ +DG  + L +WDTAGQE +  +    YRGA   LL + +  + ++ ++   W+ + R H    + I+L+G K DL   ++          +   +GE   +  G  +++E S+KT  NV+  F    K + +
Sbjct:   23 LLQFTDKRFQPVHDLTIGVEFGARMITIDGKQIKLQIWDTAGQESFRSITRSYYRGAAGALLVYDITRRDTFNHLT-TWLEDARQHSNSNMVIMLIGNKSDLESRRE----------VKKEEGEAFAREHGL-IFMETSAKTASNVEEAFINTAKEIYE 169

HSP 2 Score: 23.0978 bits (48), Expect = 5.958e-11
Identity = 8/22 (36.36%), Postives = 14/22 (63.64%), Query Frame = 2 
Query:   38 MSASRFIKCVTVGDGAVGKTCM 103
            M+ +   K + +GD  VGK+C+
Sbjct:    1 MAYAYLFKYIIIGDTGVGKSCL 22
[Close]
BLAST of BQ623186 vs. ExPASy Swiss-Prot
Match: RAB2A_PONAB (Ras-related protein Rab-2A OS=Pongo abelii GN=RAB2A PE=2 SV=1)

HSP 1 Score: 63.1586 bits (152), Expect = 5.958e-11
Identity = 41/159 (25.79%), Postives = 77/159 (48.43%), Query Frame = 3 
Query:  105 VISYTSNTFPTDYVPTVFDNFSANVV-VDGSTVNLGLWDTAGQEDYNRLRPLSYRGADVFLLAFSLISKASYENVAKKWIPELR-HYAPGVPIILVGTKLDLRDDKQFLADHPGAVPITTAQGEELRKLIGAPVYIECSSKTQQNVKAVFDAAIKVVLQ 575
            ++ +T   F   +  T+   F A ++ +DG  + L +WDTAGQE +  +    YRGA   LL + +  + ++ ++   W+ + R H    + I+L+G K DL   ++          +   +GE   +  G  +++E S+KT  NV+  F    K + +
Sbjct:   23 LLQFTDKRFQPVHDLTIGVEFGARMITIDGKQIKLQIWDTAGQESFRSITRSYYRGAAGALLVYDITRRDTFNHLT-TWLEDARQHSNSNMVIMLIGNKSDLESRRE----------VKKEEGEAFAREHGL-IFMETSAKTASNVEEAFINTAKEIYE 169

HSP 2 Score: 23.0978 bits (48), Expect = 5.958e-11
Identity = 8/22 (36.36%), Postives = 14/22 (63.64%), Query Frame = 2 
Query:   38 MSASRFIKCVTVGDGAVGKTCM 103
            M+ +   K + +GD  VGK+C+
Sbjct:    1 MAYAYLFKYIIIGDTGVGKSCL 22
[Close]
BLAST of BQ623186 vs. ExPASy Swiss-Prot
Match: RAB2A_MOUSE (Ras-related protein Rab-2A OS=Mus musculus GN=Rab2a PE=1 SV=1)

HSP 1 Score: 63.1586 bits (152), Expect = 5.958e-11
Identity = 41/159 (25.79%), Postives = 77/159 (48.43%), Query Frame = 3 
Query:  105 VISYTSNTFPTDYVPTVFDNFSANVV-VDGSTVNLGLWDTAGQEDYNRLRPLSYRGADVFLLAFSLISKASYENVAKKWIPELR-HYAPGVPIILVGTKLDLRDDKQFLADHPGAVPITTAQGEELRKLIGAPVYIECSSKTQQNVKAVFDAAIKVVLQ 575
            ++ +T   F   +  T+   F A ++ +DG  + L +WDTAGQE +  +    YRGA   LL + +  + ++ ++   W+ + R H    + I+L+G K DL   ++          +   +GE   +  G  +++E S+KT  NV+  F    K + +
Sbjct:   23 LLQFTDKRFQPVHDLTIGVEFGARMITIDGKQIKLQIWDTAGQESFRSITRSYYRGAAGALLVYDITRRDTFNHLT-TWLEDARQHSNSNMVIMLIGNKSDLESRRE----------VKKEEGEAFAREHGL-IFMETSAKTASNVEEAFINTAKEIYE 169

HSP 2 Score: 23.0978 bits (48), Expect = 5.958e-11
Identity = 8/22 (36.36%), Postives = 14/22 (63.64%), Query Frame = 2 
Query:   38 MSASRFIKCVTVGDGAVGKTCM 103
            M+ +   K + +GD  VGK+C+
Sbjct:    1 MAYAYLFKYIIIGDTGVGKSCL 22
[Close]
BLAST of BQ623186 vs. ExPASy Swiss-Prot
Match: RAB2A_MACFA (Ras-related protein Rab-2A OS=Macaca fascicularis GN=RAB2A PE=2 SV=1)

HSP 1 Score: 63.1586 bits (152), Expect = 5.958e-11
Identity = 41/159 (25.79%), Postives = 77/159 (48.43%), Query Frame = 3 
Query:  105 VISYTSNTFPTDYVPTVFDNFSANVV-VDGSTVNLGLWDTAGQEDYNRLRPLSYRGADVFLLAFSLISKASYENVAKKWIPELR-HYAPGVPIILVGTKLDLRDDKQFLADHPGAVPITTAQGEELRKLIGAPVYIECSSKTQQNVKAVFDAAIKVVLQ 575
            ++ +T   F   +  T+   F A ++ +DG  + L +WDTAGQE +  +    YRGA   LL + +  + ++ ++   W+ + R H    + I+L+G K DL   ++          +   +GE   +  G  +++E S+KT  NV+  F    K + +
Sbjct:   23 LLQFTDKRFQPVHDLTIGVEFGARMITIDGKQIKLQIWDTAGQESFRSITRSYYRGAAGALLVYDITRRDTFNHLT-TWLEDARQHSNSNMVIMLIGNKSDLESRRE----------VKKEEGEAFAREHGL-IFMETSAKTASNVEEAFINTAKEIYE 169

HSP 2 Score: 23.0978 bits (48), Expect = 5.958e-11
Identity = 8/22 (36.36%), Postives = 14/22 (63.64%), Query Frame = 2 
Query:   38 MSASRFIKCVTVGDGAVGKTCM 103
            M+ +   K + +GD  VGK+C+
Sbjct:    1 MAYAYLFKYIIIGDTGVGKSCL 22
[Close]
BLAST of BQ623186 vs. ExPASy Swiss-Prot
Match: RAB2A_HUMAN (Ras-related protein Rab-2A OS=Homo sapiens GN=RAB2A PE=1 SV=1)

HSP 1 Score: 63.1586 bits (152), Expect = 5.958e-11
Identity = 41/159 (25.79%), Postives = 77/159 (48.43%), Query Frame = 3 
Query:  105 VISYTSNTFPTDYVPTVFDNFSANVV-VDGSTVNLGLWDTAGQEDYNRLRPLSYRGADVFLLAFSLISKASYENVAKKWIPELR-HYAPGVPIILVGTKLDLRDDKQFLADHPGAVPITTAQGEELRKLIGAPVYIECSSKTQQNVKAVFDAAIKVVLQ 575
            ++ +T   F   +  T+   F A ++ +DG  + L +WDTAGQE +  +    YRGA   LL + +  + ++ ++   W+ + R H    + I+L+G K DL   ++          +   +GE   +  G  +++E S+KT  NV+  F    K + +
Sbjct:   23 LLQFTDKRFQPVHDLTIGVEFGARMITIDGKQIKLQIWDTAGQESFRSITRSYYRGAAGALLVYDITRRDTFNHLT-TWLEDARQHSNSNMVIMLIGNKSDLESRRE----------VKKEEGEAFAREHGL-IFMETSAKTASNVEEAFINTAKEIYE 169

HSP 2 Score: 23.0978 bits (48), Expect = 5.958e-11
Identity = 8/22 (36.36%), Postives = 14/22 (63.64%), Query Frame = 2 
Query:   38 MSASRFIKCVTVGDGAVGKTCM 103
            M+ +   K + +GD  VGK+C+
Sbjct:    1 MAYAYLFKYIIIGDTGVGKSCL 22
[Close]
BLAST of BQ623186 vs. ExPASy Swiss-Prot
Match: RAB2A_CHICK (Ras-related protein Rab-2A OS=Gallus gallus GN=RAB2A PE=2 SV=1)

HSP 1 Score: 63.1586 bits (152), Expect = 5.958e-11
Identity = 41/159 (25.79%), Postives = 77/159 (48.43%), Query Frame = 3 
Query:  105 VISYTSNTFPTDYVPTVFDNFSANVV-VDGSTVNLGLWDTAGQEDYNRLRPLSYRGADVFLLAFSLISKASYENVAKKWIPELR-HYAPGVPIILVGTKLDLRDDKQFLADHPGAVPITTAQGEELRKLIGAPVYIECSSKTQQNVKAVFDAAIKVVLQ 575
            ++ +T   F   +  T+   F A ++ +DG  + L +WDTAGQE +  +    YRGA   LL + +  + ++ ++   W+ + R H    + I+L+G K DL   ++          +   +GE   +  G  +++E S+KT  NV+  F    K + +
Sbjct:   23 LLQFTDKRFQPVHDLTIGVEFGARMITIDGKQIKLQIWDTAGQESFRSITRSYYRGAAGALLVYDITRRDTFNHLT-TWLEDARQHSNSNMVIMLIGNKSDLESRRE----------VKKEEGEAFAREHGL-IFMETSAKTASNVEEAFINTAKEIYE 169

HSP 2 Score: 23.0978 bits (48), Expect = 5.958e-11
Identity = 8/22 (36.36%), Postives = 14/22 (63.64%), Query Frame = 2 
Query:   38 MSASRFIKCVTVGDGAVGKTCM 103
            M+ +   K + +GD  VGK+C+
Sbjct:    1 MAYAYLFKYIIIGDTGVGKSCL 22
The following BLAST results are available for this feature:
BLAST of BQ623186 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 500
Match NameE-valueIdentityDescription
RAB18_CHICK4.945e-1126.54Ras-related protein Rab-18 OS=Gallus gallus GN=RAB... [more]
RAB18_BOVIN4.945e-1126.54Ras-related protein Rab-18 OS=Bos taurus GN=RAB18 ... [more]
RAA1A_ARATH4.945e-1138.00Ras-related protein RABA1a OS=Arabidopsis thaliana... [more]
RAB2B_HUMAN5.955e-1127.33Ras-related protein Rab-2B OS=Homo sapiens GN=RAB2... [more]
RAB2A_RABIT5.958e-1125.79Ras-related protein Rab-2A OS=Oryctolagus cuniculu... [more]
RAB2A_PONAB5.958e-1125.79Ras-related protein Rab-2A OS=Pongo abelii GN=RAB2... [more]
RAB2A_MOUSE5.958e-1125.79Ras-related protein Rab-2A OS=Mus musculus GN=Rab2... [more]
RAB2A_MACFA5.958e-1125.79Ras-related protein Rab-2A OS=Macaca fascicularis ... [more]
RAB2A_HUMAN5.958e-1125.79Ras-related protein Rab-2A OS=Homo sapiens GN=RAB2... [more]
RAB2A_CHICK5.958e-1125.79Ras-related protein Rab-2A OS=Gallus gallus GN=RAB... [more]

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Properties
Property NameValue
Genbank descriptionUSDA-FP_00277 Ridge pineapple sweet orange entire seedling Citrus sinensis cDNA clone USDA-FP_00277 5, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>BQ623186 ID=BQ623186; Name=BQ623186; organism=Citrus sinensis; type=EST; length=610bp
GTAATAAAGATACTGTCTTAAGTGCACGTGGCGCGAGATGAGTGCATCGA
GGTTCATAAAGTGCGTGACGGTCGGTGACGGCGCCGTCGGCAAGACTTGC
ATGCGTCATTTCTTACACCAGCAACACTTTCCCGACGGATTATGTGCCAA
CAGTATTTGACAATTTCAGTGCAAATGTGGTAGTGGATGGAAGCACTGTT
AATCTTGGGTTGTGGGACACTGCAGGCCAGGAAGATTACAATAGACTAAG
ACCATTGAGCTACCGCGGGGCAGATGTCTTCTTACTCGCATTCTCTCTCA
TTAGCAAGGCCAGCTATGAAAATGTTGCTAAGAAATGGATTCCTGAGTTG
AGGCATTATGCACCTGGTGTTCCAATAATTCTTGTCGGGACGAAGCTCGA
TCTTCGGGATGATAAGCAGTTCCTTGCAGATCACCCTGGTGCAGTGCCAA
TTACCACGGCCCAAGGGGAGGAATTGAGAAAGTTGATAGGTGCTCCTGTT
TACATTGAGTGTAGTTCCAAAACACAACAGAATGTGAAAGCTGTCTTTGA
TGCGGCCATCAAGGTGGTTCTCCAGCCGCCAAAGAACACGAAGAAAAAGA
AGAGAAGGCC
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