BQ623186

Overview
NameBQ623186
Unique NameBQ623186
TypeEST
OrganismCitrus sinensis (Sweet orange)
Sequence length610
Libraries
Library NameType
Ridge pineapple sweet orange entire seedlingcdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Alignments
Feature NameTypeLocationAnalysis
Csv1_Contig12 contig Csv1_Contig12:1..610. BLAST: Citrus Unigene V1 Contigs to Prunus persica proteins V1
Homology
BLAST of BQ623186 vs. ExPASy Swiss-Prot
Match: RAB2A_CANFA (Ras-related protein Rab-2A OS=Canis familiaris GN=RAB2A PE=1 SV=1)

HSP 1 Score: 63.1586 bits (152), Expect = 5.958e-11
Identity = 41/159 (25.79%), Postives = 77/159 (48.43%), Query Frame = 3
Query:  105 VISYTSNTFPTDYVPTVFDNFSANVV-VDGSTVNLGLWDTAGQEDYNRLRPLSYRGADVFLLAFSLISKASYENVAKKWIPELR-HYAPGVPIILVGTKLDLRDDKQFLADHPGAVPITTAQGEELRKLIGAPVYIECSSKTQQNVKAVFDAAIKVVLQ 575
            ++ +T   F   +  T+   F A ++ +DG  + L +WDTAGQE +  +    YRGA   LL + +  + ++ ++   W+ + R H    + I+L+G K DL   ++          +   +GE   +  G  +++E S+KT  NV+  F    K + +
Sbjct:   23 LLQFTDKRFQPVHDLTIGVEFGARMITIDGKQIKLQIWDTAGQESFRSITRSYYRGAAGALLVYDITRRDTFNHLT-TWLEDARQHSNSNMVIMLIGNKSDLESRRE----------VKKEEGEAFAREHGL-IFMETSAKTASNVEEAFINTAKEIYE 169          

HSP 2 Score: 23.0978 bits (48), Expect = 5.958e-11
Identity = 8/22 (36.36%), Postives = 14/22 (63.64%), Query Frame = 2
Query:   38 MSASRFIKCVTVGDGAVGKTCM 103
            M+ +   K + +GD  VGK+C+
Sbjct:    1 MAYAYLFKYIIIGDTGVGKSCL 22          
BLAST of BQ623186 vs. ExPASy Swiss-Prot
Match: RAB1A_DICDI (Ras-related protein Rab-1A OS=Dictyostelium discoideum GN=rab1A PE=2 SV=2)

HSP 1 Score: 63.929 bits (154), Expect = 5.973e-11
Identity = 42/150 (28.00%), Postives = 76/150 (50.67%), Query Frame = 3
Query:  105 VISYTSNTFPTDYVPTVFDNFSANVV-VDGSTVNLGLWDTAGQEDYNRLRPLSYRGADVFLLAFSLISKASYENVAKKWIPELRHYA-PGVPIILVGTKLDLRDDKQFLADHPGAVPITTAQGEELRKLIGAPVYIECSSKTQQNVKAVF 548
            ++ +  +T+   ++ T+  +F    + ++G T+ L +WDTAGQE +  +    YRGA   ++ + +  K ++ENV ++W+ E+  +A   V  +LVG K DL   K         V   TA+       +  P ++E S+K   NV+  F
Sbjct:   25 LLRFADDTYSESFISTIGVDFKIRTIELNGKTIKLQIWDTAGQERFRTITSSYYRGAHGIIVVYDVTDKLTFENV-RQWLQEIDRFACENVNKLLVGNKSDLVAKK--------VVDFNTAKA--FADSLQIP-FLETSAKQSTNVEQAF 162          

HSP 2 Score: 22.3274 bits (46), Expect = 5.973e-11
Identity = 7/15 (46.67%), Postives = 11/15 (73.33%), Query Frame = 2
Query:   59 KCVTVGDGAVGKTCM 103
            K + +GD  VGK+C+
Sbjct:   10 KLLLIGDSGVGKSCL 24          
BLAST of BQ623186 vs. ExPASy Swiss-Prot
Match: RIT1_MOUSE (GTP-binding protein Rit1 OS=Mus musculus GN=Rit1 PE=1 SV=1)

HSP 1 Score: 67.3958 bits (163), Expect = 6.459e-11
Identity = 42/164 (25.61%), Postives = 79/164 (48.17%), Query Frame = 3
Query:   99 ACVISYTSNTFPTDYVPTVFDNFSANVVVDGSTVNLGLWDTAGQEDYNRLRPLSYRGADVFLLAFSLISKASYENVA--KKWIPELRHYAPGVPIILVGTKLDLRDDKQFLADHPGAVPITTAQGEELRKLIGAPVYIECSSKTQQNVKAVFDAAIKVVLQPPK 584
            A  + + S+ FP D+ PT+ D +   + +D    NL + DTAGQ ++  +R    R  + F++ +S+  + S+  V   K+ I  +R      P++LVG K DL+  +Q          ++  +G  L +    P + E S+  +  +  VF A ++ + +  K
Sbjct:   36 AMTMQFISHRFPEDHDPTIEDAYKIRIRIDDEPANLDILDTAGQAEFTAMRDQYMRAGEGFIICYSITDRRSFHEVREFKQLIYRVRR-TDDTPVVLVGNKSDLKQLRQ----------VSKEEGLSLAREFSCP-FFETSAAYRYYIDDVFHALVREIRKKEK 187          
BLAST of BQ623186 vs. ExPASy Swiss-Prot
Match: RAS_EMENI (Ras-like protein OS=Emericella nidulans GN=AN0182 PE=2 SV=2)

HSP 1 Score: 67.3958 bits (163), Expect = 6.459e-11
Identity = 48/148 (32.43%), Postives = 76/148 (51.35%), Query Frame = 3
Query:  108 ISYTSNTFPTDYVPTVFDNFSANVVVDGSTVNLGLWDTAGQEDYNRLRPLSYRGADVFLLAFSLISKASYENVAKKWIPELR-HYAPGVPIILVGTKLDLRDDKQFLADHPGAVPITTAQGEELRKLIGAPVYIECSSKTQQNVKAVF 548
            I    + F  +Y PT+ D++    V+D     L + DTAGQE+Y+ +R    R  + FLL +S+ S+ S+E +       LR       PII+VG K DL  DK+ +        ++  +GE L +  G   +IE S+K++ NV+  F
Sbjct:   26 IQLIQSHFVDEYDPTIEDSYRKQCVIDDEVALLDVLDTAGQEEYSAMREQYMRTGEGFLLVYSITSRQSFEEIMTFQQQILRVKDKDYFPIIVVGNKCDL--DKERV--------VSEQEGESLARQFGCK-FIETSAKSRINVENAF 162          
BLAST of BQ623186 vs. ExPASy Swiss-Prot
Match: RASV_DICDI (Ras-like protein rasV OS=Dictyostelium discoideum GN=rasV PE=3 SV=1)

HSP 1 Score: 67.3958 bits (163), Expect = 6.459e-11
Identity = 44/157 (28.03%), Postives = 79/157 (50.32%), Query Frame = 3
Query:   93 RLACVISYTSNTFPTDYVPTVFDNFSANVVVDGSTVNLGLWDTAGQEDYNRLRPLSYRGADVFLLAFSLISKASYENVAKKWIPELRHY-APGVPIILVGTKLDLRDDKQFLADHPGAVPITTAQGEELRKLIGAPVYIECSSKTQQNVKAVFDAAI 560
            + A    + SN F   Y PT+ D++   + V   +  L + DTAGQ++   +R    R  + F+L +S+  K+S+  V       +R      VPI+++G K DL +++Q          +T  +G+EL + +G   ++E S+K + N+  VF  A+
Sbjct:   46 KTAVTTQFISNHFVYYYDPTIEDSYRKQICVSDKSYILDILDTAGQDELTAMRDQWIRSCEGFVLVYSITCKSSFNQVLNFREQIIRVLDRDDVPIMMIGNKSDLVNERQ----------VTYHEGKELAQRLGMS-FMEVSAKNRSNIDEVFHEAV 191          
BLAST of BQ623186 vs. ExPASy Swiss-Prot
Match: RAPB_DICDI (Ras-related protein rapB OS=Dictyostelium discoideum GN=rapB PE=3 SV=1)

HSP 1 Score: 67.3958 bits (163), Expect = 6.459e-11
Identity = 50/176 (28.41%), Postives = 87/176 (49.43%), Query Frame = 3
Query:   99 ACVISYTSNTFPTDYVPTVFDNFSANVVVDGSTVNLGLWDTAGQEDYNRLRPLSYRGADVFLLAFSLISKASYENVAKKWIPELRHY--APGVPIILVGTKLDLRDDKQFLADHPGAVPITTAQGEELRKLIGAPVYIECSSKTQQNVKAVFDAAIKVVLQPPKN----TKKKKRR 608
            A  + +T   F   Y PTV D ++    +DG  V + + DTAG E    +R L  + A+ F+L +S++ K+++  + K  + +L        VPI+LVG K+DL   ++          ++T +G++L        + E SSK + NV  VF + +K + +  K      K+KK +
Sbjct:   37 ALTVQFTQGVFIDKYDPTVEDTYTKTFELDGEQVCIEVLDTAGSEVLVAMRELYMKNAEGFILVYSILVKSTFLEI-KDIVEQLFRVKEEEEVPIVLVGNKIDLDAHRE----------VSTNEGKQLANSYPNCDFWEASSKDRINVDNVFFSIVKRIKEKYKKEGAPVKEKKEK 201          
BLAST of BQ623186 vs. ExPASy Swiss-Prot
Match: RAP1B_XENTR (Ras-related protein Rap-1b OS=Xenopus tropicalis GN=rap1b PE=2 SV=1)

HSP 1 Score: 67.3958 bits (163), Expect = 6.459e-11
Identity = 46/171 (26.90%), Postives = 81/171 (47.37%), Query Frame = 3
Query:   99 ACVISYTSNTFPTDYVPTVFDNFSANVVVDGSTVNLGLWDTAGQEDYNRLRPLSYRGADVFLLAFSLISKASYENVAKKWIPELR-HYAPGVPIILVGTKLDLRDDKQFLADHPGAVPITTAQGEELRKLIGAPVYIECSSKTQQNVKAVF-DAAIKVVLQPPKNTKKKKR 605
            A  + +    F   Y PT+ D++   V VDG    L + DTAG E +  +R L  +    F L +S+ +++++ ++       LR      VP+ILVG K DL D++           +   QG+ L +      ++E S+K++ NV  +F D   ++  + P   K +K+
Sbjct:   18 ALTVQFVQGIFVEKYDPTIEDSYRKQVEVDGQQCMLEILDTAGTEQFTAMRDLYMKNGQGFALVYSITAQSTFNDLQDLREQILRVKDTDDVPMILVGNKCDLEDER----------VVGKEQGQNLARQWNNCAFLESSAKSKINVNEIFYDLVRQINRKTPVPGKARKK 178          
BLAST of BQ623186 vs. ExPASy Swiss-Prot
Match: RAP1B_XENLA (Ras-related protein Rap-1b OS=Xenopus laevis GN=rap1b PE=2 SV=1)

HSP 1 Score: 67.3958 bits (163), Expect = 6.459e-11
Identity = 46/171 (26.90%), Postives = 81/171 (47.37%), Query Frame = 3
Query:   99 ACVISYTSNTFPTDYVPTVFDNFSANVVVDGSTVNLGLWDTAGQEDYNRLRPLSYRGADVFLLAFSLISKASYENVAKKWIPELR-HYAPGVPIILVGTKLDLRDDKQFLADHPGAVPITTAQGEELRKLIGAPVYIECSSKTQQNVKAVF-DAAIKVVLQPPKNTKKKKR 605
            A  + +    F   Y PT+ D++   V VDG    L + DTAG E +  +R L  +    F L +S+ +++++ ++       LR      VP+ILVG K DL D++           +   QG+ L +      ++E S+K++ NV  +F D   ++  + P   K +K+
Sbjct:   18 ALTVQFVQGIFVEKYDPTIEDSYRKQVEVDGQQCMLEILDTAGTEQFTAMRDLYMKNGQGFALVYSITAQSTFNDLQDLREQILRVKDTDDVPMILVGNKCDLEDER----------VVGKEQGQNLARQWNNCAFLESSAKSKINVNEIFYDLVRQINRKTPVPGKARKK 178          
BLAST of BQ623186 vs. ExPASy Swiss-Prot
Match: RABA_DICDI (Ras-related protein RabA OS=Dictyostelium discoideum GN=rabA PE=2 SV=2)

HSP 1 Score: 67.3958 bits (163), Expect = 6.459e-11
Identity = 35/106 (33.02%), Postives = 58/106 (54.72%), Query Frame = 3
Query:  105 VISYTSNTFPTDYVPTVFDNFSANVV-VDGSTVNLGLWDTAGQEDYNRLRPLSYRGADVFLLAFSLISKASYENVAKKWIPELRHYA-PGVPIILVGTKLDLRDDK 416
            ++ +T +TF   Y+ T+  +F    V ++G  + L +WDTAGQE +       YRG    ++ + +  + S+ENVA KWI E+  YA   V  +++G K D+   K
Sbjct:   25 LLRFTEDTFTESYISTIGVDFKIKTVYIEGKAIKLQIWDTAGQERFRVHNNSQYRGCHAVMVVYDVTDQRSFENVA-KWIQEIERYARDNVIKMIIGNKSDMISQK 129          
BLAST of BQ623186 vs. ExPASy Swiss-Prot
Match: RAB4B_RAT (Ras-related protein Rab-4B OS=Rattus norvegicus GN=Rab4b PE=2 SV=1)

HSP 1 Score: 67.3958 bits (163), Expect = 6.459e-11
Identity = 50/161 (31.06%), Postives = 80/161 (49.69%), Query Frame = 3
Query:   99 ACVI-SYTSNTFPTDYVPTVFDNFSANVV-VDGSTVNLGLWDTAGQEDYNRLRPLSYRGADVFLLAFSLISKASYENVAKKWIPELRHYA-PGVPIILVGTKLDLRDDKQFLADHPGAVPITTAQGEELRKLIGAPVYIECSSKTQQNVKAVFDAAIKVVL 572
            +C++  +  N F  D   T+   F + VV V G TV L +WDTAGQE +  +    YRGA   LL + + S+ +Y ++A  W+ + R  A P + +IL G K DL  +++             AQ  EL       +++E S+ T +NV+  F    + +L
Sbjct:   22 SCLLHQFIENKFKQDSNHTIGVEFGSRVVNVGGKTVKLQIWDTAGQERFRSVTRSYYRGAAGALLVYDITSRETYNSLA-AWLTDARTLASPNIVVILCGNKKDLDPEREVTFLEASRF----AQENEL-------MFLETSALTGENVEEAFLKCARTIL 170          
The following BLAST results are available for this feature:
BLAST of BQ623186 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 500
Match NameE-valueIdentityDescription
RAB2A_CANFA5.958e-1125.79Ras-related protein Rab-2A OS=Canis familiaris GN=... [more]
RAB1A_DICDI5.973e-1128.00Ras-related protein Rab-1A OS=Dictyostelium discoi... [more]
RIT1_MOUSE6.459e-1125.61GTP-binding protein Rit1 OS=Mus musculus GN=Rit1 P... [more]
RAS_EMENI6.459e-1132.43Ras-like protein OS=Emericella nidulans GN=AN0182 ... [more]
RASV_DICDI6.459e-1128.03Ras-like protein rasV OS=Dictyostelium discoideum ... [more]
RAPB_DICDI6.459e-1128.41Ras-related protein rapB OS=Dictyostelium discoide... [more]
RAP1B_XENTR6.459e-1126.90Ras-related protein Rap-1b OS=Xenopus tropicalis G... [more]
RAP1B_XENLA6.459e-1126.90Ras-related protein Rap-1b OS=Xenopus laevis GN=ra... [more]
RABA_DICDI6.459e-1133.02Ras-related protein RabA OS=Dictyostelium discoide... [more]
RAB4B_RAT6.459e-1131.06Ras-related protein Rab-4B OS=Rattus norvegicus GN... [more]

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Properties
Property NameValue
Genbank descriptionUSDA-FP_00277 Ridge pineapple sweet orange entire seedling Citrus sinensis cDNA clone USDA-FP_00277 5, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>BQ623186 ID=BQ623186; Name=BQ623186; organism=Citrus sinensis; type=EST; length=610bp
GTAATAAAGATACTGTCTTAAGTGCACGTGGCGCGAGATGAGTGCATCGA
GGTTCATAAAGTGCGTGACGGTCGGTGACGGCGCCGTCGGCAAGACTTGC
ATGCGTCATTTCTTACACCAGCAACACTTTCCCGACGGATTATGTGCCAA
CAGTATTTGACAATTTCAGTGCAAATGTGGTAGTGGATGGAAGCACTGTT
AATCTTGGGTTGTGGGACACTGCAGGCCAGGAAGATTACAATAGACTAAG
ACCATTGAGCTACCGCGGGGCAGATGTCTTCTTACTCGCATTCTCTCTCA
TTAGCAAGGCCAGCTATGAAAATGTTGCTAAGAAATGGATTCCTGAGTTG
AGGCATTATGCACCTGGTGTTCCAATAATTCTTGTCGGGACGAAGCTCGA
TCTTCGGGATGATAAGCAGTTCCTTGCAGATCACCCTGGTGCAGTGCCAA
TTACCACGGCCCAAGGGGAGGAATTGAGAAAGTTGATAGGTGCTCCTGTT
TACATTGAGTGTAGTTCCAAAACACAACAGAATGTGAAAGCTGTCTTTGA
TGCGGCCATCAAGGTGGTTCTCCAGCCGCCAAAGAACACGAAGAAAAAGA
AGAGAAGGCC
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