BQ623188 | Citrus Genome Database

Overview


Name	BQ623188
Unique Name	BQ623188
Type	EST
Organism	Citrus sinensis (Sweet orange)
Sequence length	576

Libraries


Library Name	Type
Ridge pineapple sweet orange entire seedling	cdna_library

Analyses

This EST is derived from or has results from the following analyses


Analysis Name	Date Performed
BLAST: Citrus ESTs to Prunus persica proteins V1	2010-05-10
BLAST: Citrus ESTs to Populus V2 proteins	2010-05-10
BLAST: Citrus ESTs to TAIR9	2010-05-10
BLAST: Citrus ESTs to SwissProt	2010-05-10

Alignments

Feature Name	Type	Location	Analysis
Csv1_Contig1260	contig	Csv1_Contig1260:580..1152.	BLAST: Citrus Unigene V1 Contigs to Prunus persica proteins V1

Homology

[Close]

BLAST of BQ623188 vs. ExPASy Swiss-Prot
Match: CB23_HORVU (Chlorophyll a-b binding protein of LHCII type III, chloroplastic OS=Hordeum vulgare GN=LHBC PE=2 SV=1)

HSP 1 Score: 202.986 bits (515), Expect = 1.799e-63
Identity = 103/144 (71.53%), Postives = 111/144 (77.08%), Query Frame = 3

Query:   99 LTGEFPGDYGWDTAGLSADPETFAKNRELEVIHSRWAMLGALGCVFPEILSK-NGVKFGEAVWFKAGAQIFSEGGLDYLGNPNLIHAQSILAIWACQVVLMGFVEGYRIXXXXXXXXXXXXXXXXA-FDPLGLADDPDQFAELK 524
            L GEFPGDYGWDTAGLSADPE FA+NR LEVIH RWAMLGALGCVFPE+L K  GV+F E VWFKAG+QIFSEGGLDYLGNPNL+HAQSILA+   QV+LMG VEG+RI                  FDPLGLADDP  FAELK
Sbjct:   70 LNGEFPGDYGWDTAGLSADPEAFARNRALEVIHGRWAMLGALGCVFPEVLQKWVGVEFKEPVWFKAGSQIFSEGGLDYLGNPNLVHAQSILAVLGFQVLLMGLVEGFRINGLDGVGEGNDLYPGGQYFDPLGLADDPVTFAELK 213

HSP 2 Score: 47.3654 bits (111), Expect = 1.799e-63
Identity = 18/23 (78.26%), Postives = 21/23 (91.30%), Query Frame = 2

Query:   35 IWYGPDRPKYLGPFSEQTPSYID 103
            +WYGPDR KYLGPFS QTPSY++
Sbjct:   49 LWYGPDRVKYLGPFSAQTPSYLN 71

HSP 3 Score: 33.8834 bits (76), Expect = 1.799e-63
Identity = 15/23 (65.22%), Postives = 17/23 (73.91%), Query Frame = 1

Query:  502 PINLLS*KVKELKNGRLAMFYMF 570
            P+     KVKE+KNGRLAMF MF
Sbjct:  206 PVTFAELKVKEIKNGRLAMFSMF 228

[Close]

BLAST of BQ623188 vs. ExPASy Swiss-Prot
Match: CB23_SOLLC (Chlorophyll a-b binding protein 13, chloroplastic OS=Solanum lycopersicum GN=CAB13 PE=1 SV=1)

HSP 1 Score: 200.675 bits (509), Expect = 2.518e-62
Identity = 102/144 (70.83%), Postives = 109/144 (75.69%), Query Frame = 3

Query:   99 LTGEFPGDYGWDTAGLSADPETFAKNRELEVIHSRWAMLGALGCVFPEILSK-NGVKFGEAVWFKAGAQIFSEGGLDYLGNPNLIHAQSILAIWACQVVLMGFVEGYRIXXXXXXXXXXXXXXXXA-FDPLGLADDPDQFAELK 524
            L GEFPGDYGWDTAGLSADPE FAKNR LEVIH RWAMLGALGC+FPE+L K   V F E VWFKAG+QIFS+GGLDYLGNPNL+HAQSILA+   QVVLMG VEG+RI                  FDPLGLADDP  FAELK
Sbjct:   67 LNGEFPGDYGWDTAGLSADPEAFAKNRALEVIHGRWAMLGALGCIFPEVLEKWVKVDFKEPVWFKAGSQIFSDGGLDYLGNPNLVHAQSILAVLGFQVVLMGLVEGFRINGLPGVGEGNDLYPGGQYFDPLGLADDPTTFAELK 210

HSP 2 Score: 47.3654 bits (111), Expect = 2.518e-62
Identity = 18/23 (78.26%), Postives = 21/23 (91.30%), Query Frame = 2

Query:   35 IWYGPDRPKYLGPFSEQTPSYID 103
            +WYGPDR KYLGPFS QTPSY++
Sbjct:   46 LWYGPDRVKYLGPFSAQTPSYLN 68

HSP 3 Score: 32.3426 bits (72), Expect = 2.518e-62
Identity = 15/23 (65.22%), Postives = 16/23 (69.57%), Query Frame = 1

Query:  502 PINLLS*KVKELKNGRLAMFYMF 570
            P      KVKE+KNGRLAMF MF
Sbjct:  203 PTTFAELKVKEIKNGRLAMFSMF 225

[Close]

BLAST of BQ623188 vs. ExPASy Swiss-Prot
Match: CB2_CHLRE (Chlorophyll a-b binding protein of LHCII type I, chloroplastic OS=Chlamydomonas reinhardtii GN=cabII-1 PE=3 SV=1)

HSP 1 Score: 216.468 bits (550), Expect = 7.241e-62
Identity = 102/142 (71.83%), Postives = 116/142 (81.69%), Query Frame = 3

Query:   99 LTGEFPGDYGWDTAGLSADPETFAKNRELEVIHSRWAMLGALGCVFPEILSKNGVKFGEAVWFKAGAQIFSEGGLDYLGNPNLIHAQSILAIWACQVVLMGFVEGYRIXXXXXXXXXXXXXXXXAFDPLGLADDPDQFAELK 524
            LTGEFPGDYGWDTAGLSADPETF + RELE+IH+RWAMLGALGC  PE+L+K+G KFGEAVWFKAGAQIFSEGGLDYLGNP+L+HAQ+I+A  A QV+LMG +EGYR+                +FDPLGLADDPD FAELK
Sbjct:   57 LTGEFPGDYGWDTAGLSADPETFKRYRELELIHARWAMLGALGCQTPELLAKSGTKFGEAVWFKAGAQIFSEGGLDYLGNPSLVHAQNIVATSAVQVILMGLIEGYRVNGGPAGEGLDPLYPGESFDPLGLADDPDTFAELK 198

HSP 2 Score: 32.7278 bits (73), Expect = 7.241e-62
Identity = 16/31 (51.61%), Postives = 24/31 (77.42%), Query Frame = 2

Query:   20 SAPQSI---WYGPDRPKYLGPFSEQ-TPSYI 100
            +AP+S    +YGP+R K+LGP+SE  TP+Y+
Sbjct:   27 AAPKSSGVEFYGPNRAKWLGPYSENATPAYL 57

HSP 3 Score: 29.6462 bits (65), Expect = 7.241e-62
Identity = 13/16 (81.25%), Postives = 14/16 (87.50%), Query Frame = 1

Query:  523 KVKELKNGRLAMFYMF 570
            KVKE+KNGRLA F MF
Sbjct:  198 KVKEIKNGRLASFSMF 213

[Close]

BLAST of BQ623188 vs. ExPASy Swiss-Prot
Match: CB2_CHLMO (Chlorophyll a-b binding protein of LHCII type I, chloroplastic OS=Chlamydomonas moewusii PE=2 SV=1)

HSP 1 Score: 205.682 bits (522), Expect = 2.708e-61
Identity = 103/143 (72.03%), Postives = 113/143 (79.02%), Query Frame = 3

Query:   99 LTGEFPGDYGWDTAGLSADPETFAKNRELEVIHSRWAMLGALGCVFPEILSK-NGVKFGEAVWFKAGAQIFSEGGLDYLGNPNLIHAQSILAIWACQVVLMGFVEGYRIXXXXXXXXXXXXXXXXAFDPLGLADDPDQFAELK 524
            LTGEFPGDYGWDTAGLSADPETF K RELEVIH+RWA+LGALG + PE+LS   GVKFGE VWFKAGAQIFSEGGLDYLG+P LIHAQ+I+A  A QVVLMG +EGYR+                +FDPLGLADDPD FAELK
Sbjct:   59 LTGEFPGDYGWDTAGLSADPETFKKYRELEVIHARWALLGALGILTPELLSTYAGVKFGEPVWFKAGAQIFSEGGLDYLGSPALIHAQNIVATLAVQVVLMGLIEGYRVNGGPAGEGLDPLYPGESFDPLGLADDPDTFAELK 201

HSP 2 Score: 41.5874 bits (96), Expect = 2.708e-61
Identity = 15/21 (71.43%), Postives = 18/21 (85.71%), Query Frame = 2

Query:   38 WYGPDRPKYLGPFSEQTPSYI 100
            WYGPDR K+LGPFS  TP+Y+
Sbjct:   39 WYGPDRAKWLGPFSTNTPAYL 59

HSP 3 Score: 29.6462 bits (65), Expect = 2.708e-61
Identity = 13/16 (81.25%), Postives = 14/16 (87.50%), Query Frame = 1

Query:  523 KVKELKNGRLAMFYMF 570
            KVKE+KNGRLAMF  F
Sbjct:  201 KVKEIKNGRLAMFSCF 216

[Close]

BLAST of BQ623188 vs. ExPASy Swiss-Prot
Match: CB2_MALDO (Chlorophyll a-b binding protein AB10, chloroplastic OS=Malus domestica PE=3 SV=1)

HSP 1 Score: 203.756 bits (517), Expect = 1.628e-57
Identity = 103/142 (72.54%), Postives = 112/142 (78.87%), Query Frame = 3

Query:   99 LTGEFPGDYGWDTAGLSADPETFAKNRELEVIHSRWAMLGALGCVFPEILSKNGVKFGEAVWFKAGAQIFSEGGLDYLGNPNLIHAQSILAIWACQVVLMGFVEGYRIXXXXXXXXXXXXXXXXAFDPLGLADDPDQFAELK 524
            LTGEFPGDYGWDTAGLSA PETFAKNRELEVIHSR AM  ALGC+FPE+LS  G  FGEAVWFKAGAQIFSEGGLDYLGNP+L+HAQSILAIW  +V+LMG VEGYRI                +FD LGLA+D + FAELK
Sbjct:   73 LTGEFPGDYGWDTAGLSAYPETFAKNRELEVIHSRCAMSAALGCIFPELLSVMGQGFGEAVWFKAGAQIFSEGGLDYLGNPSLVHAQSILAIWTTKVILMGAVEGYRI-ARGPLGEVTDPLYPGSFDSLGLAEDTEAFAELK 213

HSP 2 Score: 32.7278 bits (73), Expect = 1.628e-57
Identity = 15/16 (93.75%), Postives = 15/16 (93.75%), Query Frame = 1

Query:  523 KVKELKNGRLAMFYMF 570
            KVKELKNGRLAMF MF
Sbjct:  213 KVKELKNGRLAMFSMF 228

HSP 3 Score: 27.7202 bits (60), Expect = 1.628e-57
Identity = 11/16 (68.75%), Postives = 13/16 (81.25%), Query Frame = 2

Query:   53 RPKYLGPFSEQTPSYI 100
            R KYLGPFS + PSY+
Sbjct:   58 RVKYLGPFSGEWPSYL 73

[Close]

BLAST of BQ623188 vs. ExPASy Swiss-Prot
Match: CB22_SOYBN (Chlorophyll a-b binding protein 2, chloroplastic OS=Glycine max GN=CAB2 PE=3 SV=1)

HSP 1 Score: 208.379 bits (529), Expect = 5.429e-57
Identity = 104/147 (70.75%), Postives = 115/147 (78.23%), Query Frame = 3

Query:   84 KHHHTLTGEFPGDYGWDTAGLSADPETFAKNRELEVIHSRWAMLGALGCVFPEILSKNGVKFGEAVWFKAGAQIFSEGGLDYLGNPNLIHAQSILAIWACQVVLMGFVEGYRIXXXXXXXXXXXXXXXXAFDPLGLADDPDQFAELK 524
            K+    +GE P     +  GLSADPETFAKNRELEVIHSRWAMLGALGCVFPE+L++NGVKFGEAVWFKAG+QIFSEGGLDYLGNP+LIHAQSILAIWA QV+LMG VEGYRI                +FDPLGLADDP+  AELK
Sbjct:   55 KYLGPFSGEAPSYLTGEFHGLSADPETFAKNRELEVIHSRWAMLGALGCVFPELLARNGVKFGEAVWFKAGSQIFSEGGLDYLGNPSLIHAQSILAIWATQVILMGAVEGYRIAGGPLGEVTDPIYPGGSFDPLGLADDPEALAELK 201

HSP 2 Score: 33.113 bits (74), Expect = 5.429e-57
Identity = 17/23 (73.91%), Postives = 17/23 (73.91%), Query Frame = 1

Query:  502 PINLLS*KVKELKNGRLAMFYMF 570
            P  L   KVKELKNGRLAMF MF
Sbjct:  194 PEALAELKVKELKNGRLAMFSMF 216

[Close]

BLAST of BQ623188 vs. ExPASy Swiss-Prot
Match: CB2_DUNTE (Chlorophyll a-b binding protein of LHCII type I, chloroplastic OS=Dunaliella tertiolecta PE=2 SV=1)

HSP 1 Score: 189.504 bits (480), Expect = 2.611e-54
Identity = 96/145 (66.21%), Postives = 111/145 (76.55%), Query Frame = 3

Query:   99 LTGEFPGDYGWDTAGLSADPETFAKNRELEVIHSRWAMLGALGCVFPEILSK-NGVKFGEAVWFKAGAQIFSEGGLDYLGNPNLIHAQSILAIWACQVVLMGFVEGYRIXXXXXXXXXXXXXXXXA--FDPLGLADDPDQFAELK 524
            LTGEFPGDYGWDTAGLSADP+TFA+ RE+E+IH+RWA+LGALG + PE+LS+  GV+FGE VWFKAGAQIF++GGL+YLGN +LIHAQSI+A  A QVVLMG  E YR                    FDPLGLADDPD FAELK
Sbjct:   54 LTGEFPGDYGWDTAGLSADPQTFARYREIELIHARWALLGALGILTPELLSQYAGVQFGEPVWFKAGAQIFADGGLNYLGNESLIHAQSIIATLAVQVVLMGLAEAYRANGGSEGFLDDLDTLYPGGPFDPLGLADDPDTFAELK 198

HSP 2 Score: 35.4242 bits (80), Expect = 2.611e-54
Identity = 15/22 (68.18%), Postives = 18/22 (81.82%), Query Frame = 2

Query:   38 WYGPDRPKYLGPFSE-QTPSYI 100
            +YGPDR K+LGPFSE  TP Y+
Sbjct:   33 FYGPDRAKFLGPFSENDTPEYL 54

HSP 3 Score: 28.4906 bits (62), Expect = 2.611e-54
Identity = 12/13 (92.31%), Postives = 13/13 (100.00%), Query Frame = 1

Query:  523 KVKELKNGRLAMF 561
            KVKE+KNGRLAMF
Sbjct:  198 KVKEIKNGRLAMF 210

[Close]

BLAST of BQ623188 vs. ExPASy Swiss-Prot
Match: CB2_DUNSA (Chlorophyll a-b binding protein of LHCII type I, chloroplastic OS=Dunaliella salina PE=2 SV=1)

HSP 1 Score: 193.741 bits (491), Expect = 3.105e-51
Identity = 100/159 (62.89%), Postives = 118/159 (74.21%), Query Frame = 3

Query:   54 AQSTWDHSLSKHHHTLTGEFPGDYGWDTAGLSADPETFAKNRELEVIHSRWAMLGALGCVFPEILS-KNGVKFGE-AVWFKAGAQIFSEGGLDYLGNPNLIHAQSILAIWACQVVLMGFVEGYRIXXXXXXXXXXXXXXXXAFDPLGLADDPDQFAELK 524
            A S WD    +H    TGEFPGDYGWDTAGLSADPETF + RELE+IH+R  +LGALG V PE+L+ ++G+KFG+ A+WFKAGA IF +GGL+YLGNP+LIHAQ+I+A  A QVVLMG VEGYR+                AFDPLGLADDPD FAELK
Sbjct:   62 ATSGWDLQ-HQHPRLPTGEFPGDYGWDTAGLSADPETFKRYRELELIHARCGLLGALGMVTPELLADEDGIKFGDAAIWFKAGAAIFQDGGLNYLGNPSLIHAQNIVATLAVQVVLMGLVEGYRVNGGPAGEGLDPLYPGEAFDPLGLADDPDTFAELK 219

HSP 2 Score: 28.4906 bits (62), Expect = 3.105e-51
Identity = 12/13 (92.31%), Postives = 13/13 (100.00%), Query Frame = 1

Query:  523 KVKELKNGRLAMF 561
            KVKE+KNGRLAMF
Sbjct:  219 KVKEIKNGRLAMF 231

[Close]

BLAST of BQ623188 vs. ExPASy Swiss-Prot
Match: CB22_PINSY (Chlorophyll a-b binding protein type 2 member 2 (Fragment) OS=Pinus sylvestris PE=2 SV=1)

HSP 1 Score: 144.821 bits (364), Expect = 1.168e-37
Identity = 71/95 (74.74%), Postives = 75/95 (78.95%), Query Frame = 3

Query:  240 EILSKNGVKFGEAVWFKAGAQIFSEGGLDYLGNPNLIHAQSILAIWACQVVLMGFVEGYRIXXXXXXXXXXXXXXXXAFDPLGLADDPDQFAELK 524
            E+L KNGVKFGEAVWFKAGAQIFSEGGLDYLGNPNLIHAQSILAIWACQVVLMG +EGYR+                AFDPLGLADDP+  AELK
Sbjct:    1 ELLVKNGVKFGEAVWFKAGAQIFSEGGLDYLGNPNLIHAQSILAIWACQVVLMGLIEGYRVGGGPLGEGLDPLYPGDAFDPLGLADDPEAKAELK 95

HSP 2 Score: 31.9574 bits (71), Expect = 1.168e-37
Identity = 14/16 (87.50%), Postives = 15/16 (93.75%), Query Frame = 1

Query:  523 KVKELKNGRLAMFYMF 570
            KVKE+KNGRLAMF MF
Sbjct:   95 KVKEIKNGRLAMFSMF 110

[Close]

BLAST of BQ623188 vs. ExPASy Swiss-Prot
Match: CB26_ARATH (Chlorophyll a-b binding protein CP26, chloroplastic OS=Arabidopsis thaliana GN=LHCB5 PE=2 SV=1)

HSP 1 Score: 110.538 bits (275), Expect = 3.434e-27
Identity = 68/143 (47.55%), Postives = 81/143 (56.64%), Query Frame = 3

Query:   99 LTGEFPGDYGWDTAGLSADPETFAKNRELEVIHSRWAMLGALGCVFPEILSKNGVKFG-EAVWFKAGAQIFSEGGLDYLGNPNLIHAQSILAIWACQVVLMGFVEGYRIXXXXXXXXXXXXXXXXAFDPLGLADDPDQFAELK 524
            L GE  GDYG+D  GL   PE FAK +  E+IH+RWAMLGA G + PE L+K G   G EAVWFK GA +     L+Y G    I    +LA+ A +VVL+G  E YRI                 FDPLGLA DP+Q A LK
Sbjct:   85 LNGEVAGDYGYDPFGLGKKPENFAKYQAFELIHARWAMLGAAGFIIPEALNKYGANCGPEAVWFKTGALLLDGNTLNYFGKN--IPINLVLAVVA-EVVLLGGAEYYRI--TNGLDFEDKLHPGGPFDPLGLAKDPEQGALLK 222

HSP 2 Score: 29.6462 bits (65), Expect = 3.434e-27
Identity = 13/15 (86.67%), Postives = 14/15 (93.33%), Query Frame = 1

Query:  523 KVKELKNGRLAMFYM 567
            KVKE+KNGRLAMF M
Sbjct:  222 KVKEIKNGRLAMFAM 236

HSP 3 Score: 21.557 bits (44), Expect = 3.434e-27
Identity = 7/10 (70.00%), Postives = 8/10 (80.00%), Query Frame = 2

Query:   38 WYGPDRPKYL 67
            WYGPDR  +L
Sbjct:   62 WYGPDRRIFL 71

The following BLAST results are available for this feature:

BLAST of BQ623188 vs. ExPASy Swiss-Prot

BLAST of BQ623188 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 71


Match Name	E-value	Identity	Description
CB23_HORVU	1.799e-63	71.53	Chlorophyll a-b binding protein of LHCII type III,...	[more]
CB23_SOLLC	2.518e-62	70.83	Chlorophyll a-b binding protein 13, chloroplastic ...	[more]
CB2_CHLRE	7.241e-62	71.83	Chlorophyll a-b binding protein of LHCII type I, c...	[more]
CB2_CHLMO	2.708e-61	72.03	Chlorophyll a-b binding protein of LHCII type I, c...	[more]
CB2_MALDO	1.628e-57	72.54	Chlorophyll a-b binding protein AB10, chloroplasti...	[more]
CB22_SOYBN	5.429e-57	70.75	Chlorophyll a-b binding protein 2, chloroplastic O...	[more]
CB2_DUNTE	2.611e-54	66.21	Chlorophyll a-b binding protein of LHCII type I, c...	[more]
CB2_DUNSA	3.105e-51	62.89	Chlorophyll a-b binding protein of LHCII type I, c...	[more]
CB22_PINSY	1.168e-37	74.74	Chlorophyll a-b binding protein type 2 member 2 (F...	[more]
CB26_ARATH	3.434e-27	47.55	Chlorophyll a-b binding protein CP26, chloroplasti...	[more]

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Properties


Property Name	Value
Genbank description	USDA-FP_00279 Ridge pineapple sweet orange entire seedling Citrus sinensis cDNA clone USDA-FP_00279 5, mRNA sequence.

Sequences

The following sequences are available for this feature:

EST sequence

EST sequence

>BQ623188 ID=BQ623188; Name=BQ623188; organism=Citrus sinensis; type=EST; length=576bp
CATGAGGAGGACTGTCAAATCCGCTCCCCAGAGCATCTGGTACGGCCCAG
ACCGCCCAAAGTACTTGGGACCATTCTCTGAGCAAACACCATCATACATT
GACTGGTGAGTTCCCTGGTGACTATGGCTGGGATACCGCTGGTTTATCAG
CAGACCCCGAGACATTTGCTAAGAACCGTGAGCTAGAGGTGATCCACAGC
AGATGGGCAATGCTTGGAGCTCTTGGCTGCGTCTTCCCTGAAATCCTCTC
CAAGAATGGAGTGAAGTTCGGCGAAGCAGTTTGGTTCAAGGCTGGCGCTC
AAATATTCTCTGAAGGTGGCCTTGACTATCTTGGCAACCCCAACCTCATT
CATGCTCAGAGCATTTTGGCTATCTGGGCCTGCCAGGTTGTGCTTATGGG
TTTTGTTGAAGGATACAGAATTGGTGGCGGTCCTCTTGGTGAAGGACTTG
ACCCACTTTACCCTGGTGGTGCTTTTGACCCACTTGGTTTGGCTGATGAC
CCCGATCAATTTGCTGAGTTGAAAGGTCAAGGAGCTCAAGAATGGCCGTC
TGGCTATGTTCTACATGTTTTGGATT