BQ623188

Overview
NameBQ623188
Unique NameBQ623188
TypeEST
OrganismCitrus sinensis (Sweet orange)
Sequence length576
Libraries
Library NameType
Ridge pineapple sweet orange entire seedlingcdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Alignments
Feature NameTypeLocationAnalysis
Csv1_Contig1260 contig Csv1_Contig1260:580..1152. BLAST: Citrus Unigene V1 Contigs to Prunus persica proteins V1
Homology
[Close]
BLAST of BQ623188 vs. ExPASy Swiss-Prot
Match: CB2F_SOLLC (Chlorophyll a-b binding protein 3B, chloroplastic (Fragments) OS=Solanum lycopersicum GN=CAB3B PE=3 SV=1)

HSP 1 Score: 77.0258 bits (188), Expect = 1.646e-17
Identity = 38/61 (62.30%), Postives = 43/61 (70.49%), Query Frame = 3 
Query:  342 NLIHAQSILAIWACQVVLMGFVEGYRIXXXXXXXXXXXXXXXXAFDPLGLADDPDQFAELK 524
            +L+HAQSILAIWACQVVLMG VEGYRI                +FDPLGLA+DP+ FAELK
Sbjct:  152 SLVHAQSILAIWACQVVLMGAVEGYRIAGGPLGEVVDPLYPGGSFDPLGLAEDPEAFAELK 212

HSP 2 Score: 31.9574 bits (71), Expect = 1.646e-17
Identity = 14/16 (87.50%), Postives = 15/16 (93.75%), Query Frame = 1 
Query:  523 KVKELKNGRLAMFYMF 570
            KVKE+KNGRLAMF MF
Sbjct:  212 KVKEIKNGRLAMFSMF 227
[Close]
BLAST of BQ623188 vs. ExPASy Swiss-Prot
Match: CB2E_SOLLC (Chlorophyll a-b binding protein 3A, chloroplastic (Fragments) OS=Solanum lycopersicum GN=CAB3A PE=3 SV=1)

HSP 1 Score: 77.0258 bits (188), Expect = 1.646e-17
Identity = 38/61 (62.30%), Postives = 43/61 (70.49%), Query Frame = 3 
Query:  342 NLIHAQSILAIWACQVVLMGFVEGYRIXXXXXXXXXXXXXXXXAFDPLGLADDPDQFAELK 524
            +L+HAQSILAIWACQVVLMG VEGYRI                +FDPLGLA+DP+ FAELK
Sbjct:  152 SLVHAQSILAIWACQVVLMGAVEGYRIAGGPLGEVVDPLYPGGSFDPLGLAEDPEAFAELK 212

HSP 2 Score: 31.9574 bits (71), Expect = 1.646e-17
Identity = 14/16 (87.50%), Postives = 15/16 (93.75%), Query Frame = 1 
Query:  523 KVKELKNGRLAMFYMF 570
            KVKE+KNGRLAMF MF
Sbjct:  212 KVKEIKNGRLAMFSMF 227
[Close]
BLAST of BQ623188 vs. ExPASy Swiss-Prot
Match: CB2C_SOLLC (Chlorophyll a-b binding protein 1C, chloroplastic (Fragments) OS=Solanum lycopersicum GN=CAB1C PE=3 SV=1)

HSP 1 Score: 77.0258 bits (188), Expect = 1.647e-17
Identity = 38/61 (62.30%), Postives = 43/61 (70.49%), Query Frame = 3 
Query:  342 NLIHAQSILAIWACQVVLMGFVEGYRIXXXXXXXXXXXXXXXXAFDPLGLADDPDQFAELK 524
            +L+HAQSILAIWACQVVLMG VEGYRI                +FDPLGLA+DP+ FAELK
Sbjct:  150 SLVHAQSILAIWACQVVLMGAVEGYRIAGGPLGEVVDPLYPGGSFDPLGLAEDPEAFAELK 210

HSP 2 Score: 31.9574 bits (71), Expect = 1.647e-17
Identity = 14/16 (87.50%), Postives = 15/16 (93.75%), Query Frame = 1 
Query:  523 KVKELKNGRLAMFYMF 570
            KVKE+KNGRLAMF MF
Sbjct:  210 KVKEIKNGRLAMFSMF 225
[Close]
BLAST of BQ623188 vs. ExPASy Swiss-Prot
Match: CB2A_SOLLC (Chlorophyll a-b binding protein 1A, chloroplastic (Fragments) OS=Solanum lycopersicum GN=CAB1A PE=3 SV=1)

HSP 1 Score: 77.0258 bits (188), Expect = 1.647e-17
Identity = 38/61 (62.30%), Postives = 43/61 (70.49%), Query Frame = 3 
Query:  342 NLIHAQSILAIWACQVVLMGFVEGYRIXXXXXXXXXXXXXXXXAFDPLGLADDPDQFAELK 524
            +L+HAQSILAIWACQVVLMG VEGYRI                +FDPLGLA+DP+ FAELK
Sbjct:  150 SLVHAQSILAIWACQVVLMGAVEGYRIAGGPLGEVVDPLYPGGSFDPLGLAEDPEAFAELK 210

HSP 2 Score: 31.9574 bits (71), Expect = 1.647e-17
Identity = 14/16 (87.50%), Postives = 15/16 (93.75%), Query Frame = 1 
Query:  523 KVKELKNGRLAMFYMF 570
            KVKE+KNGRLAMF MF
Sbjct:  210 KVKEIKNGRLAMFSMF 225
[Close]
BLAST of BQ623188 vs. ExPASy Swiss-Prot
Match: CB2D_SOLLC (Chlorophyll a-b binding protein 1D (Fragment) OS=Solanum lycopersicum GN=CAB1D PE=3 SV=1)

HSP 1 Score: 77.0258 bits (188), Expect = 1.726e-17
Identity = 38/61 (62.30%), Postives = 43/61 (70.49%), Query Frame = 3 
Query:  342 NLIHAQSILAIWACQVVLMGFVEGYRIXXXXXXXXXXXXXXXXAFDPLGLADDPDQFAELK 524
            +L+HAQSILAIWACQVVLMG VEGYRI                +FDPLGLA+DP+ FAELK
Sbjct:    1 SLVHAQSILAIWACQVVLMGAVEGYRIAGGPLGEVVDPLYPGGSFDPLGLAEDPEAFAELK 61

HSP 2 Score: 31.9574 bits (71), Expect = 1.726e-17
Identity = 14/16 (87.50%), Postives = 15/16 (93.75%), Query Frame = 1 
Query:  523 KVKELKNGRLAMFYMF 570
            KVKE+KNGRLAMF MF
Sbjct:   61 KVKEIKNGRLAMFSMF 76
[Close]
BLAST of BQ623188 vs. ExPASy Swiss-Prot
Match: CB21_RAPSA (Chlorophyll a-b binding of LHCII type 1 protein (Fragment) OS=Raphanus sativus PE=2 SV=1)

HSP 1 Score: 75.485 bits (184), Expect = 4.894e-17
Identity = 39/69 (56.52%), Postives = 45/69 (65.22%), Query Frame = 3 
Query:  321 LDYLGNPNLIHAQSILAIWACQVVLMGFVEGYRI-XXXXXXXXXXXXXXXXAFDPLGLADDPDQFAELK 524
            LDYLGNP+L+HAQSILAIWA QV+LMG VEGYR+                 +FDPL    DP+ FAELK
Sbjct:    1 LDYLGNPSLVHAQSILAIWATQVILMGAVEGYRVAGDGPLGEAEDLLYPGGSFDPLASLTDPEAFAELK 69

HSP 2 Score: 31.9574 bits (71), Expect = 4.894e-17
Identity = 14/16 (87.50%), Postives = 15/16 (93.75%), Query Frame = 1 
Query:  523 KVKELKNGRLAMFYMF 570
            KVKE+KNGRLAMF MF
Sbjct:   69 KVKEIKNGRLAMFSMF 84
[Close]
BLAST of BQ623188 vs. ExPASy Swiss-Prot
Match: CB121_HORVU (Chlorophyll a-b binding protein 1B-21, chloroplastic OS=Hordeum vulgare GN=LHC Ib-21 PE=1 SV=1)

HSP 1 Score: 75.0998 bits (183), Expect = 6.871e-15
Identity = 54/159 (33.96%), Postives = 72/159 (45.28%), Query Frame = 3 
Query:   51 TAQSTWDHSLSKHHHTLTGEFPGDYGWDTAGLSADPETFAKNRELEVIHSRWAMLGALGCVFPEILSKNGVKFGEAVWFKAGA-QIFSEGGLDYLGNPNLIHAQSILAIWACQVVLMGFVEGYRIXXXXXXXXXXXXXXXXAFDPLGLADDPDQFAELK 524
            T  + W     +  H L G  PGD+G+D  GL+  PE F + +E E+ H RWAML   G + PE L       G   W KA       +G   YLGNP  +   ++  I A + + + F E  R                 AFDPLG + DP +F ELK
Sbjct:   43 TMSAEWFPGQPRPAH-LDGSSPGDFGFDPLGLATVPENFERFKESEIYHCRWAMLCVPGVLVPEAL-------GLGNWVKAQEWAALPDGQATYLGNP--VPWGNLPTILAIEFLAIAFAEQQR---TMEKDPEKKKYPGGAFDPLGFSKDPAKFEELK 188

HSP 2 Score: 25.0238 bits (53), Expect = 6.871e-15
Identity = 10/12 (83.33%), Postives = 12/12 (100.00%), Query Frame = 1 
Query:  523 KVKELKNGRLAM 558
            K+KE+KNGRLAM
Sbjct:  188 KLKEIKNGRLAM 199
[Close]
BLAST of BQ623188 vs. ExPASy Swiss-Prot
Match: CB11_SOLLC (Chlorophyll a-b binding protein 6A, chloroplastic OS=Solanum lycopersicum GN=CAB6A PE=2 SV=1)

HSP 1 Score: 72.7886 bits (177), Expect = 3.307e-14
Identity = 51/143 (35.66%), Postives = 66/143 (46.15%), Query Frame = 3 
Query:   99 LTGEFPGDYGWDTAGLSADPETFAKNRELEVIHSRWAMLGALGCVFPEILSKNGVKFGEAVWFKAGAQIFSEGG-LDYLGNPNLIHAQSILAIWACQVVLMGFVEGYRIXXXXXXXXXXXXXXXXAFDPLGLADDPDQFAELK 524
            L G  PGD+G+D+ GL   P    + +E E+IH RWAML   G + PE L       G   W KA       GG   YLG P  +   ++  I A + + + FVE  R                 AFDPLG + DP +F ELK
Sbjct:   59 LDGSAPGDFGFDSLGLGEVPANLERYKESELIHCRWAMLAVPGIIVPEAL-------GLGNWVKAQEWAAIPGGQATYLGQP--VPWGTLPTILAIEFLAIAFVEHQR---SMEKDSEKKKYPGGAFDPLGYSKDPAKFEELK 189

HSP 2 Score: 25.0238 bits (53), Expect = 3.307e-14
Identity = 10/12 (83.33%), Postives = 12/12 (100.00%), Query Frame = 1 
Query:  523 KVKELKNGRLAM 558
            KVKE+KNGRLA+
Sbjct:  189 KVKEIKNGRLAL 200
[Close]
BLAST of BQ623188 vs. ExPASy Swiss-Prot
Match: CB12_PETHY (Chlorophyll a-b binding protein, chloroplastic OS=Petunia hybrida PE=2 SV=1)

HSP 1 Score: 74.7146 bits (182), Expect = 3.557e-13
Identity = 41/107 (38.32%), Postives = 58/107 (54.21%), Query Frame = 3 
Query:   99 LTGEFPGDYGWDTAGLSADPETFAKNRELEVIHSRWAMLGALGCVFPEILSKNGVKFGEAVWFKAGAQIFSEGGLDYLGNPNLIHAQSILAIWACQVVLMGFVEGYR 419
            L G  PGD+G+D  GL +DPE+   N + E++HSRWAMLGA G   PE L+K GV      W+ AG Q       +Y  +           ++  ++VL+G+ EG R
Sbjct:   78 LDGSLPGDFGFDPLGLGSDPESLKWNAQAELVHSRWAMLGAAGIFIPEFLTKIGV-LNTPSWYTAGEQ-------EYFTDTT--------TLFVIELVLIGWAEGRR 168
[Close]
BLAST of BQ623188 vs. ExPASy Swiss-Prot
Match: CB12_SOLLC (Chlorophyll a-b binding protein 7, chloroplastic OS=Solanum lycopersicum GN=CAB7 PE=3 SV=1)

HSP 1 Score: 73.9442 bits (180), Expect = 6.067e-13
Identity = 39/107 (36.45%), Postives = 60/107 (56.07%), Query Frame = 3 
Query:   99 LTGEFPGDYGWDTAGLSADPETFAKNRELEVIHSRWAMLGALGCVFPEILSKNGVKFGEAVWFKAGAQIFSEGGLDYLGNPNLIHAQSILAIWACQVVLMGFVEGYR 419
            L G  PGD+G+D  GL++DPE+   N++ E++H RWAMLGA G   PE+L+K G+      W+ AG Q       +Y  +           ++  ++VL+G+ EG R
Sbjct:   78 LDGSLPGDFGFDPLGLASDPESLRWNQQAELVHCRWAMLGAAGIFIPELLTKIGI-LNTPSWYTAGEQ-------EYFTDTT--------TLFIVELVLIGWAEGRR 168
The following BLAST results are available for this feature:
BLAST of BQ623188 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 71
Match NameE-valueIdentityDescription
CB2F_SOLLC1.646e-1762.30Chlorophyll a-b binding protein 3B, chloroplastic ... [more]
CB2E_SOLLC1.646e-1762.30Chlorophyll a-b binding protein 3A, chloroplastic ... [more]
CB2C_SOLLC1.647e-1762.30Chlorophyll a-b binding protein 1C, chloroplastic ... [more]
CB2A_SOLLC1.647e-1762.30Chlorophyll a-b binding protein 1A, chloroplastic ... [more]
CB2D_SOLLC1.726e-1762.30Chlorophyll a-b binding protein 1D (Fragment) OS=S... [more]
CB21_RAPSA4.894e-1756.52Chlorophyll a-b binding of LHCII type 1 protein (F... [more]
CB121_HORVU6.871e-1533.96Chlorophyll a-b binding protein 1B-21, chloroplast... [more]
CB11_SOLLC3.307e-1435.66Chlorophyll a-b binding protein 6A, chloroplastic ... [more]
CB12_PETHY3.557e-1338.32Chlorophyll a-b binding protein, chloroplastic OS=... [more]
CB12_SOLLC6.067e-1336.45Chlorophyll a-b binding protein 7, chloroplastic O... [more]

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Properties
Property NameValue
Genbank descriptionUSDA-FP_00279 Ridge pineapple sweet orange entire seedling Citrus sinensis cDNA clone USDA-FP_00279 5, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>BQ623188 ID=BQ623188; Name=BQ623188; organism=Citrus sinensis; type=EST; length=576bp
CATGAGGAGGACTGTCAAATCCGCTCCCCAGAGCATCTGGTACGGCCCAG
ACCGCCCAAAGTACTTGGGACCATTCTCTGAGCAAACACCATCATACATT
GACTGGTGAGTTCCCTGGTGACTATGGCTGGGATACCGCTGGTTTATCAG
CAGACCCCGAGACATTTGCTAAGAACCGTGAGCTAGAGGTGATCCACAGC
AGATGGGCAATGCTTGGAGCTCTTGGCTGCGTCTTCCCTGAAATCCTCTC
CAAGAATGGAGTGAAGTTCGGCGAAGCAGTTTGGTTCAAGGCTGGCGCTC
AAATATTCTCTGAAGGTGGCCTTGACTATCTTGGCAACCCCAACCTCATT
CATGCTCAGAGCATTTTGGCTATCTGGGCCTGCCAGGTTGTGCTTATGGG
TTTTGTTGAAGGATACAGAATTGGTGGCGGTCCTCTTGGTGAAGGACTTG
ACCCACTTTACCCTGGTGGTGCTTTTGACCCACTTGGTTTGGCTGATGAC
CCCGATCAATTTGCTGAGTTGAAAGGTCAAGGAGCTCAAGAATGGCCGTC
TGGCTATGTTCTACATGTTTTGGATT
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