BQ623188

Overview
NameBQ623188
Unique NameBQ623188
TypeEST
OrganismCitrus sinensis (Sweet orange)
Sequence length576
Libraries
Library NameType
Ridge pineapple sweet orange entire seedlingcdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Alignments
Feature NameTypeLocationAnalysis
Csv1_Contig1260 contig Csv1_Contig1260:580..1152. BLAST: Citrus Unigene V1 Contigs to Prunus persica proteins V1
Homology
BLAST of BQ623188 vs. ExPASy Swiss-Prot
Match: LH18_EUGGR (Light-harvesting complex I LH38 proteins (Fragment) OS=Euglena gracilis PE=2 SV=1)

HSP 1 Score: 67.0106 bits (162), Expect = 7.416e-11
Identity = 31/69 (44.93%), Postives = 43/69 (62.32%), Query Frame = 3
Query:   99 LTGEFPGDYGWDTAGLSADPETFAKNRELEVIHSRWAMLGALGCVFPEILSKNGVKFGEAVWFKAGAQI 305
            LTGE+P D G+D   L+ADP+ +A+ R  EV H R AML  +GC+ PE+L       G+  WF+AG  +
Sbjct:  200 LTGEYPADRGFDPLNLAADPDVYARMRVAEVFHGRLAMLCTVGCIVPELL-------GKGAWFEAGDSV 261          
The following BLAST results are available for this feature:
BLAST of BQ623188 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 71
Match NameE-valueIdentityDescription
LH18_EUGGR7.416e-1144.93Light-harvesting complex I LH38 proteins (Fragment... [more]

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Properties
Property NameValue
Genbank descriptionUSDA-FP_00279 Ridge pineapple sweet orange entire seedling Citrus sinensis cDNA clone USDA-FP_00279 5, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>BQ623188 ID=BQ623188; Name=BQ623188; organism=Citrus sinensis; type=EST; length=576bp
CATGAGGAGGACTGTCAAATCCGCTCCCCAGAGCATCTGGTACGGCCCAG
ACCGCCCAAAGTACTTGGGACCATTCTCTGAGCAAACACCATCATACATT
GACTGGTGAGTTCCCTGGTGACTATGGCTGGGATACCGCTGGTTTATCAG
CAGACCCCGAGACATTTGCTAAGAACCGTGAGCTAGAGGTGATCCACAGC
AGATGGGCAATGCTTGGAGCTCTTGGCTGCGTCTTCCCTGAAATCCTCTC
CAAGAATGGAGTGAAGTTCGGCGAAGCAGTTTGGTTCAAGGCTGGCGCTC
AAATATTCTCTGAAGGTGGCCTTGACTATCTTGGCAACCCCAACCTCATT
CATGCTCAGAGCATTTTGGCTATCTGGGCCTGCCAGGTTGTGCTTATGGG
TTTTGTTGAAGGATACAGAATTGGTGGCGGTCCTCTTGGTGAAGGACTTG
ACCCACTTTACCCTGGTGGTGCTTTTGACCCACTTGGTTTGGCTGATGAC
CCCGATCAATTTGCTGAGTTGAAAGGTCAAGGAGCTCAAGAATGGCCGTC
TGGCTATGTTCTACATGTTTTGGATT
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