BQ623201

Overview
NameBQ623201
Unique NameBQ623201
TypeEST
OrganismCitrus sinensis (Sweet orange)
Sequence length538
Libraries
Library NameType
Ridge pineapple sweet orange entire seedlingcdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Alignments
Feature NameTypeLocationAnalysis
Csv1_Contig2300 contig Csv1_Contig2300:504..1041. BLAST: Citrus Unigene V1 Contigs to Prunus persica proteins V1
Homology
BLAST of BQ623201 vs. ExPASy Swiss-Prot
Match: S23A3_MOUSE (Solute carrier family 23 member 3 OS=Mus musculus GN=Slc23a3 PE=2 SV=1)

HSP 1 Score: 83.1889 bits (204), Expect = 8.696e-16
Identity = 42/134 (31.34%), Postives = 62/134 (46.27%), Query Frame = 3
Query:  120 SSAPWIKVPYPFQWGTPIFRASHVFGMIGAALVTSAESTGTFIAASRFAGATAPPAHVLSRSIGLQGIGMLVEGIFGSLVGTTASVENVGLLGLTHIGSRRVVQISTAFMXXXXXXXXXXXXXXXIPLPIFAAI 521
            S APW  +P+P +W  P+     +   I  AL  S  S G +    +    + PP H  SR + L+G+G ++ G+ GS +GT +S  NVG + L   GSRRV  +   F                IPLP+   +
Sbjct:  297 SDAPWFWLPHPGEWEWPLLTPRALAAGISMALAASTSSLGCYALCGQLLRLSPPPPHACSRGLSLEGLGSVLAGLLGSPLGTASSFPNVGTVSLFQTGSRRVAHLVGLFCMGLGLSPRLAQLFTSIPLPVLGGV 430          
BLAST of BQ623201 vs. ExPASy Swiss-Prot
Match: S23A3_HUMAN (Solute carrier family 23 member 3 OS=Homo sapiens GN=SLC23A3 PE=1 SV=2)

HSP 1 Score: 82.4185 bits (202), Expect = 1.483e-15
Identity = 50/173 (28.90%), Postives = 78/173 (45.09%), Query Frame = 3
Query:    3 LFCIGVVWAFAAILTAAGAYNNVPEQTKLSCRTDRSYLLSSAPWIKVPYPFQWGTPIFRASHVFGMIGAALVTSAESTGTFIAASRFAGATAPPAHVLSRSIGLQGIGMLVEGIFGSLVGTTASVENVGLLGLTHIGSRRVVQISTAFMXXXXXXXXXXXXXXXIPLPIFAAI 521
            L  +  VW    I++A   ++ +P++  LS  T        APWI +P+P +W  P+     +   I  AL  S  S G +    R      PP H  SR + L+G+G ++ G+ GS +GT +S  NVG +GL   GS++V  +                    IPLP+   +
Sbjct:  268 LIPVACVW----IVSAFVGFSVIPQE--LSAPT-------KAPWIWLPHPGEWNWPLLTPRALAAGISMALAASTSSLGCYALCGRLLHLPPPPPHACSRGLSLEGLGSVLAGLLGSPMGTASSFPNVGKVGLIQAGSQQVAHLVGLLCVGLGLSPRLAQLLTTIPLPVVGGV 427          
The following BLAST results are available for this feature:
BLAST of BQ623201 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 22
Match NameE-valueIdentityDescription
S23A3_MOUSE8.696e-1631.34Solute carrier family 23 member 3 OS=Mus musculus ... [more]
S23A3_HUMAN1.483e-1528.90Solute carrier family 23 member 3 OS=Homo sapiens ... [more]

Pages

back to top
Properties
Property NameValue
Genbank descriptionUSDA-FP_00292 Ridge pineapple sweet orange entire seedling Citrus sinensis cDNA clone USDA-FP_00292 5, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>BQ623201 ID=BQ623201; Name=BQ623201; organism=Citrus sinensis; type=EST; length=538bp
TGCTTTTCTGCATTGGAGTTGTTTGGGCTTTTGCTGCCATCCTCACTGCA
GCTGGTGCTTACAATAATGTTCCAGAGCAAACTAAACTGAGCTGCCGCAC
AGATCGTTCTTATCTTTTGTCTTCTGCTCCTTGGATTAAGGTTCCTTACC
CATTTCAGTGGGGTACTCCCATATTCAGAGCAAGCCATGTCTTTGGGATG
ATAGGAGCAGCACTTGTAACATCTGCAGAGTCAACTGGAACATTTATTGC
AGCATCACGGTTTGCAGGTGCTACAGCTCCTCCAGCACATGTCCTCAGCC
GAAGTATTGGCCTGCAGGGTATTGGCATGCTGGTTGAAGGAATTTTTGGT
TCTCTTGTTGGTACTACTGCATCTGTGGAAAATGTTGGCCTCCTCGGCCT
AACACACATAGGCAGCAGAAGAGTGGTGCAGATTTCAACTGCGTTCATGA
TATTTTTCTCCATATTTGGGAAGTTTGGTGCCTTCTTTGCATCCATTCCA
TTGCCAATATTTGCTGCCATATACTGTGTTCTATTAGG
back to top