BQ623203

Overview
NameBQ623203
Unique NameBQ623203
TypeEST
OrganismCitrus sinensis (Sweet orange)
Sequence length530
Libraries
Library NameType
Ridge pineapple sweet orange entire seedlingcdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Alignments
Feature NameTypeLocationAnalysis
Csv1_Contig5593 contig Csv1_Contig5593:28..555. BLAST: Citrus Unigene V1 Contigs to Prunus persica proteins V1
Homology
[Close]
BLAST of BQ623203 vs. ExPASy Swiss-Prot
Match: RL43_ASHGO (60S ribosomal protein L43 OS=Ashbya gossypii GN=RPL43 PE=3 SV=1)

HSP 1 Score: 112.464 bits (280), Expect = 3.150e-25
Identity = 51/76 (67.11%), Postives = 60/76 (78.95%), Query Frame = 2 
Query:  107 RYGASLRKQIKKMEVSQHSKYFCEFCGKYAVKRKAVGIWGCKDCGKVKAGGAYTLNTASAVTVRSTIRRLREQTES 334
            RYG+SLR+Q+KK+EV QH++Y C FCGK AVKR A GIW C  C K  AGGAYT +TA+A TVRSTIRRLRE  E+
Sbjct:   17 RYGSSLRRQVKKLEVQQHARYDCSFCGKKAVKRGAAGIWNCSSCKKTVAGGAYTFSTAAAATVRSTIRRLREMAEA 92

HSP 2 Score: 23.483 bits (49), Expect = 3.150e-25
Identity = 9/11 (81.82%), Postives = 9/11 (81.82%), Query Frame = 1 
Query:   70 TKKAGIVGKYG 102
            TKK GI GKYG
Sbjct:    5 TKKVGITGKYG 15
[Close]
BLAST of BQ623203 vs. ExPASy Swiss-Prot
Match: RL37A_CHICK (60S ribosomal protein L37a OS=Gallus gallus GN=RPL37A PE=3 SV=2)

HSP 1 Score: 108.612 bits (270), Expect = 4.100e-25
Identity = 50/72 (69.44%), Postives = 58/72 (80.56%), Query Frame = 2 
Query:  107 RYGASLRKQIKKMEVSQHSKYFCEFCGKYAVKRKAVGIWGCKDCGKVKAGGAYTLNTASAVTVRSTIRRLRE 322
            RYGASLRK +KK+E+SQH+KY C FCGK  +KRKAVGIW C  C K  AGGA+T NT SAVTV+S IRRL+E
Sbjct:   17 RYGASLRKMVKKIEISQHAKYTCSFCGKTKMKRKAVGIWHCGSCMKTVAGGAWTYNTTSAVTVKSAIRRLKE 88

HSP 2 Score: 26.9498 bits (58), Expect = 4.100e-25
Identity = 11/12 (91.67%), Postives = 11/12 (91.67%), Query Frame = 1 
Query:   70 TKKAGIVGKYGT 105
            TKK GIVGKYGT
Sbjct:    5 TKKVGIVGKYGT 16
[Close]
BLAST of BQ623203 vs. ExPASy Swiss-Prot
Match: RL37A_CAEEL (60S ribosomal protein L37a OS=Caenorhabditis elegans GN=rpl-43 PE=2 SV=3)

HSP 1 Score: 108.612 bits (270), Expect = 4.100e-25
Identity = 51/75 (68.00%), Postives = 57/75 (76.00%), Query Frame = 2 
Query:  107 RYGASLRKQIKKMEVSQHSKYFCEFCGKYAVKRKAVGIWGCKDCGKVKAGGAYTLNTASAVTVRSTIRRLREQTE 331
            RYGASLRK  KK+EV+QHS+Y C FCGK A+KRKA GIW C  C KV AGGAY   T +A TVRSTIRRLR+  E
Sbjct:   17 RYGASLRKMAKKLEVAQHSRYTCSFCGKEAMKRKATGIWNCAKCHKVVAGGAYVYGTVTAATVRSTIRRLRDLKE 91

HSP 2 Score: 26.9498 bits (58), Expect = 4.100e-25
Identity = 11/12 (91.67%), Postives = 11/12 (91.67%), Query Frame = 1 
Query:   70 TKKAGIVGKYGT 105
            TKK GIVGKYGT
Sbjct:    5 TKKVGIVGKYGT 16
[Close]
BLAST of BQ623203 vs. ExPASy Swiss-Prot
Match: RL37A_XENLA (60S ribosomal protein L37a OS=Xenopus laevis GN=rpl37a PE=3 SV=3)

HSP 1 Score: 108.227 bits (269), Expect = 5.338e-25
Identity = 49/72 (68.06%), Postives = 59/72 (81.94%), Query Frame = 2 
Query:  107 RYGASLRKQIKKMEVSQHSKYFCEFCGKYAVKRKAVGIWGCKDCGKVKAGGAYTLNTASAVTVRSTIRRLRE 322
            R+GASLRK +KK+E+SQH+KY C FCGK  +KRKAVGIW C  C K+ AGGA+T NT SAVTV+S IRRL+E
Sbjct:   17 RFGASLRKMVKKIEISQHAKYTCSFCGKTKMKRKAVGIWHCGSCMKIVAGGAWTYNTTSAVTVKSAIRRLKE 88

HSP 2 Score: 26.9498 bits (58), Expect = 5.338e-25
Identity = 11/12 (91.67%), Postives = 11/12 (91.67%), Query Frame = 1 
Query:   70 TKKAGIVGKYGT 105
            TKK GIVGKYGT
Sbjct:    5 TKKVGIVGKYGT 16
[Close]
BLAST of BQ623203 vs. ExPASy Swiss-Prot
Match: RL37A_RAT (60S ribosomal protein L37a OS=Rattus norvegicus GN=Rpl37a PE=1 SV=2)

HSP 1 Score: 107.457 bits (267), Expect = 9.044e-25
Identity = 49/72 (68.06%), Postives = 58/72 (80.56%), Query Frame = 2 
Query:  107 RYGASLRKQIKKMEVSQHSKYFCEFCGKYAVKRKAVGIWGCKDCGKVKAGGAYTLNTASAVTVRSTIRRLRE 322
            RYGASLRK +KK+E+SQH+KY C FCGK  +KR+AVGIW C  C K  AGGA+T NT SAVTV+S IRRL+E
Sbjct:   17 RYGASLRKMVKKIEISQHAKYTCSFCGKTKMKRRAVGIWHCGSCMKTVAGGAWTYNTTSAVTVKSAIRRLKE 88

HSP 2 Score: 26.9498 bits (58), Expect = 9.044e-25
Identity = 11/12 (91.67%), Postives = 11/12 (91.67%), Query Frame = 1 
Query:   70 TKKAGIVGKYGT 105
            TKK GIVGKYGT
Sbjct:    5 TKKVGIVGKYGT 16
[Close]
BLAST of BQ623203 vs. ExPASy Swiss-Prot
Match: RL37A_PONAB (60S ribosomal protein L37a OS=Pongo abelii GN=RPL37A PE=3 SV=3)

HSP 1 Score: 107.457 bits (267), Expect = 9.044e-25
Identity = 49/72 (68.06%), Postives = 58/72 (80.56%), Query Frame = 2 
Query:  107 RYGASLRKQIKKMEVSQHSKYFCEFCGKYAVKRKAVGIWGCKDCGKVKAGGAYTLNTASAVTVRSTIRRLRE 322
            RYGASLRK +KK+E+SQH+KY C FCGK  +KR+AVGIW C  C K  AGGA+T NT SAVTV+S IRRL+E
Sbjct:   17 RYGASLRKMVKKIEISQHAKYTCSFCGKTKMKRRAVGIWHCGSCMKTVAGGAWTYNTTSAVTVKSAIRRLKE 88

HSP 2 Score: 26.9498 bits (58), Expect = 9.044e-25
Identity = 11/12 (91.67%), Postives = 11/12 (91.67%), Query Frame = 1 
Query:   70 TKKAGIVGKYGT 105
            TKK GIVGKYGT
Sbjct:    5 TKKVGIVGKYGT 16
[Close]
BLAST of BQ623203 vs. ExPASy Swiss-Prot
Match: RL37A_MOUSE (60S ribosomal protein L37a OS=Mus musculus GN=Rpl37a PE=2 SV=2)

HSP 1 Score: 107.457 bits (267), Expect = 9.044e-25
Identity = 49/72 (68.06%), Postives = 58/72 (80.56%), Query Frame = 2 
Query:  107 RYGASLRKQIKKMEVSQHSKYFCEFCGKYAVKRKAVGIWGCKDCGKVKAGGAYTLNTASAVTVRSTIRRLRE 322
            RYGASLRK +KK+E+SQH+KY C FCGK  +KR+AVGIW C  C K  AGGA+T NT SAVTV+S IRRL+E
Sbjct:   17 RYGASLRKMVKKIEISQHAKYTCSFCGKTKMKRRAVGIWHCGSCMKTVAGGAWTYNTTSAVTVKSAIRRLKE 88

HSP 2 Score: 26.9498 bits (58), Expect = 9.044e-25
Identity = 11/12 (91.67%), Postives = 11/12 (91.67%), Query Frame = 1 
Query:   70 TKKAGIVGKYGT 105
            TKK GIVGKYGT
Sbjct:    5 TKKVGIVGKYGT 16
[Close]
BLAST of BQ623203 vs. ExPASy Swiss-Prot
Match: RL37A_HUMAN (60S ribosomal protein L37a OS=Homo sapiens GN=RPL37A PE=1 SV=2)

HSP 1 Score: 107.457 bits (267), Expect = 9.044e-25
Identity = 49/72 (68.06%), Postives = 58/72 (80.56%), Query Frame = 2 
Query:  107 RYGASLRKQIKKMEVSQHSKYFCEFCGKYAVKRKAVGIWGCKDCGKVKAGGAYTLNTASAVTVRSTIRRLRE 322
            RYGASLRK +KK+E+SQH+KY C FCGK  +KR+AVGIW C  C K  AGGA+T NT SAVTV+S IRRL+E
Sbjct:   17 RYGASLRKMVKKIEISQHAKYTCSFCGKTKMKRRAVGIWHCGSCMKTVAGGAWTYNTTSAVTVKSAIRRLKE 88

HSP 2 Score: 26.9498 bits (58), Expect = 9.044e-25
Identity = 11/12 (91.67%), Postives = 11/12 (91.67%), Query Frame = 1 
Query:   70 TKKAGIVGKYGT 105
            TKK GIVGKYGT
Sbjct:    5 TKKVGIVGKYGT 16
[Close]
BLAST of BQ623203 vs. ExPASy Swiss-Prot
Match: RL37A_BOVIN (60S ribosomal protein L37a OS=Bos taurus GN=RPL37A PE=3 SV=3)

HSP 1 Score: 107.457 bits (267), Expect = 9.044e-25
Identity = 49/72 (68.06%), Postives = 58/72 (80.56%), Query Frame = 2 
Query:  107 RYGASLRKQIKKMEVSQHSKYFCEFCGKYAVKRKAVGIWGCKDCGKVKAGGAYTLNTASAVTVRSTIRRLRE 322
            RYGASLRK +KK+E+SQH+KY C FCGK  +KR+AVGIW C  C K  AGGA+T NT SAVTV+S IRRL+E
Sbjct:   17 RYGASLRKMVKKIEISQHAKYTCSFCGKTKMKRRAVGIWHCGSCMKTVAGGAWTYNTTSAVTVKSAIRRLKE 88

HSP 2 Score: 26.9498 bits (58), Expect = 9.044e-25
Identity = 11/12 (91.67%), Postives = 11/12 (91.67%), Query Frame = 1 
Query:   70 TKKAGIVGKYGT 105
            TKK GIVGKYGT
Sbjct:    5 TKKVGIVGKYGT 16
[Close]
BLAST of BQ623203 vs. ExPASy Swiss-Prot
Match: RL37A_ICTPU (60S ribosomal protein L37a OS=Ictalurus punctatus GN=rpl37a PE=3 SV=3)

HSP 1 Score: 106.686 bits (265), Expect = 1.532e-24
Identity = 48/75 (64.00%), Postives = 59/75 (78.67%), Query Frame = 2 
Query:  107 RYGASLRKQIKKMEVSQHSKYFCEFCGKYAVKRKAVGIWGCKDCGKVKAGGAYTLNTASAVTVRSTIRRLREQTE 331
            RYGASLRK +KK+E+SQH+KY C FCGK  +KR+AVGIW C  C K  AGGA+T NT SAVTV+S I+RL+E  +
Sbjct:   17 RYGASLRKMVKKIEISQHAKYTCSFCGKTKMKRRAVGIWHCGSCMKTVAGGAWTYNTTSAVTVKSAIKRLKEMKD 91

HSP 2 Score: 26.9498 bits (58), Expect = 1.532e-24
Identity = 11/12 (91.67%), Postives = 11/12 (91.67%), Query Frame = 1 
Query:   70 TKKAGIVGKYGT 105
            TKK GIVGKYGT
Sbjct:    5 TKKVGIVGKYGT 16
The following BLAST results are available for this feature:
BLAST of BQ623203 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 31
Match NameE-valueIdentityDescription
RL43_ASHGO3.150e-2567.1160S ribosomal protein L43 OS=Ashbya gossypii GN=RP... [more]
RL37A_CHICK4.100e-2569.4460S ribosomal protein L37a OS=Gallus gallus GN=RPL... [more]
RL37A_CAEEL4.100e-2568.0060S ribosomal protein L37a OS=Caenorhabditis elega... [more]
RL37A_XENLA5.338e-2568.0660S ribosomal protein L37a OS=Xenopus laevis GN=rp... [more]
RL37A_RAT9.044e-2568.0660S ribosomal protein L37a OS=Rattus norvegicus GN... [more]
RL37A_PONAB9.044e-2568.0660S ribosomal protein L37a OS=Pongo abelii GN=RPL3... [more]
RL37A_MOUSE9.044e-2568.0660S ribosomal protein L37a OS=Mus musculus GN=Rpl3... [more]
RL37A_HUMAN9.044e-2568.0660S ribosomal protein L37a OS=Homo sapiens GN=RPL3... [more]
RL37A_BOVIN9.044e-2568.0660S ribosomal protein L37a OS=Bos taurus GN=RPL37A... [more]
RL37A_ICTPU1.532e-2464.0060S ribosomal protein L37a OS=Ictalurus punctatus ... [more]

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Properties
Property NameValue
Genbank descriptionUSDA-FP_00294 Ridge pineapple sweet orange entire seedling Citrus sinensis cDNA clone USDA-FP_00294 5, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>BQ623203 ID=BQ623203; Name=BQ623203; organism=Citrus sinensis; type=EST; length=530bp
CGTCTCAAACAGCCGCTGCTTGTTGAAGAGCTACAGACCTTCGCTCCAAC
GCCACAATGACCAAGCTGTACGAAGAAGGCTGGAATCGTTGGAAAGTATG
GTACCCCGTTATGGTGCCAGTTTGAGGAAGCAAATTAAGAAGATGGAGGT
TAGTCAGCATAGCAAATATTTCTGCGAATTTTGCGGGAAGTATGCGGTGA
AGAGGAAAGCTGTTGGCATTTGGGGCTGCAAGGACTGTGGGAAAGTCAAG
GCAGGCGGTGCCTACACTTTGAACACTGCTAGTGCTGTGACTGTGAGGAG
CACAATCCGTAGGTTGAGGGAGCAAACTGAAAGCTGAGCTTGCCACCATT
GGCTTACTCCCGTGTCTTAGGTCGTTTGATCTTTAGTTTCGGATACAACC
TTAAATCATTTTTGATGTTGCTTTATTTCTAGATGCAAAACAATTGGTTG
TTGGAACATGAAACTTTTGGCTGTGTTTTGACTCTTGAGATGTTCATTCG
CTATTTTTCCTATGAAATTATGTTATCTAG
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