BQ623203

Overview
NameBQ623203
Unique NameBQ623203
TypeEST
OrganismCitrus sinensis (Sweet orange)
Sequence length530
Libraries
Library NameType
Ridge pineapple sweet orange entire seedlingcdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Alignments
Feature NameTypeLocationAnalysis
Csv1_Contig5593 contig Csv1_Contig5593:28..555. BLAST: Citrus Unigene V1 Contigs to Prunus persica proteins V1
Homology
BLAST of BQ623203 vs. ExPASy Swiss-Prot
Match: RL37A_SCHMA (60S ribosomal protein L37a (Fragment) OS=Schistosoma mansoni PE=3 SV=1)

HSP 1 Score: 108.227 bits (269), Expect = 1.995e-24
Identity = 50/76 (65.79%), Postives = 60/76 (78.95%), Query Frame = 2
Query:  107 RYGASLRKQIKKMEVSQHSKYFCEFCGKYAVKRKAVGIWGCKDCGKVKAGGAYTLNTASAVTVRSTIRRLREQTES 334
            RYGASLRK IKK+E+SQH+KY C FCGK ++KRKA GIW CK C KV AGGAY  +T +A T+R+ IRRLR+  ES
Sbjct:   16 RYGASLRKTIKKIEISQHAKYNCNFCGKDSLKRKAAGIWECKACKKVVAGGAYVCSTTAATTIRAAIRRLRDAHES 91          

HSP 2 Score: 25.0238 bits (53), Expect = 1.995e-24
Identity = 10/11 (90.91%), Postives = 10/11 (90.91%), Query Frame = 1
Query:   70 TKKAGIVGKYG 102
            TKK GIVGKYG
Sbjct:    4 TKKVGIVGKYG 14          
BLAST of BQ623203 vs. ExPASy Swiss-Prot
Match: RL37A_OSTOS (60S ribosomal protein L37a OS=Ostertagia ostertagi GN=rpl-37a PE=3 SV=3)

HSP 1 Score: 106.301 bits (264), Expect = 1.995e-24
Identity = 48/75 (64.00%), Postives = 57/75 (76.00%), Query Frame = 2
Query:  107 RYGASLRKQIKKMEVSQHSKYFCEFCGKYAVKRKAVGIWGCKDCGKVKAGGAYTLNTASAVTVRSTIRRLREQTE 331
            RYGASLRK +KKME++QHS+Y C FCGK A++R AVGIW C  C K  AGGAY   T +A TVRST+RRLR+  E
Sbjct:   17 RYGASLRKMVKKMEITQHSRYTCPFCGKDAMRRGAVGIWNCSKCKKTVAGGAYVYGTVAAATVRSTVRRLRDLKE 91          

HSP 2 Score: 26.9498 bits (58), Expect = 1.995e-24
Identity = 11/12 (91.67%), Postives = 11/12 (91.67%), Query Frame = 1
Query:   70 TKKAGIVGKYGT 105
            TKK GIVGKYGT
Sbjct:    5 TKKVGIVGKYGT 16          
BLAST of BQ623203 vs. ExPASy Swiss-Prot
Match: RL43_YEAST (60S ribosomal protein L43 OS=Saccharomyces cerevisiae GN=RPL43A PE=1 SV=2)

HSP 1 Score: 108.997 bits (271), Expect = 3.379e-24
Identity = 49/76 (64.47%), Postives = 60/76 (78.95%), Query Frame = 2
Query:  107 RYGASLRKQIKKMEVSQHSKYFCEFCGKYAVKRKAVGIWGCKDCGKVKAGGAYTLNTASAVTVRSTIRRLREQTES 334
            RYG+SLR+Q+KK+E+ QH++Y C FCGK  VKR A GIW C  C K  AGGAYT++TA+A TVRSTIRRLRE  E+
Sbjct:   17 RYGSSLRRQVKKLEIQQHARYDCSFCGKKTVKRGAAGIWTCSCCKKTVAGGAYTVSTAAAATVRSTIRRLREMVEA 92          

HSP 2 Score: 23.483 bits (49), Expect = 3.379e-24
Identity = 9/11 (81.82%), Postives = 9/11 (81.82%), Query Frame = 1
Query:   70 TKKAGIVGKYG 102
            TKK GI GKYG
Sbjct:    5 TKKVGITGKYG 15          
BLAST of BQ623203 vs. ExPASy Swiss-Prot
Match: RL43_CANGA (60S ribosomal protein L43 OS=Candida glabrata GN=RPL43 PE=3 SV=1)

HSP 1 Score: 108.612 bits (270), Expect = 4.399e-24
Identity = 48/76 (63.16%), Postives = 60/76 (78.95%), Query Frame = 2
Query:  107 RYGASLRKQIKKMEVSQHSKYFCEFCGKYAVKRKAVGIWGCKDCGKVKAGGAYTLNTASAVTVRSTIRRLREQTES 334
            RYG+SLR+Q+KK+EV QH++Y C FCGK  V+R A GIW C  C K  AGGAYT++TA+A TVRSTIRRLR+  E+
Sbjct:   17 RYGSSLRRQVKKLEVQQHARYDCSFCGKKTVRRGAAGIWSCHSCKKTVAGGAYTVSTAAAATVRSTIRRLRDMVEA 92          

HSP 2 Score: 23.483 bits (49), Expect = 4.399e-24
Identity = 9/11 (81.82%), Postives = 9/11 (81.82%), Query Frame = 1
Query:   70 TKKAGIVGKYG 102
            TKK GI GKYG
Sbjct:    5 TKKVGITGKYG 15          
BLAST of BQ623203 vs. ExPASy Swiss-Prot
Match: RL37A_DROME (60S ribosomal protein L37a OS=Drosophila melanogaster GN=RpL37A PE=1 SV=3)

HSP 1 Score: 103.605 bits (257), Expect = 1.262e-23
Identity = 46/75 (61.33%), Postives = 57/75 (76.00%), Query Frame = 2
Query:  107 RYGASLRKQIKKMEVSQHSKYFCEFCGKYAVKRKAVGIWGCKDCGKVKAGGAYTLNTASAVTVRSTIRRLREQTE 331
            RYGASLRK +KKME++QHSKY C FCGK ++KR  VGIW CK C +  AGGA+  +T +A +VRS +RRLRE  E
Sbjct:   17 RYGASLRKMVKKMEITQHSKYTCSFCGKDSMKRAVVGIWSCKRCKRTVAGGAWVYSTTAAASVRSAVRRLRETKE 91          

HSP 2 Score: 26.9498 bits (58), Expect = 1.262e-23
Identity = 11/12 (91.67%), Postives = 11/12 (91.67%), Query Frame = 1
Query:   70 TKKAGIVGKYGT 105
            TKK GIVGKYGT
Sbjct:    5 TKKVGIVGKYGT 16          
BLAST of BQ623203 vs. ExPASy Swiss-Prot
Match: RL37A_MYXGL (60S ribosomal protein L37a (Fragment) OS=Myxine glutinosa GN=rpl37a PE=3 SV=1)

HSP 1 Score: 108.997 bits (271), Expect = 1.437e-23
Identity = 50/75 (66.67%), Postives = 60/75 (80.00%), Query Frame = 2
Query:  107 RYGASLRKQIKKMEVSQHSKYFCEFCGKYAVKRKAVGIWGCKDCGKVKAGGAYTLNTASAVTVRSTIRRLREQTE 331
            RYGASLRK +KK+E++QHSKY C FCGK  +KR+AVGIW C  C K  AGGA+T NT+SAVTV+S IRRLRE  +
Sbjct:   10 RYGASLRKMVKKIEITQHSKYTCTFCGKTKMKRRAVGIWHCGSCMKTVAGGAWTYNTSSAVTVKSAIRRLREMKD 84          
BLAST of BQ623203 vs. ExPASy Swiss-Prot
Match: RL37A_PLAF7 (60S ribosomal protein L37a OS=Plasmodium falciparum (isolate 3D7) GN=RPL37A PE=3 SV=1)

HSP 1 Score: 99.3673 bits (246), Expect = 1.112e-21
Identity = 46/75 (61.33%), Postives = 56/75 (74.67%), Query Frame = 2
Query:  107 RYGASLRKQIKKMEVSQHSKYFCEFCGKYAVKRKAVGIWGCKDCGKVKAGGAYTLNTASAVTVRSTIRRLREQTE 331
            RYG+SLRKQIKK+E+ QH+KY C FCGK A KR  VGIW CK C +   GGA++L T +AV  +STI RLR+Q E
Sbjct:   17 RYGSSLRKQIKKIELMQHAKYLCTFCGKTATKRTCVGIWKCKKCKRKVCGGAWSLTTPAAVAAKSTIIRLRKQKE 91          

HSP 2 Score: 24.6386 bits (52), Expect = 1.112e-21
Identity = 9/12 (75.00%), Postives = 10/12 (83.33%), Query Frame = 1
Query:   70 TKKAGIVGKYGT 105
            TKK G+ GKYGT
Sbjct:    5 TKKVGLTGKYGT 16          
BLAST of BQ623203 vs. ExPASy Swiss-Prot
Match: RL43B_SCHPO (60S ribosomal protein L43-B OS=Schizosaccharomyces pombe GN=rpl43b PE=2 SV=1)

HSP 1 Score: 100.138 bits (248), Expect = 1.883e-21
Identity = 47/77 (61.04%), Postives = 57/77 (74.03%), Query Frame = 2
Query:  107 RYGASLRKQIKKMEVSQHSKYFCEFCGKYAVKRKAVGIWGC--KDCGKVKAGGAYTLNTASAVTVRSTIRRLREQTE 331
            RYGASLR+ ++K+EV QHS+Y C FCG+  VKR A GIW C  K C K  AGGA+T+ TA+A + RSTIRRLRE  E
Sbjct:   17 RYGASLRRDVRKIEVQQHSRYQCPFCGRLTVKRTAAGIWKCSGKGCSKTLAGGAWTVTTAAATSARSTIRRLREMVE 93          

HSP 2 Score: 23.0978 bits (48), Expect = 1.883e-21
Identity = 8/11 (72.73%), Postives = 9/11 (81.82%), Query Frame = 1
Query:   70 TKKAGIVGKYG 102
            TKK G+ GKYG
Sbjct:    5 TKKVGVTGKYG 15          
BLAST of BQ623203 vs. ExPASy Swiss-Prot
Match: RL43A_SCHPO (60S ribosomal protein L43-A OS=Schizosaccharomyces pombe GN=rpl43a PE=2 SV=1)

HSP 1 Score: 100.138 bits (248), Expect = 1.883e-21
Identity = 48/77 (62.34%), Postives = 58/77 (75.32%), Query Frame = 2
Query:  107 RYGASLRKQIKKMEVSQHSKYFCEFCGKYAVKRKAVGIWGC--KDCGKVKAGGAYTLNTASAVTVRSTIRRLREQTE 331
            RYGASLR+ ++K+EV QHS+Y C FCG+  VKR A GIW C  K C KV AGGA+T+ TA+A + RSTIRRLRE  E
Sbjct:   17 RYGASLRRDVRKIEVQQHSRYQCPFCGRNTVKRTAAGIWCCNGKGCKKVLAGGAWTVTTAAATSARSTIRRLREMVE 93          

HSP 2 Score: 23.0978 bits (48), Expect = 1.883e-21
Identity = 8/11 (72.73%), Postives = 9/11 (81.82%), Query Frame = 1
Query:   70 TKKAGIVGKYG 102
            TKK G+ GKYG
Sbjct:    5 TKKVGVTGKYG 15          
BLAST of BQ623203 vs. ExPASy Swiss-Prot
Match: RL37L_HUMAN (Putative 60S ribosomal protein L37a-like OS=Homo sapiens GN=RPL37L PE=5 SV=2)

HSP 1 Score: 86.6557 bits (213), Expect = 7.637e-17
Identity = 41/71 (57.75%), Postives = 52/71 (73.24%), Query Frame = 2
Query:  110 YGASLRKQIKKMEVSQHSKYFCEFCGKYAVKRKAVGIWGCKDCGKVKAGGAYTLNTASAVTVRSTIRRLRE 322
            +GASL K +K++E+SQH+KY C FCGK  +KR+AV I  C  C K  AG A+T NT SAV V+S IRRL+E
Sbjct:   19 HGASLWKMVKEIEISQHTKYTCSFCGKTKMKRRAVKIRHCNSCMKTVAGSAWTYNTTSAVMVKSAIRRLKE 89          
The following BLAST results are available for this feature:
BLAST of BQ623203 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 31
Match NameE-valueIdentityDescription
RL37A_SCHMA1.995e-2465.7960S ribosomal protein L37a (Fragment) OS=Schistoso... [more]
RL37A_OSTOS1.995e-2464.0060S ribosomal protein L37a OS=Ostertagia ostertagi... [more]
RL43_YEAST3.379e-2464.4760S ribosomal protein L43 OS=Saccharomyces cerevis... [more]
RL43_CANGA4.399e-2463.1660S ribosomal protein L43 OS=Candida glabrata GN=R... [more]
RL37A_DROME1.262e-2361.3360S ribosomal protein L37a OS=Drosophila melanogas... [more]
RL37A_MYXGL1.437e-2366.6760S ribosomal protein L37a (Fragment) OS=Myxine gl... [more]
RL37A_PLAF71.112e-2161.3360S ribosomal protein L37a OS=Plasmodium falciparu... [more]
RL43B_SCHPO1.883e-2161.0460S ribosomal protein L43-B OS=Schizosaccharomyces... [more]
RL43A_SCHPO1.883e-2162.3460S ribosomal protein L43-A OS=Schizosaccharomyces... [more]
RL37L_HUMAN7.637e-1757.75Putative 60S ribosomal protein L37a-like OS=Homo s... [more]

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Properties
Property NameValue
Genbank descriptionUSDA-FP_00294 Ridge pineapple sweet orange entire seedling Citrus sinensis cDNA clone USDA-FP_00294 5, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>BQ623203 ID=BQ623203; Name=BQ623203; organism=Citrus sinensis; type=EST; length=530bp
CGTCTCAAACAGCCGCTGCTTGTTGAAGAGCTACAGACCTTCGCTCCAAC
GCCACAATGACCAAGCTGTACGAAGAAGGCTGGAATCGTTGGAAAGTATG
GTACCCCGTTATGGTGCCAGTTTGAGGAAGCAAATTAAGAAGATGGAGGT
TAGTCAGCATAGCAAATATTTCTGCGAATTTTGCGGGAAGTATGCGGTGA
AGAGGAAAGCTGTTGGCATTTGGGGCTGCAAGGACTGTGGGAAAGTCAAG
GCAGGCGGTGCCTACACTTTGAACACTGCTAGTGCTGTGACTGTGAGGAG
CACAATCCGTAGGTTGAGGGAGCAAACTGAAAGCTGAGCTTGCCACCATT
GGCTTACTCCCGTGTCTTAGGTCGTTTGATCTTTAGTTTCGGATACAACC
TTAAATCATTTTTGATGTTGCTTTATTTCTAGATGCAAAACAATTGGTTG
TTGGAACATGAAACTTTTGGCTGTGTTTTGACTCTTGAGATGTTCATTCG
CTATTTTTCCTATGAAATTATGTTATCTAG
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