BQ623203

Overview
NameBQ623203
Unique NameBQ623203
TypeEST
OrganismCitrus sinensis (Sweet orange)
Sequence length530
Libraries
Library NameType
Ridge pineapple sweet orange entire seedlingcdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Alignments
Feature NameTypeLocationAnalysis
Csv1_Contig5593 contig Csv1_Contig5593:28..555. BLAST: Citrus Unigene V1 Contigs to Prunus persica proteins V1
Homology
[Close]
BLAST of BQ623203 vs. ExPASy Swiss-Prot
Match: RL37A_METJA (50S ribosomal protein L37Ae OS=Methanocaldococcus jannaschii GN=rpl37ae PE=3 SV=1)

HSP 1 Score: 67.0106 bits (162), Expect = 6.262e-11
Identity = 31/76 (40.79%), Postives = 42/76 (55.26%), Query Frame = 2 
Query:  104 PRYGASLRKQIKKMEVSQHSKYFCEFCGKYAVKRKAVGIWGCKDCGKVKAGGAYTLNTASAVTVRSTIRRLREQTE 331
            PRYG  +R +++ +E+    KY C  CG   +KR +  IW C  CG   AGGAYT  T +   V   IRR+ E+ E
Sbjct:   16 PRYGLKIRVRVRDVEIKAKKKYKCPVCGFPKLKRASTSIWVCGKCGAKIAGGAYTPETGAGKAVMKAIRRIVERKE 91
The following BLAST results are available for this feature:
BLAST of BQ623203 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 31
Match NameE-valueIdentityDescription
RL37A_METJA6.262e-1140.7950S ribosomal protein L37Ae OS=Methanocaldococcus ... [more]

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Properties
Property NameValue
Genbank descriptionUSDA-FP_00294 Ridge pineapple sweet orange entire seedling Citrus sinensis cDNA clone USDA-FP_00294 5, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>BQ623203 ID=BQ623203; Name=BQ623203; organism=Citrus sinensis; type=EST; length=530bp
CGTCTCAAACAGCCGCTGCTTGTTGAAGAGCTACAGACCTTCGCTCCAAC
GCCACAATGACCAAGCTGTACGAAGAAGGCTGGAATCGTTGGAAAGTATG
GTACCCCGTTATGGTGCCAGTTTGAGGAAGCAAATTAAGAAGATGGAGGT
TAGTCAGCATAGCAAATATTTCTGCGAATTTTGCGGGAAGTATGCGGTGA
AGAGGAAAGCTGTTGGCATTTGGGGCTGCAAGGACTGTGGGAAAGTCAAG
GCAGGCGGTGCCTACACTTTGAACACTGCTAGTGCTGTGACTGTGAGGAG
CACAATCCGTAGGTTGAGGGAGCAAACTGAAAGCTGAGCTTGCCACCATT
GGCTTACTCCCGTGTCTTAGGTCGTTTGATCTTTAGTTTCGGATACAACC
TTAAATCATTTTTGATGTTGCTTTATTTCTAGATGCAAAACAATTGGTTG
TTGGAACATGAAACTTTTGGCTGTGTTTTGACTCTTGAGATGTTCATTCG
CTATTTTTCCTATGAAATTATGTTATCTAG
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