BQ623236

Overview
NameBQ623236
Unique NameBQ623236
TypeEST
OrganismCitrus sinensis (Sweet orange)
Sequence length353
Libraries
Library NameType
Ridge pineapple sweet orange entire seedlingcdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Alignments
Feature NameTypeLocationAnalysis
Csv1_Contig9540 contig Csv1_Contig9540:656..1008. BLAST: Citrus Unigene V1 Contigs to Prunus persica proteins V1
Homology
BLAST of BQ623236 vs. ExPASy Swiss-Prot
Match: CB23_ORYSI (Chlorophyll a-b binding protein, chloroplastic OS=Oryza sativa subsp. indica GN=OsI_012078 PE=2 SV=1)

HSP 1 Score: 141.739 bits (356), Expect = 1.087e-33
Identity = 66/73 (90.41%), Postives = 70/73 (95.89%), Query Frame = 1
Query:   16 AFDPLGLADDPEAFAELKVKEIKNGRLAMFSMFGFFVQAIVTGKGPLENLADHLADPVNNNAWAYATNFVPGK 234
            AFDPLGLADDP+ FAELKVKE+KNGRLAMFSMFGFFVQAIVTGKGP+ENL DH+ADPV NNAWAYATNFVPGK
Sbjct:  191 AFDPLGLADDPDTFAELKVKELKNGRLAMFSMFGFFVQAIVTGKGPIENLFDHVADPVANNAWAYATNFVPGK 263          
BLAST of BQ623236 vs. ExPASy Swiss-Prot
Match: CB22_SOYBN (Chlorophyll a-b binding protein 2, chloroplastic OS=Glycine max GN=CAB2 PE=3 SV=1)

HSP 1 Score: 141.739 bits (356), Expect = 1.087e-33
Identity = 67/73 (91.78%), Postives = 69/73 (94.52%), Query Frame = 1
Query:   16 AFDPLGLADDPEAFAELKVKEIKNGRLAMFSMFGFFVQAIVTGKGPLENLADHLADPVNNNAWAYATNFVPGK 234
            +FDPLGLADDPEA AELKVKE+KNGRLAMFSMFGFFVQAIVTGKGPLENLADHLADPVNNNAWAYAT   PGK
Sbjct:  184 SFDPLGLADDPEALAELKVKELKNGRLAMFSMFGFFVQAIVTGKGPLENLADHLADPVNNNAWAYATKLCPGK 256          
BLAST of BQ623236 vs. ExPASy Swiss-Prot
Match: CB22_PETSP (Chlorophyll a-b binding protein 22L, chloroplastic OS=Petunia sp. GN=CAB22L PE=3 SV=1)

HSP 1 Score: 141.739 bits (356), Expect = 1.087e-33
Identity = 66/73 (90.41%), Postives = 70/73 (95.89%), Query Frame = 1
Query:   16 AFDPLGLADDPEAFAELKVKEIKNGRLAMFSMFGFFVQAIVTGKGPLENLADHLADPVNNNAWAYATNFVPGK 234
            +FDPLGLA+DPEAFAELKVKE KNGRLAMFSMFGFF+QAIVTGKGPLENLADHL DPVNNNAW+YATNFVP K
Sbjct:  195 SFDPLGLAEDPEAFAELKVKETKNGRLAMFSMFGFFIQAIVTGKGPLENLADHLVDPVNNNAWSYATNFVPRK 267          
BLAST of BQ623236 vs. ExPASy Swiss-Prot
Match: CB21_RAPSA (Chlorophyll a-b binding of LHCII type 1 protein (Fragment) OS=Raphanus sativus PE=2 SV=1)

HSP 1 Score: 140.584 bits (353), Expect = 2.421e-33
Identity = 67/73 (91.78%), Postives = 69/73 (94.52%), Query Frame = 1
Query:   16 AFDPLGLADDPEAFAELKVKEIKNGRLAMFSMFGFFVQAIVTGKGPLENLADHLADPVNNNAWAYATNFVPGK 234
            +FDPL    DPEAFAELKVKEIKNGRLAMFSMFGFFVQAIVTGKGPLENLADHLADPVNNNAWA+ATNFVPGK
Sbjct:   52 SFDPLASLTDPEAFAELKVKEIKNGRLAMFSMFGFFVQAIVTGKGPLENLADHLADPVNNNAWAFATNFVPGK 124          
BLAST of BQ623236 vs. ExPASy Swiss-Prot
Match: CB21_WHEAT (Chlorophyll a-b binding protein, chloroplastic OS=Triticum aestivum GN=WHAB1.6 PE=3 SV=1)

HSP 1 Score: 137.887 bits (346), Expect = 1.569e-32
Identity = 65/73 (89.04%), Postives = 70/73 (95.89%), Query Frame = 1
Query:   16 AFDPLGLADDPEAFAELKVKEIKNGRLAMFSMFGFFVQAIVTGKGPLENLADHLADPVNNNAWAYATNFVPGK 234
            +FDPLGLA+ P+AFAELKVKEIKNGRLAMFSMFGFFVQAIVTGKGPLE+LADH+ADPVNNNAW  ATNFVPGK
Sbjct:  194 SFDPLGLAERPQAFAELKVKEIKNGRLAMFSMFGFFVQAIVTGKGPLEDLADHIADPVNNNAWLIATNFVPGK 266          
BLAST of BQ623236 vs. ExPASy Swiss-Prot
Match: CB215_PEA (Chlorophyll a-b binding protein 215, chloroplastic OS=Pisum sativum GN=CAB215 PE=1 SV=1)

HSP 1 Score: 137.887 bits (346), Expect = 1.569e-32
Identity = 63/73 (86.30%), Postives = 71/73 (97.26%), Query Frame = 1
Query:   16 AFDPLGLADDPEAFAELKVKEIKNGRLAMFSMFGFFVQAIVTGKGPLENLADHLADPVNNNAWAYATNFVPGK 234
            AFDPLGLADDP++FAELKVKE+KNGRLAMFSMFGFFVQAIVTGKGP++NL DH+ADPV NNAWA+ATNFVPG+
Sbjct:  193 AFDPLGLADDPDSFAELKVKELKNGRLAMFSMFGFFVQAIVTGKGPIQNLYDHVADPVANNAWAFATNFVPGQ 265          
BLAST of BQ623236 vs. ExPASy Swiss-Prot
Match: CB23_SOLLC (Chlorophyll a-b binding protein 13, chloroplastic OS=Solanum lycopersicum GN=CAB13 PE=1 SV=1)

HSP 1 Score: 132.109 bits (331), Expect = 8.611e-31
Identity = 63/71 (88.73%), Postives = 64/71 (90.14%), Query Frame = 1
Query:   19 FDPLGLADDPEAFAELKVKEIKNGRLAMFSMFGFFVQAIVTGKGPLENLADHLADPVNNNAWAYATNFVPG 231
            FDPLGLADDP  FAELKVKEIKNGRLAMFSMFGFFVQAIVTGKGPLENL DHL +PV NNAW YAT FVPG
Sbjct:  194 FDPLGLADDPTTFAELKVKEIKNGRLAMFSMFGFFVQAIVTGKGPLENLLDHLDNPVANNAWVYATKFVPG 264          
BLAST of BQ623236 vs. ExPASy Swiss-Prot
Match: CB2_PHYPA (Chlorophyll a-b binding protein, chloroplastic OS=Physcomitrella patens PE=3 SV=1)

HSP 1 Score: 131.339 bits (329), Expect = 1.469e-30
Identity = 63/72 (87.50%), Postives = 65/72 (90.28%), Query Frame = 1
Query:   16 AFDPLGLADDPEAFAELKVKEIKNGRLAMFSMFGFFVQAIVTGKGPLENLADHLADPVNNNAWAYATNFVPG 231
            +FDPLGLADDP+ FAELKVKEIKNGRLAMFSMFGFFVQAIVTGKGPLENL DHLADPV NNAWAYA    PG
Sbjct:  196 SFDPLGLADDPDTFAELKVKEIKNGRLAMFSMFGFFVQAIVTGKGPLENLNDHLADPVANNAWAYAPTSPPG 267          
BLAST of BQ623236 vs. ExPASy Swiss-Prot
Match: CB23_HORVU (Chlorophyll a-b binding protein of LHCII type III, chloroplastic OS=Hordeum vulgare GN=LHBC PE=2 SV=1)

HSP 1 Score: 130.183 bits (326), Expect = 3.272e-30
Identity = 62/71 (87.32%), Postives = 63/71 (88.73%), Query Frame = 1
Query:   19 FDPLGLADDPEAFAELKVKEIKNGRLAMFSMFGFFVQAIVTGKGPLENLADHLADPVNNNAWAYATNFVPG 231
            FDPLGLADDP  FAELKVKEIKNGRLAMFSMFGFFVQAIVTGKGPLENL DHL DPV NNAW +AT F PG
Sbjct:  197 FDPLGLADDPVTFAELKVKEIKNGRLAMFSMFGFFVQAIVTGKGPLENLFDHLDDPVANNAWVFATKFAPG 267          
BLAST of BQ623236 vs. ExPASy Swiss-Prot
Match: CB2_DUNSA (Chlorophyll a-b binding protein of LHCII type I, chloroplastic OS=Dunaliella salina PE=2 SV=1)

HSP 1 Score: 124.02 bits (310), Expect = 2.345e-28
Identity = 58/71 (81.69%), Postives = 63/71 (88.73%), Query Frame = 1
Query:   16 AFDPLGLADDPEAFAELKVKEIKNGRLAMFSMFGFFVQAIVTGKGPLENLADHLADPVNNNAWAYATNFVP 228
            AFDPLGLADDP+ FAELKVKEIKNGRLAMF+  GFFVQAIVTGKGP+ENL DHLA+P  NNA+AYAT F P
Sbjct:  202 AFDPLGLADDPDTFAELKVKEIKNGRLAMFACLGFFVQAIVTGKGPIENLTDHLANPAENNAFAYATKFTP 272          
The following BLAST results are available for this feature:
BLAST of BQ623236 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 72
Match NameE-valueIdentityDescription
CB23_ORYSI1.087e-3390.41Chlorophyll a-b binding protein, chloroplastic OS=... [more]
CB22_SOYBN1.087e-3391.78Chlorophyll a-b binding protein 2, chloroplastic O... [more]
CB22_PETSP1.087e-3390.41Chlorophyll a-b binding protein 22L, chloroplastic... [more]
CB21_RAPSA2.421e-3391.78Chlorophyll a-b binding of LHCII type 1 protein (F... [more]
CB21_WHEAT1.569e-3289.04Chlorophyll a-b binding protein, chloroplastic OS=... [more]
CB215_PEA1.569e-3286.30Chlorophyll a-b binding protein 215, chloroplastic... [more]
CB23_SOLLC8.611e-3188.73Chlorophyll a-b binding protein 13, chloroplastic ... [more]
CB2_PHYPA1.469e-3087.50Chlorophyll a-b binding protein, chloroplastic OS=... [more]
CB23_HORVU3.272e-3087.32Chlorophyll a-b binding protein of LHCII type III,... [more]
CB2_DUNSA2.345e-2881.69Chlorophyll a-b binding protein of LHCII type I, c... [more]

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Properties
Property NameValue
Genbank descriptionUSDA-FP_00327 Ridge pineapple sweet orange entire seedling Citrus sinensis cDNA clone USDA-FP_00327 5, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>BQ623236 ID=BQ623236; Name=BQ623236; organism=Citrus sinensis; type=EST; length=353bp
TGTACCCAGGTGGCAGCGTTTGATCCATTGGGTTTGGCTGATGACCCGGA
GGCTTTTGCTGAGCTCAAGGTTAAGGAAATCAAGAATGGAAGGTTGGCTA
TGTTCTCCATGTTTGGTTTCTTCGTTCAGGCCATTGTCACCGGCAAGGGA
CCGTTAGAGAACTTGGCCGACCACTTGGCTGACCCTGTCAATAACAATGC
CTGGGCCTACGCCACCAACTTTGTCCCCGGAAAGTGAGCTTCGGTTGATA
AGAGTTTTTCTCTTTTCGGTTTCTTGGATATCATGTAAATCTGTTGTGAG
CTCATGGAAGCTTTAATTTGAGTTGTGATTATTTATAAAATGCTTCAATT
TGA
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