BQ623246

Overview
NameBQ623246
Unique NameBQ623246
TypeEST
OrganismCitrus sinensis (Sweet orange)
Sequence length572
Libraries
Library NameType
Ridge pineapple sweet orange entire seedlingcdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Alignments
Feature NameTypeLocationAnalysis
Csv1_Contig6152 contig Csv1_Contig6152:392..962. BLAST: Citrus Unigene V1 Contigs to Prunus persica proteins V1
Homology
BLAST of BQ623246 vs. ExPASy Swiss-Prot
Match: VPS29_SCHPO (Vacuolar protein sorting-associated protein 29 OS=Schizosaccharomyces pombe GN=vps29 PE=2 SV=1)

HSP 1 Score: 123.635 bits (309), Expect = 6.704e-28
Identity = 58/137 (42.34%), Postives = 92/137 (67.15%), Query Frame = 1
Query:    1 LKSLCPDLHVTRGEYDEDSRYPETKTLTIGQFKLGICHGHQVIPWGDLDSLAMLQRQLDVDILVTGHTHQFKAYKHEGGVVINPGSATGAYSSFTFD----VNPSFVLMDIDGLRVVVYVYELIDGEVKVDKIDFKK 399
            LK +C DL + +G +D  S+ P    +T+G FK+G  +GH V+P    ++L++L R++D DIL+ G TH+F AY+ +G   +NPGSATGA +    +    + PSFVLMD+ G  +++YVY + DGEV+V+K+ ++K
Sbjct:   49 LKHVCSDLKLVKGAFDISSKAPIAGKITLGSFKIGYTNGHLVVPQDSPEALSILAREMDADILLFGGTHKFAAYELDGCFFVNPGSATGAPNVSAVEDDEKIVPSFVLMDVQGAVLILYVYRIFDGEVRVEKMQYRK 185          
BLAST of BQ623246 vs. ExPASy Swiss-Prot
Match: PEP11_YEAST (Vacuolar protein sorting-associated protein 29 OS=Saccharomyces cerevisiae GN=VPS29 PE=1 SV=1)

HSP 1 Score: 71.2478 bits (173), Expect = 3.949e-12
Identity = 44/115 (38.26%), Postives = 60/115 (52.17%), Query Frame = 1
Query:   19 DLHVTRGEYD-------------EDSR----YPETKTLTIGQFKLGICHGHQVIPWGDLDSLAMLQRQLDVDILVTGHTHQFKAYKHEGGVVINPGSATGAYSS---FTFDVNPS 303
            ++ + RGE+D             ++SR     P    +  G  K+G C G+ V+P  D  SL  L RQLDVDIL+ G TH  +AY  EG   +NPGS TGA+++     FDV  S
Sbjct:   57 NITIVRGEFDNGHLPSTKKDKASDNSRPMEEIPMNSIIRQGALKIGCCSGYTVVPKNDPLSLLALARQLDVDILLWGGTHNVEAYTLEGKFFVNPGSCTGAFNTDWPIVFDVEDS 171          
The following BLAST results are available for this feature:
BLAST of BQ623246 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 12
Match NameE-valueIdentityDescription
VPS29_SCHPO6.704e-2842.34Vacuolar protein sorting-associated protein 29 OS=... [more]
PEP11_YEAST3.949e-1238.26Vacuolar protein sorting-associated protein 29 OS=... [more]

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Properties
Property NameValue
Genbank descriptionUSDA-FP_00337 Ridge pineapple sweet orange entire seedling Citrus sinensis cDNA clone USDA-FP_00337 5, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>BQ623246 ID=BQ623246; Name=BQ623246; organism=Citrus sinensis; type=EST; length=572bp
TTGAAGAGTCTTTGTCCTGATTTGCATGTCACTCGAGGTGAATATGATGA
AGATTCACGTTATCCCGAAACTAAGACACTCACCATTGGGCAATTCAAGC
TTGGAATCTGCCATGGTCATCAGGTTATTCCATGGGGGGACTTGGATTCG
CTGGCAATGCTGCAAAGGCAGTTGGATGTGGACATCCTTGTGACTGGTCA
TACCCATCAGTTCAAAGCCTACAAACATGAAGGTGGTGTTGTTATAAATC
CTGGCTCTGCAACTGGTGCCTACAGTAGCTTTACATTTGATGTAAACCCA
AGCTTTGTACTCATGGACATTGATGGTCTGCGAGTTGTGGTTTATGTATA
CGAATTAATTGACGGTGAAGTAAAGGTTGACAAAATTGATTTTAAGAAGA
CTGCCACTACTCGATTAGCACACTGATTCAGCACACTGCATCCTTGACTT
TGTTGGACTAATTGCTGAGAACTTTTATGTAATGCCAATAAGTTGTTCAT
GTGTAAATTCTCTTTAACAGTTTTGCTGGATTCTGGAGATCATGTATTGA
AACGAATAAATCGAATATTTAC
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