BQ623251

Overview
NameBQ623251
Unique NameBQ623251
TypeEST
OrganismCitrus sinensis (Sweet orange)
Sequence length546
Libraries
Library NameType
Ridge pineapple sweet orange entire seedlingcdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Homology
BLAST of BQ623251 vs. ExPASy Swiss-Prot
Match: PP425_ARATH (Pentatricopeptide repeat-containing protein At5g48910 OS=Arabidopsis thaliana GN=PCMP-H38 PE=2 SV=1)

HSP 1 Score: 99.3673 bits (246), Expect = 1.202e-20
Identity = 55/168 (32.74%), Postives = 89/168 (52.98%), Query Frame = 2
Query:   38 RVMFDAIAPKNRDVATWTVMIGSYSQNGGANDALALFPQMFQQDKLVKPNAFTXXXXXXXXXXXXXXXFGRQIHAYVLRNQYEMLIPFVANCLIDMYSRSGDIDTARVVFDNLKQRNVVSWTSLMTGYGMHGLGDKAHWAFDQMRKEGLAPDGVTFLGLLYACSHSGM 541
            R++FD +  + R V +W  MI  YS NG   DA+ +F +M + D  ++PN  T                G  +H Y   +    +   + + LIDMYS+ G I+ A  VF+ L + NV++W++++ G+ +HG    A   F +MR+ G+ P  V ++ LL ACSH G+
Sbjct:  228 RMLFDKM--RQRSVVSWNTMISGYSLNGFFKDAVEVFREMKKGD--IRPNYVTLVSVLPAISRLGSLELGEWLHLYA-EDSGIRIDDVLGSALIDMYSKCGIIEKAIHVFERLPRENVITWSAMINGFAIHGQAGDAIDCFCKMRQAGVRPSDVAYINLLTACSHGGL 390          
BLAST of BQ623251 vs. ExPASy Swiss-Prot
Match: PP313_ARATH (Pentatricopeptide repeat-containing protein At4g15720 OS=Arabidopsis thaliana GN=PCMP-H1 PE=2 SV=1)

HSP 1 Score: 98.2117 bits (243), Expect = 1.247e-20
Identity = 56/168 (33.33%), Postives = 88/168 (52.38%), Query Frame = 2
Query:   38 RVMFDAIAPKNRDVATWTVMIGSYSQNGGANDALALFPQMFQQDKLVKPNAFTXXXXXXXXXXXXXXXFGRQIHAYVLRNQYEMLIPFVANCLIDMYSRSGDIDTARVVFDNLKQRNVVSWTSLMTGYGMHGLGDKAHWAFDQMRKEGLAPDGVTFLGLLYACSHSGM 541
            R +FD++    R+V +WT MI +Y+QN   ++A+ LF          + N F                +G+  H  V R  YE     VA  L+DMY++ G +  A  +F  ++  +V+S+TS++     HGLG+ A   FD+M    + P+ VT LG+L+ACSHSG+
Sbjct:  186 RRVFDSMIGYGRNVVSWTSMITAYAQNARGHEAIELFRSFNAALTSDRANQFMLASVISACSSLGRLQWGKVAHGLVTRGGYESNT-VVATSLLDMYAKCGSLSCAEKIFLRIRCHSVISYTSMIMAKAKHGLGEAAVKLFDEMVAGRINPNYVTLLGVLHACSHSGL 352          

HSP 2 Score: 20.7866 bits (42), Expect = 1.247e-20
Identity = 7/12 (58.33%), Postives = 8/12 (66.67%), Query Frame = 1
Query:    1 DMYAKCKSVDVA 36
            DMY KC  V+ A
Sbjct:  174 DMYGKCNDVETA 185          

HSP 3 Score: 78.1814 bits (191), Expect = 2.867e-14
Identity = 48/139 (34.53%), Postives = 75/139 (53.96%), Query Frame = 2
Query:   38 RVMFDAIAPKNRDVATWTVMIGSYSQNGGANDALALFPQMFQQDKLVKPNAFTXXXXXXXXXXXXXXXFGRQIHAYVLRNQYEMLIPFVANCLIDMYSRSGDIDTARVVFDNL--KQRNVVSWTSLMTGYGMHGLGDKA 448
            R +FD +   N  V +WT +I  Y+  G   +AL++F +M  +D+ V PN +T                G+ IHA +  +     I  V++ L+DMY +  D++TAR VFD++    RNVVSWTS++T Y  +  G +A
Sbjct:   84 RKLFDEMCEPN--VVSWTSVISGYNDMGKPQNALSMFQKM-HEDRPVPPNEYTFASVFKACSALAESRIGKNIHARLEISGLRRNI-VVSSSLVDMYGKCNDVETARRVFDSMIGYGRNVVSWTSMITAYAQNARGHEA 218          
BLAST of BQ623251 vs. ExPASy Swiss-Prot
Match: PPR10_ARATH (Pentatricopeptide repeat-containing protein At1g04840 OS=Arabidopsis thaliana GN=PCMP-H64 PE=2 SV=1)

HSP 1 Score: 98.9821 bits (245), Expect = 1.569e-20
Identity = 54/164 (32.93%), Postives = 89/164 (54.27%), Query Frame = 2
Query:   44 MFDAIAPKNRDVATWTVMIGSYSQNGGANDALALFPQMFQQDKLVKPNAFTXXXXXXXXXXXXXXXFGRQIHAYVLRNQYEMLIPFVANCLIDMYSRSGDIDTARVVFDNLKQRNVVSWTSLMTGYGMHGLGDKAHWAFDQMRKEGLAPDGVTFLGLLYACSHS 535
            +F+ +  KN  V +WT +I  +SQ G    A++ + +M +  K +KPN +T                G +IH Y+L N  + L   +   L+DMY++ G++D A  VF N+  ++++SWT+++ G+ +HG   +A   F QM   G  PD V FL +L AC +S
Sbjct:  249 LFELMPEKN--VVSWTTLINGFSQTGDYETAISTYFEMLE--KGLKPNEYTIAAVLSACSKSGALGSGIRIHGYILDNGIK-LDRAIGTALVDMYAKCGELDCAATVFSNMNHKDILSWTAMIQGWAVHGRFHQAIQCFRQMMYSGEKPDEVVFLAVLTACLNS 407          
BLAST of BQ623251 vs. ExPASy Swiss-Prot
Match: PP343_ARATH (Pentatricopeptide repeat-containing protein At4g31070, mitochondrial OS=Arabidopsis thaliana GN=PCMP-E7 PE=2 SV=2)

HSP 1 Score: 98.9821 bits (245), Expect = 1.569e-20
Identity = 55/168 (32.74%), Postives = 91/168 (54.17%), Query Frame = 2
Query:   38 RVMFDAIAPKNRDVATWTVMIGSYSQNGGANDALALFPQMFQQDKLVKPNAFTXXXXXXXXXXXXXXXFGRQIHAYVLRNQYEMLIPFVANCLIDMYSRSGDIDTARVVFDNLKQRNVVSWTSLMTGYGMHGLGDKAHWAFDQMRKEGLAPDGVTFLGLLYACSHSGM 541
            RV+F+    K RDV  W+ MI  Y++ G  ++ + L  QM ++   ++ N+ T               F   +H+ +L+  +   I  + N LIDMY++ G +  AR VF  L ++++VSW+S++  YG+HG G +A   F  M K G   D + FL +L AC+H+G+
Sbjct:  318 RVLFET--SKVRDVVMWSSMISGYAETGDCSEVMNLLNQMRKEG--IEANSVTLLAIVSACTNSTLLSFASTVHSQILKCGFMSHI-LLGNALIDMYAKCGSLSAAREVFYELTEKDLVSWSSMINAYGLHGHGSEALEIFKGMIKGGHEVDDMAFLAILSACNHAGL 480          

HSP 2 Score: 67.0106 bits (162), Expect = 6.609e-11
Identity = 47/165 (28.48%), Postives = 79/165 (47.88%), Query Frame = 2
Query:   44 MFDAIAPKNRDVATWTVMIGSYSQNGGANDALALFPQMFQQDKLVKPNAFTXXXXXXXXXXXXXXX-FGRQIHAYVLRNQYEMLIPFVANCLIDMYSRSGDIDTARVVFDNLKQRNVVSWTSLMTGYGMHGLGDKAHWAFDQMRKEGLAPDGVTFLGLLYACSHS 535
            +FD +  KN    +WT MI     N      + LF  M +++  ++PN  T                  ++IH +  R+         A   + MY R G++  +RV+F+  K R+VV W+S+++GY   G   +     +QMRKEG+  + VT L ++ AC++S
Sbjct:  218 VFDQMEVKNE--VSWTAMISGCVANQNYEMGVDLFRAMQREN--LRPNRVTLLSVLPACVELNYGSSLVKEIHGFSFRHGCHADERLTA-AFMTMYCRCGNVSLSRVLFETSKVRDVVMWSSMISGYAETGDCSEVMNLLNQMRKEGIEANSVTLLAIVSACTNS 377          
BLAST of BQ623251 vs. ExPASy Swiss-Prot
Match: PP311_ARATH (Pentatricopeptide repeat-containing protein At4g14820 OS=Arabidopsis thaliana GN=PCMP-H3 PE=2 SV=1)

HSP 1 Score: 98.9821 bits (245), Expect = 1.569e-20
Identity = 55/168 (32.74%), Postives = 91/168 (54.17%), Query Frame = 2
Query:   38 RVMFDAIAPKNRDVATWTVMIGSYSQNGGANDALALFPQMFQQDKLVKPNAFTXXXXXXXXXXXXXXXFGRQIHAYVLRNQYEMLIPFVANCLIDMYSRSGDIDTARVVFDNLKQRNVVSWTSLMTGYGMHGLGDKAHWAFDQMRKEGLAPDGVTFLGLLYACSHSGM 541
            +V+FD    K  D+  WT MI +Y ++    +AL +F +M      +KP+  +                 + +H+ +  N  E  +  + N LI+MY++ G +D  R VF+ + +RNVVSW+S++    MHG    A   F +M++E + P+ VTF+G+LY CSHSG+
Sbjct:  298 QVIFDQTEKK--DLVCWTTMISAYVESDYPQEALRVFEEMCCSG--IKPDVVSMFSVISACANLGILDKAKWVHSCIHVNGLESELS-INNALINMYAKCGGLDATRDVFEKMPRRNVVSWSSMINALSMHGEASDALSLFARMKQENVEPNEVTFVGVLYGCSHSGL 460          
BLAST of BQ623251 vs. ExPASy Swiss-Prot
Match: PP260_ARATH (Pentatricopeptide repeat-containing protein At3g28660 OS=Arabidopsis thaliana GN=PCMP-E80 PE=2 SV=1)

HSP 1 Score: 98.9821 bits (245), Expect = 1.569e-20
Identity = 57/174 (32.76%), Postives = 93/174 (53.45%), Query Frame = 2
Query:   20 RVLMWHRVMFDAIAPKNRDVATWTVMIGSYSQNGGANDALALFPQMFQQDKLVKPNAFTXXXXXXXXXXXXXXXFGRQIHAYVLRNQYEMLIPFVANCLIDMYSRSGDIDTARVVFDNLKQRNVVSWTSLMTGYGMHGLGDKAHWAFDQM-RKEGLAPDGVTFLGLLYACSHSG 538
            ++L   R +FD I     DV  W V++  Y + G  ++ L +F +M  +   ++P+ F+                G+ IH +V + ++     FV   L+DMY++ G I+TA  VF+ L +RNV SW +L+ GY  +G   KA    D++ R++G+ PD V  LG+L AC+H G
Sbjct:  166 KLLFDARKVFDEIPQP--DVVKWDVLMNGYVRCGLGSEGLEVFKEMLVRG--IEPDEFSVTTALTACAQVGALAQGKWIHEFVKKKRWIESDVFVGTALVDMYAKCGCIETAVEVFEKLTRRNVFSWAALIGGYAAYGYAKKATTCLDRIEREDGIKPDSVVLLGVLAACAHGG 335          
BLAST of BQ623251 vs. ExPASy Swiss-Prot
Match: PP433_ARATH (Pentatricopeptide repeat-containing protein At5g56310 OS=Arabidopsis thaliana GN=PCMP-E13 PE=2 SV=1)

HSP 1 Score: 98.5969 bits (244), Expect = 2.050e-20
Identity = 53/156 (33.97%), Postives = 90/156 (57.69%), Query Frame = 2
Query:   71 RDVATWTVMIGSYSQNGGANDALALFPQMFQQDKLVKPNAFTXXXXXXXXXXXXXXXFGRQIHAYVLRNQYEMLIPFVANCLIDMYSRSGDIDTARVVFDNLKQRNVVSWTSLMTGYGMHGLGDKAHWAFDQMRKEGLAPDGVTFLGLLYACSHSG 538
            R+  +WT +I  Y+++G A++A+ +F +M  ++  V+P+  T                G +I +YV        +  + N +IDMY++SG+I  A  VF+ + +RNVV+WT+++ G   HG G +A   F++M K G+ P+ VTF+ +L ACSH G
Sbjct:  213 RNEVSWTCVISGYAKSGRASEAIEVFQRMLMEN--VEPDEVTLLAVLSACADLGSLELGERICSYVDHRGMNRAVS-LNNAVIDMYAKSGNITKALDVFECVNERNVVTWTTIIAGLATHGHGAEALAMFNRMVKAGVRPNDVTFIAILSACSHVG 365          
BLAST of BQ623251 vs. ExPASy Swiss-Prot
Match: PP398_ARATH (Pentatricopeptide repeat-containing protein At5g27110 OS=Arabidopsis thaliana GN=PCMP-E14 PE=2 SV=2)

HSP 1 Score: 98.5969 bits (244), Expect = 2.050e-20
Identity = 57/158 (36.08%), Postives = 89/158 (56.33%), Query Frame = 2
Query:   71 RDVA-TWTVMIGSYSQNGGANDALALFPQMFQQDKLVKPNAFTXXXXXXXXXXXXXXXFGRQIHAYVLRNQYEMLIPFVANCLIDMYSRSGDIDTARVVFDNLKQRNVVSWTSLMTGYGMHGLGDKAHWAFDQMRKEGLAPDGVTFLGLLYACSHSGM 541
            +DVA +W VMI SY   G    A+ ++ QM      VKP+  T                G+QIH  +  ++ E     + + L+DMYS+ G+   A  +F+++ +++VVSWT +++ YG HG   +A + FD+M+K GL PDGVT L +L AC H+G+
Sbjct:  372 KDVAESWNVMISSYISVGNWFKAVEVYDQMVSVG--VKPDVVTFTSVLPACSQLAALEKGKQIHLSISESRLET-DELLLSALLDMYSKCGNEKEAFRIFNSIPKKDVVSWTVMISAYGSHGQPREALYQFDEMQKFGLKPDGVTLLAVLSACGHAGL 526          

HSP 2 Score: 77.7962 bits (190), Expect = 3.744e-14
Identity = 46/155 (29.68%), Postives = 77/155 (49.68%), Query Frame = 2
Query:   71 RDVATWTVMIGSYSQNGGANDALALFPQMFQQDKLVKPNAFTXXXXXXXXXXXXXXXFGRQIHAYVLRNQYEMLIPFVANCLIDMYSRSGDIDTARVVFDNLKQRNVVSWTSLMTGYGMHGLGDKAHWAFDQMRKEGLAPDGVTFLGLLYACSHS 535
            RDVA+W  +I  + Q+G A  AL LF +M  +    +PN+ +                G++IH   ++  +E L  +V + L+DMY +   ++ AR VF  + ++++V+W S++ GY   G         ++M  EG  P   T   +L ACS S
Sbjct:  171 RDVASWNTVISCFYQSGEAEKALELFGRM--ESSGFEPNSVSLTVAISACSRLLWLERGKEIHRKCVKKGFE-LDEYVNSALVDMYGKCDCLEVAREVFQKMPRKSLVAWNSMIKGYVAKGDSKSCVEILNRMIIEGTRPSQTTLTSILMACSRS 322          

HSP 3 Score: 71.2478 bits (173), Expect = 3.504e-12
Identity = 42/152 (27.63%), Postives = 74/152 (48.68%), Query Frame = 2
Query:   74 DVATWTVMIGSYSQNGGANDALALFPQMFQQDKLVKPNAFTXXXXXXXXXXXXXXXFGRQIHAYVLRNQYEMLIPFVANCLIDMYSRSGDIDTARVVFDNLKQRNVVSWTSLMTGYGMHGLGDKAHWAFDQMRKEGLAPDGVTFLGLLYACS 529
            DV  W  ++  YS+N   +D L +F ++      V P++FT                GR IH  V+++ Y   +  VA+ L+ MY++    + +  VFD + +R+V SW ++++ +   G  +KA   F +M   G  P+ V+    + ACS
Sbjct:   70 DVYIWNSLMSGYSKNSMFHDTLEVFKRLLNCSICV-PDSFTFPNVIKAYGALGREFLGRMIHTLVVKSGYVCDV-VVASSLVGMYAKFNLFENSLQVFDEMPERDVASWNTVISCFYQSGEAEKALELFGRMESSGFEPNSVSLTVAISACS 219          
BLAST of BQ623251 vs. ExPASy Swiss-Prot
Match: PPR75_ARATH (Pentatricopeptide repeat-containing protein At1g50270 OS=Arabidopsis thaliana GN=PCMP-E42 PE=2 SV=1)

HSP 1 Score: 98.2117 bits (243), Expect = 2.677e-20
Identity = 53/158 (33.54%), Postives = 79/158 (50.00%), Query Frame = 2
Query:   65 KNRDVATWTVMIGSYSQNGGANDALALFPQMFQQDKLVKPNAFTXXXXXXXXXXXXXXXFGRQIHAYVLRNQYEMLIPFVANCLIDMYSRSGDIDTARVVFDNLKQRNVVSWTSLMTGYGMHGLGDKAHWAFDQMRKEGLAPDGVTFLGLLYACSHSG 538
            +++DV TWT MI  + +NG A++A+  F +M +    V  N  T               FGR +H   L         F+ + L+DMY +    D A+ VFD +  RNVV+WT+L+ GY      DK    F++M K  +AP+  T   +L AC+H G
Sbjct:  165 EDKDVVTWTAMIDGFVRNGSASEAMVYFVEMKKTG--VAANEMTVVSVLKAAGKVEDVRFGRSVHGLYLETGRVKCDVFIGSSLVDMYGKCSCYDDAQKVFDEMPSRNVVTWTALIAGYVQSRCFDKGMLVFEEMLKSDVAPNEKTLSSVLSACAHVG 320          

HSP 2 Score: 94.3597 bits (233), Expect = 3.865e-19
Identity = 49/158 (31.01%), Postives = 84/158 (53.16%), Query Frame = 2
Query:   68 NRDVATWTVMIGSYSQNGGANDALALFPQMFQQDKLVKPNAFTXXXXXXXXXXXXXXXFGRQIHAYVLRNQYEMLIPFVANCLIDMYSRSGDIDTARVVFDNLKQRNVVSWTSLMTGYGMHGLGDKAHWAFDQMRKEGLAPDGVTFLGLLYACSHSGM 541
            +R+V TWT +I  Y Q+   +  + +F +M + D  V PN  T                GR++H Y+++N  E+        LID+Y + G ++ A +VF+ L ++NV +WT+++ G+  HG    A   F  M    ++P+ VTF+ +L AC+H G+
Sbjct:  268 SRNVVTWTALIAGYVQSRCFDKGMLVFEEMLKSD--VAPNEKTLSSVLSACAHVGALHRGRRVHCYMIKNSIEINTT-AGTTLIDLYVKCGCLEEAILVFERLHEKNVYTWTAMINGFAAHGYARDAFDLFYTMLSSHVSPNEVTFMAVLSACAHGGL 422          
BLAST of BQ623251 vs. ExPASy Swiss-Prot
Match: PP315_ARATH (Pentatricopeptide repeat-containing protein At4g16470 OS=Arabidopsis thaliana GN=PCMP-E12 PE=2 SV=2)

HSP 1 Score: 98.2117 bits (243), Expect = 2.677e-20
Identity = 54/159 (33.96%), Postives = 86/159 (54.09%), Query Frame = 2
Query:   65 KNRDVATWTVMIGSYSQNGGANDALALFPQMFQQDKLVKPNAFTXXXXXXXXXXXXXXXFGRQIHAYVLRNQYEMLIPFVANCLIDMYSRSGDIDTARVVFDNLKQRNVVSWTSLMTGYGMHGLGDKAHWAFDQMRKEGLAPDGVTFLGLLYACSHSGM 541
            K RD+  W  MI  Y Q G   + L ++  M +Q+++V P+ +T                G++ HA +++   +  I  V + L+DMY +         VFD L  RNV++WTSL++GYG HG   +    F++M++EG  P+ VTFL +L AC+H G+
Sbjct:  170 KIRDLIPWNAMISGYVQKGLEQEGLFIYYDM-RQNRIV-PDQYTFASVFRACSALDRLEHGKRAHAVMIKRCIKSNI-IVDSALVDMYFKCSSFSDGHRVFDQLSTRNVITWTSLISGYGYHGKVSEVLKCFEKMKEEGCRPNPVTFLVVLTACNHGGL 325          
The following BLAST results are available for this feature:
BLAST of BQ623251 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 190
Match NameE-valueIdentityDescription
PP425_ARATH1.202e-2032.74Pentatricopeptide repeat-containing protein At5g48... [more]
PP313_ARATH1.247e-2033.33Pentatricopeptide repeat-containing protein At4g15... [more]
PPR10_ARATH1.569e-2032.93Pentatricopeptide repeat-containing protein At1g04... [more]
PP343_ARATH1.569e-2032.74Pentatricopeptide repeat-containing protein At4g31... [more]
PP311_ARATH1.569e-2032.74Pentatricopeptide repeat-containing protein At4g14... [more]
PP260_ARATH1.569e-2032.76Pentatricopeptide repeat-containing protein At3g28... [more]
PP433_ARATH2.050e-2033.97Pentatricopeptide repeat-containing protein At5g56... [more]
PP398_ARATH2.050e-2036.08Pentatricopeptide repeat-containing protein At5g27... [more]
PPR75_ARATH2.677e-2033.54Pentatricopeptide repeat-containing protein At1g50... [more]
PP315_ARATH2.677e-2033.96Pentatricopeptide repeat-containing protein At4g16... [more]

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Properties
Property NameValue
Genbank descriptionUSDA-FP_00342 Ridge pineapple sweet orange entire seedling Citrus sinensis cDNA clone USDA-FP_00342 5, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>BQ623251 ID=BQ623251; Name=BQ623251; organism=Citrus sinensis; type=EST; length=546bp
GACATGTACGCTAAGTGCAAGAGTGTTGATGTGGCACCGTGTTATGTTTG
ATGCAATTGCACCAAAAAACAGGGATGTTGCAACTTGGACAGTAATGATA
GGTAGTTATTCTCAGAATGGAGGAGCCAATGATGCCCTGGCACTTTTTCC
TCAGATGTTCCAGCAAGATAAACTTGTAAAGCCAAATGCTTTTACTTTAT
CTTGTGCTCTTATGGCTTGTGCTCGTTTGGCTGCACTGAGATTTGGTAGA
CAAATTCATGCATATGTGCTGCGGAATCAATATGAGATGTTGATTCCGTT
TGTGGCCAATTGCCTGATAGATATGTATTCACGATCAGGAGACATTGACA
CAGCTAGAGTTGTATTTGATAACTTGAAGCAAAGAAATGTTGTTTCCTGG
ACATCCTTGATGACAGGTTATGGCATGCACGGTCTTGGCGACAAAGCTCA
CTGGGCTTTTGATCAGATGAGGAAAGAAGGTCTAGCACCTGATGGTGTAA
CCTTCCTTGGTCTGCTCTATGCTTGCAGCCACTCAGGAATGGGTGA
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