BQ623251

Overview
NameBQ623251
Unique NameBQ623251
TypeEST
OrganismCitrus sinensis (Sweet orange)
Sequence length546
Libraries
Library NameType
Ridge pineapple sweet orange entire seedlingcdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Homology
BLAST of BQ623251 vs. ExPASy Swiss-Prot
Match: PP316_ARATH (Pentatricopeptide repeat-containing protein At4g16835, mitochondrial OS=Arabidopsis thaliana GN=DYW10 PE=2 SV=2)

HSP 1 Score: 94.7449 bits (234), Expect = 2.960e-19
Identity = 49/158 (31.01%), Postives = 85/158 (53.80%), Query Frame = 2
Query:   68 NRDVATWTVMIGSYSQNGGANDALALFPQMFQQDKLVKPNAFTXXXXXXXXXXXXXXXFGRQIHAYVLRNQYEMLIPFVANCLIDMYSRSGDIDTARVVFDNLKQRNVVSWTSLMTGYGMHGLGDKAHWAFDQMRKEGLAPDGVTFLGLLYACSHSGM 541
            N+++ TW  MI  Y +N    D L LF  M ++   ++PN+                  GRQIH  V ++     +  + + LI MY + G++  A  +F+ +K+++VV+W ++++GY  HG  DKA   F +M    + PD +TF+ +L AC+H+G+
Sbjct:  246 NKNLVTWNAMISGYVENSRPEDGLKLFRAMLEEG--IRPNSSGLSSALLGCSELSALQLGRQIHQIVSKSTLCNDVTALTS-LISMYCKCGELGDAWKLFEVMKKKDVVAWNAMISGYAQHGNADKALCLFREMIDNKIRPDWITFVAVLLACNHAGL 400          
BLAST of BQ623251 vs. ExPASy Swiss-Prot
Match: PP303_ARATH (Pentatricopeptide repeat-containing protein At4g04370 OS=Arabidopsis thaliana GN=PCMP-E99 PE=2 SV=1)

HSP 1 Score: 94.7449 bits (234), Expect = 2.960e-19
Identity = 53/157 (33.76%), Postives = 84/157 (53.50%), Query Frame = 2
Query:   71 RDVATWTVMIGSYSQNGGANDALALFPQMFQQDKLVKPNAFTXXXXXXXXXXXXXXXFGRQIHAYVLRNQYEMLIPFVANCLIDMYSRSGDIDTARVVFDNLKQRNVVSWTSLMTGYGMHGLGDKAHWAFDQMRKEGLAPDGVTFLGLLYACSHSGM 541
            RD+ +W  +I  Y+QN     AL LF +M +   + + ++FT                G+ IH  V+R+ +      V   L+DMYS+ G ++ A+  FD++  ++VVSW  L+ GYG HG GD A   + +    G+ P+ V FL +L +CSH+GM
Sbjct:  410 RDLVSWNAIISGYAQNVDLCKALLLFEEM-KFKTVQQVDSFTVVSLLQACSSAGALPVGKLIHCIVIRS-FIRPCSLVDTALVDMYSKCGYLEAAQRCFDSISWKDVVSWGILIAGYGFHGKGDIALEIYSEFLHSGMEPNHVIFLAVLSSCSHNGM 564          

HSP 2 Score: 85.5001 bits (210), Expect = 1.796e-16
Identity = 52/158 (32.91%), Postives = 81/158 (51.27%), Query Frame = 2
Query:   68 NRDVATWTVMIGSYSQNGGANDALALFPQMFQQDKLVKPNAFTXXXXXXXXXXXXXXXFGRQIHAYVLRNQYEMLIPFVANCLIDMYSRSGDIDTARVVFDNLKQRNVVSWTSLMTGYGMHGLGDKAHWAFDQMR-KEGLAPDGVTFLGLLYACSHSG 538
            N+DV  WTVMI    + G A  AL +F +M Q    +   A                  G  +H YVLR+ Y +  P + N LI MY++ G +D + V+F+ + +R++VSW ++++GY  +    KA   F++M+ K     D  T + LL ACS +G
Sbjct:  308 NKDVVCWTVMISGLMRLGRAEKALIVFSEMLQSGSDLSSEAIASVVASCAQLGSFD--LGASVHGYVLRHGYTLDTPAL-NSLITMYAKCGHLDKSLVIFERMNERDLVSWNAIISGYAQNVDLCKALLLFEEMKFKTVQQVDSFTVVSLLQACSSAG 462          
BLAST of BQ623251 vs. ExPASy Swiss-Prot
Match: PP237_ARATH (Pentatricopeptide repeat-containing protein At3g16610 OS=Arabidopsis thaliana GN=PCMP-E91 PE=2 SV=1)

HSP 1 Score: 94.3597 bits (233), Expect = 3.865e-19
Identity = 50/157 (31.85%), Postives = 86/157 (54.78%), Query Frame = 2
Query:   71 RDVATWTVMIGSYSQNGGANDALALFPQMFQQDKLVKPNAFTXXXXXXXXXXXXXXXFGRQIHAYVLRNQYEMLIPFVANCLIDMYSRSGDIDTARVVFDNLKQRNVVSWTSLMTGYGMHGLGDKAHWAFDQMRKEGLAPDGVTFLGLLYACSHSGM 541
            +DV ++  +I     N    ++  LF +M  +   ++P+  T                G   H Y + + Y +    + N L+DMY++ G +D A+ VFD + +R++VSW +++ G+G+HGLG +A   F+ M++ G+ PD VT L +L ACSHSG+
Sbjct:  372 KDVISYNSLITGCVVNCRPEESFRLFHEM--RTSGIRPDITTLLGVLTACSHLAALGHGSSCHGYCVVHGYAVNTS-ICNALMDMYTKCGKLDVAKRVFDTMHKRDIVSWNTMLFGFGIHGLGKEALSLFNSMQETGVNPDEVTLLAILSACSHSGL 525          

HSP 2 Score: 75.8702 bits (185), Expect = 1.423e-13
Identity = 49/172 (28.49%), Postives = 83/172 (48.26%), Query Frame = 2
Query:   17 ARVLMWHRVMFDAIAPKNRDVATWTVMIGSYSQNGGANDALALFPQMFQQDKLVKPNAFTXXXXXXXXXXXXXXXFGRQIHAYVLRNQYEMLIPFVANCLIDMYSRSGDIDTARVVFDNLKQRNVVSWTSLMTGYGMHGLGDKAHWAFDQMRKEGLAPDGVTFLGLLYACSH 532
            ++ +++ R +FD    KN    TW+ MIG Y +N    +A  +F QM   D +                       GR +H Y ++  + +L   V N +I  Y++ G +  A   F  +  ++V+S+ SL+TG  ++   +++   F +MR  G+ PD  T LG+L ACSH
Sbjct:  253 SKCIIYARRVFDLDFKKNE--VTWSAMIGGYVENEMIKEAGEVFFQMLVNDNVAMVTPVAIGLILMGCARFGDLSGGRCVHCYAVKAGF-ILDLTVQNTIISFYAKYGSLCDAFRQFSEIGLKDVISYNSLITGCVVNCRPEESFRLFHEMRTSGIRPDITTLLGVLTACSH 421          

HSP 3 Score: 74.7146 bits (182), Expect = 3.170e-13
Identity = 46/168 (27.38%), Postives = 85/168 (50.60%), Query Frame = 2
Query:   38 RVMFDAIAPKNRDVATWTVMIGSYSQNGGANDALALFPQMFQQDKLVKPNAFTXXXXXXXXXXXXXXXFGRQIHAYVLRNQYEMLIPFVANCLIDMYSRSGDIDTARVVFDNLKQRNVVSWTSLMTGYGMH-GLGDKAHWAFDQMRKEGLAPDGVTFLGLLYACSHSG 538
            R +FD I     +   W +MI +Y+ N  A  AL L+ +M      V+P  +T                G+ IH++V  + +   + +V   L+D Y++ G+++ A  VFD + +R++V+W ++++G+ +H  L D      D  R +GL+P+  T +G+  A   +G
Sbjct:   55 RHVFDEIPHPRINPIAWDLMIRAYASNDFAEKALDLYYKMLNSG--VRPTKYTYPFVLKACAGLRAIDDGKLIHSHVNCSDFATDM-YVCTALVDFYAKCGELEMAIKVFDEMPKRDMVAWNAMISGFSLHCCLTDVIGLFLDMRRIDGLSPNLSTIVGMFPALGRAG 219          
BLAST of BQ623251 vs. ExPASy Swiss-Prot
Match: PP140_ARATH (Pentatricopeptide repeat-containing protein At2g01510, mitochondrial OS=Arabidopsis thaliana GN=PCMP-H37 PE=2 SV=1)

HSP 1 Score: 94.3597 bits (233), Expect = 3.865e-19
Identity = 53/157 (33.76%), Postives = 85/157 (54.14%), Query Frame = 2
Query:   71 RDVATWTVMIGSYSQNGGANDALALFPQMFQQDKLVKPNAFTXXXXXXXXXXXXXXXFGRQIHAYVLRNQYEMLIPFVANCLIDMYSRSGDIDTARVVFDNLKQRNVVSWTSLMTGYGMHGLGDKAHWAFDQMRKEGLAPDGVTFLGLLYACSHSGM 541
            +D+  W   +    Q G +  AL  F +M      V+ ++FT                G +I+    + + +  I  V N  +DM+ + G+ + ARV+F+ +KQRNVVSW++++ GY M+G   +A   F  M+ EGL P+ VTFLG+L ACSH+G+
Sbjct:  173 KDLVAWNAFLAVCVQTGNSAIALEYFNKMCAD--AVQFDSFTVVSMLSACGQLGSLEIGEEIYDRARKEEIDCNI-IVENARLDMHLKCGNTEAARVLFEEMKQRNVVSWSTMIVGYAMNGDSREALTLFTTMQNEGLRPNYVTFLGVLSACSHAGL 326          
BLAST of BQ623251 vs. ExPASy Swiss-Prot
Match: PP108_ARATH (Putative pentatricopeptide repeat-containing protein At1g68930 OS=Arabidopsis thaliana GN=PCMP-H22 PE=3 SV=1)

HSP 1 Score: 94.3597 bits (233), Expect = 3.865e-19
Identity = 53/174 (30.46%), Postives = 89/174 (51.15%), Query Frame = 2
Query:   20 RVLMWHRVMFDAIAPKNRDVATWTVMIGSYSQNGGANDALALFPQMFQQDKLVKPNAFTXXXXXXXXXXXXXXXFGRQIHAYVLRNQYEMLIPFVANCLIDMYSRSGDIDTARVVFDNLKQRNVVSWTSLMTGYGMHGLGDKAHWAFDQMRKEGLAPDGVTFLGLLYACSHSGM 541
            + L + + +FD +  KN  V +WT M+  Y Q G A +A+ +F  M  Q   + P+ +T                G Q H   + +     +  V+N L+ +Y + GDID +  +F+ +  R+ VSWT++++ Y   G   +    FD+M + GL PDGVT  G++ ACS +G+
Sbjct:  319 KCLHYAKTVFDRMKQKN--VVSWTAMVVGYGQTGRAEEAVKIFLDM--QRSGIDPDHYTLGQAISACANVSSLEEGSQFHGKAITSGLIHYVT-VSNSLVTLYGKCGDIDDSTRLFNEMNVRDAVSWTAMVSAYAQFGRAVETIQLFDKMVQHGLKPDGVTLTGVISACSRAGL 487          

HSP 2 Score: 90.5077 bits (223), Expect = 5.582e-18
Identity = 51/154 (33.12%), Postives = 83/154 (53.90%), Query Frame = 2
Query:   71 RDVATWTVMIGSYSQNGGANDALALFPQMFQQDKLVKPNAFTXXXXXXXXXXXXXXXFGRQIHAYVLRNQYEMLIPFVANCLIDMYSRSGDIDTARVVFDNLKQRNVVSWTSLMTGYGMHGLGDKAHWAFDQMRKEGLAPDGVTFLGLLYACSH 532
            +D  +W  MI   +QNG A +A+  F +M  Q   +K + +                 G+QIHA ++R  ++  I +V + LIDMY +   +  A+ VFD +KQ+NVVSWT+++ GYG  G  ++A   F  M++ G+ PD  T    + AC++
Sbjct:  233 KDSVSWAAMIKGLAQNGLAKEAIECFREMKVQG--LKMDQYPFGSVLPACGGLGAINEGKQIHACIIRTNFQDHI-YVGSALIDMYCKCKCLHYAKTVFDRMKQKNVVSWTAMVVGYGQTGRAEEAVKIFLDMQRSGIDPDHYTLGQAISACAN 383          
BLAST of BQ623251 vs. ExPASy Swiss-Prot
Match: PP419_ARATH (Pentatricopeptide repeat-containing protein At5g46460, mitochondrial OS=Arabidopsis thaliana GN=PCMP-H49 PE=2 SV=1)

HSP 1 Score: 93.9745 bits (232), Expect = 5.048e-19
Identity = 55/157 (35.03%), Postives = 80/157 (50.96%), Query Frame = 2
Query:   68 NRDVATWTVMIGSYSQNGGANDALALFPQMFQQDKLVKPNAFTXXXXXXXXXXXXXXXFGRQIHAYVLRNQYEMLIPFVANCLIDMYSRSGDIDTARVVFDNLKQRNVVSWTSLMTGYGMHGLGDKAHWAFDQMRKEGLAPDGVTFLGLLYACSHSG 538
            +  VA WT ++  YS N    DAL++F  M +   L  PN  T               +G+++H   ++   E    FV N L+ MYS SG+++ A  VF  + ++++VSW S++ G   HG G  A   F QM +    PD +TF GLL ACSH G
Sbjct:  288 HEQVAVWTALLSGYSLNKKHEDALSIFSGMLRNSIL--PNQSTFASGLNSCSALGTLDWGKEMHGVAVKLGLET-DAFVGNSLVVMYSDSGNVNDAVSVFIKIFKKSIVSWNSIIVGCAQHGRGKWAFVIFGQMIRLNKEPDEITFTGLLSACSHCG 441          
BLAST of BQ623251 vs. ExPASy Swiss-Prot
Match: PP410_ARATH (Putative pentatricopeptide repeat-containing protein At5g40405 OS=Arabidopsis thaliana GN=PCMP-H14 PE=3 SV=1)

HSP 1 Score: 93.9745 bits (232), Expect = 5.048e-19
Identity = 53/171 (30.99%), Postives = 93/171 (54.39%), Query Frame = 2
Query:   26 LMWHRVMFDAIAPKNRDVATWTVMIGSYSQNGGANDALALFPQMFQQDKLVKPNAFTXXXXXXXXXXXXXXXFGRQIHAYVLRNQYEMLIPFVANCLIDMYSRSGDIDTARVVFDNLKQRNVVSWTSLMTGYGMHGLGDKAHWAFDQMRKEGLAPDGVTFLGLLYACSHSG 538
            +++ R +F+ +    RD   W  MI  Y+Q G + +AL +F  M  Q + VK N                   GR  H+Y+ RN+ ++ +  +A  L+D+Y++ GD++ A  VF  ++++NV +W+S + G  M+G G+K    F  M+++G+ P+ VTF+ +L  CS  G
Sbjct:  190 VVFARKLFEGMP--ERDPIAWNAMISGYAQVGESREALNVFHLM--QLEGVKVNGVAMISVLSACTQLGALDQGRWAHSYIERNKIKITVR-LATTLVDLYAKCGDMEKAMEVFWGMEEKNVYTWSSALNGLAMNGFGEKCLELFSLMKQDGVTPNAVTFVSVLRGCSVVG 355          
BLAST of BQ623251 vs. ExPASy Swiss-Prot
Match: PP336_ARATH (Pentatricopeptide repeat-containing protein At4g22765 OS=Arabidopsis thaliana GN=PCMP-E6 PE=2 SV=1)

HSP 1 Score: 93.9745 bits (232), Expect = 5.048e-19
Identity = 49/157 (31.21%), Postives = 87/157 (55.41%), Query Frame = 2
Query:   71 RDVATWTVMIGSYSQNGGANDALALFPQMFQQDKLVKPNAFTXXXXXXXXXXXXXXXFGRQIHAYVLRNQYEMLIPFVANCLIDMYSRSGDIDTARVVFDNLKQRNVVSWTSLMTGYGMHGLGDKAHWAFDQMRKEGLAPDGVTFLGLLYACSHSGM 541
            +D   +  MI  Y+QNG   DAL LF QM +++  ++P+  T               FG  + +Y+  +  + +   ++  LID+Y + GD   A  +F NL +++ VS+++++ G G++G+  +A+  F  M ++ + P+ VTF GLL A SHSG+
Sbjct:  292 KDKLVYDAMIACYTQNGKPKDALKLFAQMLERNSYIQPDEITLSSVVSANSQLGNTSFGTWVESYITEHGIK-IDDLLSTSLIDLYMKGGDFAKAFKMFSNLNKKDTVSYSAMIMGCGINGMATEANSLFTAMIEKKIPPNVVTFTGLLSAYSHSGL 447          
BLAST of BQ623251 vs. ExPASy Swiss-Prot
Match: PP309_ARATH (Pentatricopeptide repeat-containing protein At4g14170 OS=Arabidopsis thaliana GN=PCMP-E17 PE=2 SV=2)

HSP 1 Score: 93.9745 bits (232), Expect = 5.048e-19
Identity = 60/176 (34.09%), Postives = 91/176 (51.70%), Query Frame = 2
Query:   26 LMWHRVMFDAIAPKNRDVATWTVMIGSYSQNGGANDALALFPQM----FQQDKLVKPNAFTXXXXXXXXXXXXXXXFGRQIHAYVLRNQYEMLIPFVANCLIDMYSRSGDIDTARVVFDNLKQRNVVSWTSLMTGYGMHGLGDKAHWAFDQMRKEGLAPDGVTFLGLLYACSHSGM 541
            L+  R +FD +    RD   +T M G Y Q G A   LA+F +M    F  D +V  +                   G+ +H + +R +   L   + N + DMY +   +D A  VF N+ +R+V+SW+SL+ GYG+ G    +   FD+M KEG+ P+ VTFLG+L AC+H G+
Sbjct:  185 LLHARKLFDDMPV--RDSVLYTAMFGGYVQQGEAMLGLAMFREMGYSGFALDSVVMVSLLMACGQLGALKH------GKSVHGWCIR-RCSCLGLNLGNAITDMYVKCSILDYAHTVFVNMSRRDVISWSSLILGYGLDGDVVMSFKLFDEMLKEGIEPNAVTFLGVLSACAHGGL 351          
BLAST of BQ623251 vs. ExPASy Swiss-Prot
Match: PPR8_ARATH (Pentatricopeptide repeat-containing protein At1g03540 OS=Arabidopsis thaliana GN=PCMP-E4 PE=2 SV=1)

HSP 1 Score: 93.5893 bits (231), Expect = 6.594e-19
Identity = 51/169 (30.18%), Postives = 93/169 (55.03%), Query Frame = 2
Query:   38 RVMFDAIAPKNRDVATWTVMIGSYSQNGGANDALALFPQMFQQDKLVKPNAFTXXXXXXXXXXXXXXXFGRQIHA-YVLRNQYEMLIPFVANCLIDMYSRSGDIDTARVVFDNLKQRNVVSWTSLMTGYGMHGLGDKAHWAFDQMRKEGLAPDGVTFLGLLYACSHSGM 541
            R +F+ ++ KN    +W+ ++G Y QNG    A+ +F +M ++D       +                 G++IH  YV R  +  +I  V + LID+Y +SG ID+A  V+  +  RN+++W ++++    +G G++A   F+ M K+G+ PD ++F+ +L AC H+GM
Sbjct:  320 RQVFNGMSKKNS--VSWSALLGGYCQNGEHEKAIEIFREMEEKD------LYCFGTVLKACAGLAAVRLGKEIHGQYVRRGCFGNVI--VESALIDLYGKSGCIDSASRVYSKMSIRNMITWNAMLSALAQNGRGEEAVSFFNDMVKKGIKPDYISFIAILTACGHTGM 478          

HSP 2 Score: 68.9366 bits (167), Expect = 1.739e-11
Identity = 42/137 (30.66%), Postives = 71/137 (51.82%), Query Frame = 2
Query:   74 DVATWTVMIGSYSQNGGANDALALFPQMFQQDKLVKPNAFTXXXXXXXXXXXXXXXFGRQIHAYVLRNQYEMLIPFVANCLIDMYSRSGDIDTARVVFDNLKQRNVVSWTSLMTGYGMHGLGDKAHWAFDQMRKEGL 484
            DV  WT ++ ++S+N    +AL LF  M +   LV P+  T                G++IH  ++ N     +  V + L+DMY + G +  AR VF+ + ++N VSW++L+ GY  +G  +KA   F +M ++ L
Sbjct:  228 DVICWTAVLSAFSKNDLYEEALGLFYAMHRGKGLV-PDGSTFGTVLTACGNLRRLKQGKEIHGKLITNGIGSNV-VVESSLLDMYGKCGSVREARQVFNGMSKKNSVSWSALLGGYCQNGEHEKAIEIFREMEEKDL 362          
The following BLAST results are available for this feature:
BLAST of BQ623251 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 190
Match NameE-valueIdentityDescription
PP316_ARATH2.960e-1931.01Pentatricopeptide repeat-containing protein At4g16... [more]
PP303_ARATH2.960e-1933.76Pentatricopeptide repeat-containing protein At4g04... [more]
PP237_ARATH3.865e-1931.85Pentatricopeptide repeat-containing protein At3g16... [more]
PP140_ARATH3.865e-1933.76Pentatricopeptide repeat-containing protein At2g01... [more]
PP108_ARATH3.865e-1930.46Putative pentatricopeptide repeat-containing prote... [more]
PP419_ARATH5.048e-1935.03Pentatricopeptide repeat-containing protein At5g46... [more]
PP410_ARATH5.048e-1930.99Putative pentatricopeptide repeat-containing prote... [more]
PP336_ARATH5.048e-1931.21Pentatricopeptide repeat-containing protein At4g22... [more]
PP309_ARATH5.048e-1934.09Pentatricopeptide repeat-containing protein At4g14... [more]
PPR8_ARATH6.594e-1930.18Pentatricopeptide repeat-containing protein At1g03... [more]

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Properties
Property NameValue
Genbank descriptionUSDA-FP_00342 Ridge pineapple sweet orange entire seedling Citrus sinensis cDNA clone USDA-FP_00342 5, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>BQ623251 ID=BQ623251; Name=BQ623251; organism=Citrus sinensis; type=EST; length=546bp
GACATGTACGCTAAGTGCAAGAGTGTTGATGTGGCACCGTGTTATGTTTG
ATGCAATTGCACCAAAAAACAGGGATGTTGCAACTTGGACAGTAATGATA
GGTAGTTATTCTCAGAATGGAGGAGCCAATGATGCCCTGGCACTTTTTCC
TCAGATGTTCCAGCAAGATAAACTTGTAAAGCCAAATGCTTTTACTTTAT
CTTGTGCTCTTATGGCTTGTGCTCGTTTGGCTGCACTGAGATTTGGTAGA
CAAATTCATGCATATGTGCTGCGGAATCAATATGAGATGTTGATTCCGTT
TGTGGCCAATTGCCTGATAGATATGTATTCACGATCAGGAGACATTGACA
CAGCTAGAGTTGTATTTGATAACTTGAAGCAAAGAAATGTTGTTTCCTGG
ACATCCTTGATGACAGGTTATGGCATGCACGGTCTTGGCGACAAAGCTCA
CTGGGCTTTTGATCAGATGAGGAAAGAAGGTCTAGCACCTGATGGTGTAA
CCTTCCTTGGTCTGCTCTATGCTTGCAGCCACTCAGGAATGGGTGA
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