BQ623302

Overview
NameBQ623302
Unique NameBQ623302
TypeEST
OrganismCitrus sinensis (Sweet orange)
Sequence length459
Libraries
Library NameType
Ridge pineapple sweet orange entire seedlingcdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Homology
[Close]
BLAST of BQ623302 vs. ExPASy Swiss-Prot
Match: SODC_ASPNC (Superoxide dismutase [Cu-Zn] OS=Aspergillus niger (strain CBS 513.88 / FGSC A1513) GN=sodC PE=3 SV=1)

HSP 1 Score: 71.2478 bits (173), Expect = 4.107e-16
Identity = 36/70 (51.43%), Postives = 45/70 (64.29%), Query Frame = 2 
Query:   95 GDLGNIVANANGVAEATIVDNQISLDGPNTVVGRAFVVHELEDDLGKGGHELSLTTGNAGGRLACGVVGL 304
            GDLGN   +A G A  +  D  + L G  +V+GR  VVH   DDLG+GG+E S  TGNAG R ACGV+G+
Sbjct:   83 GDLGNFKTDAEGNAVGSKQDKLVKLIGAESVLGRTLVVHAGTDDLGRGGNEESKKTGNAGPRPACGVIGI 152

HSP 2 Score: 33.8834 bits (76), Expect = 4.107e-16
Identity = 13/20 (65.00%), Postives = 13/20 (65.00%), Query Frame = 1 
Query:    1 DTTNGCISTGAHFNPNNMTH 60
            D TNGC S G HFNP   TH
Sbjct:   53 DNTNGCTSAGPHFNPFGKTH 72
[Close]
BLAST of BQ623302 vs. ExPASy Swiss-Prot
Match: SODC_PBCV1 (Superoxide dismutase [Cu-Zn] OS=Paramecium bursaria Chlorella virus 1 GN=A245R PE=3 SV=1)

HSP 1 Score: 76.2554 bits (186), Expect = 6.869e-16
Identity = 37/69 (53.62%), Postives = 47/69 (68.12%), Query Frame = 2 
Query:   95 GDLGNIVANANGVAEATIVDNQISLDGPNTVVGRAFVVHELEDDLGKGGHELSLTTGNAGGRLACGVVG 301
            GDLGNI+A+ NG A+ +  D+ I L G   ++GRA VVH   DDLG GG+  SL TGNAG R+ C V+G
Sbjct:  112 GDLGNILADKNGKAKYSFYDSMIKLRGKCNIIGRAIVVHADTDDLGLGGNAESLKTGNAGKRIGCAVIG 180

HSP 2 Score: 28.1054 bits (61), Expect = 6.869e-16
Identity = 11/20 (55.00%), Postives = 12/20 (60.00%), Query Frame = 1 
Query:    1 DTTNGCISTGAHFNPNNMTH 60
            D T+GC S  AHFNP    H
Sbjct:   82 DLTDGCTSACAHFNPFGTAH 101
[Close]
BLAST of BQ623302 vs. ExPASy Swiss-Prot
Match: SODC_EMENI (Superoxide dismutase [Cu-Zn] OS=Emericella nidulans GN=sodA PE=1 SV=3)

HSP 1 Score: 69.707 bits (169), Expect = 1.173e-15
Identity = 35/70 (50.00%), Postives = 44/70 (62.86%), Query Frame = 2 
Query:   95 GDLGNIVANANGVAEATIVDNQISLDGPNTVVGRAFVVHELEDDLGKGGHELSLTTGNAGGRLACGVVGL 304
            GDLGN   +A G ++ +  D  I L G  +V+GR  VVH   DDLG+G  E S  TGNAG R ACGV+G+
Sbjct:   83 GDLGNFKTDAEGNSKGSKTDKLIKLIGAESVLGRTLVVHAGTDDLGRGDSEESKKTGNAGARPACGVIGI 152

HSP 2 Score: 33.8834 bits (76), Expect = 1.173e-15
Identity = 13/20 (65.00%), Postives = 13/20 (65.00%), Query Frame = 1 
Query:    1 DTTNGCISTGAHFNPNNMTH 60
            D TNGC S G HFNP   TH
Sbjct:   53 DNTNGCTSAGPHFNPFGKTH 72
[Close]
BLAST of BQ623302 vs. ExPASy Swiss-Prot
Match: CCS_RAT (Copper chaperone for superoxide dismutase OS=Rattus norvegicus GN=Ccs PE=1 SV=1)

HSP 1 Score: 73.559 bits (179), Expect = 7.164e-15
Identity = 38/69 (55.07%), Postives = 48/69 (69.57%), Query Frame = 2 
Query:   92 RGDLGNIVANANGVAEATIVDNQISLDGPNTVVGRAFVVHELEDDLGKGGHELSLTTGNAGGRLACGVV 298
            RGDLGN+ A A+G A   I D Q+ +     V+GR+ VV E EDDLG+GGH LS  TGN+G RLACG++
Sbjct:  165 RGDLGNVHAEASGRATFRIEDKQLKVWD---VIGRSLVVDEGEDDLGRGGHPLSKVTGNSGKRLACGII 230

HSP 2 Score: 27.335 bits (59), Expect = 7.164e-15
Identity = 10/20 (50.00%), Postives = 12/20 (60.00%), Query Frame = 1 
Query:    1 DTTNGCISTGAHFNPNNMTH 60
            D T  C S G HFNP+  +H
Sbjct:  136 DLTKDCSSCGDHFNPDGASH 155
[Close]
BLAST of BQ623302 vs. ExPASy Swiss-Prot
Match: CCS_HUMAN (Copper chaperone for superoxide dismutase OS=Homo sapiens GN=CCS PE=1 SV=1)

HSP 1 Score: 70.8626 bits (172), Expect = 9.310e-15
Identity = 35/69 (50.72%), Postives = 49/69 (71.01%), Query Frame = 2 
Query:   92 RGDLGNIVANANGVAEATIVDNQISLDGPNTVVGRAFVVHELEDDLGKGGHELSLTTGNAGGRLACGVV 298
            RGDLGN+ A+A+G A   + D Q+ +     V+GR+ ++ E EDDLG+GGH LS  TGN+G RLACG++
Sbjct:  165 RGDLGNVRADADGRAIFRMEDEQLKVWD---VIGRSLIIDEGEDDLGRGGHPLSKITGNSGERLACGII 230

HSP 2 Score: 29.6462 bits (65), Expect = 9.310e-15
Identity = 11/20 (55.00%), Postives = 13/20 (65.00%), Query Frame = 1 
Query:    1 DTTNGCISTGAHFNPNNMTH 60
            D TN C S G HFNP+  +H
Sbjct:  136 DLTNNCNSCGNHFNPDGASH 155
[Close]
BLAST of BQ623302 vs. ExPASy Swiss-Prot
Match: CCS_MOUSE (Copper chaperone for superoxide dismutase OS=Mus musculus GN=Ccs PE=1 SV=1)

HSP 1 Score: 72.4034 bits (176), Expect = 2.042e-14
Identity = 37/69 (53.62%), Postives = 47/69 (68.12%), Query Frame = 2 
Query:   92 RGDLGNIVANANGVAEATIVDNQISLDGPNTVVGRAFVVHELEDDLGKGGHELSLTTGNAGGRLACGVV 298
            RGDLGN+ A A G A   I D Q+ +     V+GR+ V+ E EDDLG+GGH LS  TGN+G RLACG++
Sbjct:  165 RGDLGNVRAEAGGRATFRIEDKQLKVWD---VIGRSLVIDEGEDDLGRGGHPLSKITGNSGKRLACGII 230

HSP 2 Score: 26.9498 bits (58), Expect = 2.042e-14
Identity = 10/20 (50.00%), Postives = 12/20 (60.00%), Query Frame = 1 
Query:    1 DTTNGCISTGAHFNPNNMTH 60
            D T  C S G HFNP+  +H
Sbjct:  136 DLTRDCNSCGDHFNPDGASH 155
[Close]
BLAST of BQ623302 vs. ExPASy Swiss-Prot
Match: CCS_PIG (Copper chaperone for superoxide dismutase OS=Sus scrofa GN=CCS PE=2 SV=1)

HSP 1 Score: 69.707 bits (169), Expect = 2.042e-14
Identity = 35/69 (50.72%), Postives = 48/69 (69.57%), Query Frame = 2 
Query:   92 RGDLGNIVANANGVAEATIVDNQISLDGPNTVVGRAFVVHELEDDLGKGGHELSLTTGNAGGRLACGVV 298
            RGDLGN+ A+A+G A   + D  + +     V+GR+ V+ E EDDLG+GGH LS  TGN+G RLACG++
Sbjct:  165 RGDLGNVCADADGRAVFRMEDELLKVWD---VIGRSLVIDEGEDDLGRGGHPLSKITGNSGERLACGII 230

HSP 2 Score: 29.6462 bits (65), Expect = 2.042e-14
Identity = 11/20 (55.00%), Postives = 13/20 (65.00%), Query Frame = 1 
Query:    1 DTTNGCISTGAHFNPNNMTH 60
            D T  C S G HFNP+ M+H
Sbjct:  136 DLTRNCNSCGDHFNPDGMSH 155
[Close]
BLAST of BQ623302 vs. ExPASy Swiss-Prot
Match: SODC_ASPOR (Superoxide dismutase [Cu-Zn] OS=Aspergillus oryzae GN=sodC PE=3 SV=3)

HSP 1 Score: 67.0106 bits (162), Expect = 3.539e-14
Identity = 34/70 (48.57%), Postives = 42/70 (60.00%), Query Frame = 2 
Query:   95 GDLGNIVANANGVAEATIVDNQISLDGPNTVVGRAFVVHELEDDLGKGGHELSLTTGNAGGRLACGVVGL 304
            GDLGN   +A G A  +  D  I L G  +V+GR  V+H   DDLG+  H  S  TGNAG R ACGV+G+
Sbjct:   83 GDLGNFKTDAEGNAVGSKQDKLIKLIGAESVLGRTLVIHAGTDDLGRSEHPESKKTGNAGARPACGVIGI 152

HSP 2 Score: 31.5722 bits (70), Expect = 3.539e-14
Identity = 12/20 (60.00%), Postives = 12/20 (60.00%), Query Frame = 1 
Query:    1 DTTNGCISTGAHFNPNNMTH 60
            D TNGC S G HFNP    H
Sbjct:   53 DNTNGCTSAGPHFNPFGKEH 72
[Close]
BLAST of BQ623302 vs. ExPASy Swiss-Prot
Match: SODC_ASPFL (Superoxide dismutase [Cu-Zn] OS=Aspergillus flavus GN=sodC PE=3 SV=3)

HSP 1 Score: 67.0106 bits (162), Expect = 3.544e-14
Identity = 34/70 (48.57%), Postives = 42/70 (60.00%), Query Frame = 2 
Query:   95 GDLGNIVANANGVAEATIVDNQISLDGPNTVVGRAFVVHELEDDLGKGGHELSLTTGNAGGRLACGVVGL 304
            GDLGN   +A G A  +  D  I L G  +V+GR  V+H   DDLG+  H  S  TGNAG R ACGV+G+
Sbjct:   82 GDLGNFKTDAEGNAVGSKQDKLIKLIGAESVLGRTLVIHAGTDDLGRSEHPESKKTGNAGARPACGVIGI 151

HSP 2 Score: 31.5722 bits (70), Expect = 3.544e-14
Identity = 12/20 (60.00%), Postives = 12/20 (60.00%), Query Frame = 1 
Query:    1 DTTNGCISTGAHFNPNNMTH 60
            D TNGC S G HFNP    H
Sbjct:   52 DNTNGCTSAGPHFNPFGKEH 71
[Close]
BLAST of BQ623302 vs. ExPASy Swiss-Prot
Match: SODC6_DICDI (Probable superoxide dismutase [Cu-Zn] 6 OS=Dictyostelium discoideum GN=sodF PE=3 SV=1)

HSP 1 Score: 64.6994 bits (156), Expect = 7.775e-14
Identity = 32/68 (47.06%), Postives = 44/68 (64.71%), Query Frame = 2 
Query:   95 GDLGNIVANANGVAEATIVDNQISLDGPNTVVGRAFVVHELEDDLGKGGHELSLTTGNAGGRLACGVV 298
            GDLGNI A +NGVA  +I D  +SL G  +V+GR  V+H   DD G+G    S T G++G R+ CG++
Sbjct:   81 GDLGNIKALSNGVATISIRDTIMSLFGDISVMGRTMVIHSDRDDYGRGNFPDSKTAGHSGKRVGCGII 148

HSP 2 Score: 32.7278 bits (73), Expect = 7.775e-14
Identity = 12/20 (60.00%), Postives = 15/20 (75.00%), Query Frame = 1 
Query:    1 DTTNGCISTGAHFNPNNMTH 60
            DT+NGCIS G H+NP +  H
Sbjct:   51 DTSNGCISAGDHYNPLHREH 70
The following BLAST results are available for this feature:
BLAST of BQ623302 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 135
Match NameE-valueIdentityDescription
SODC_ASPNC4.107e-1651.43Superoxide dismutase [Cu-Zn] OS=Aspergillus niger ... [more]
SODC_PBCV16.869e-1653.62Superoxide dismutase [Cu-Zn] OS=Paramecium bursari... [more]
SODC_EMENI1.173e-1550.00Superoxide dismutase [Cu-Zn] OS=Emericella nidulan... [more]
CCS_RAT7.164e-1555.07Copper chaperone for superoxide dismutase OS=Rattu... [more]
CCS_HUMAN9.310e-1550.72Copper chaperone for superoxide dismutase OS=Homo ... [more]
CCS_MOUSE2.042e-1453.62Copper chaperone for superoxide dismutase OS=Mus m... [more]
CCS_PIG2.042e-1450.72Copper chaperone for superoxide dismutase OS=Sus s... [more]
SODC_ASPOR3.539e-1448.57Superoxide dismutase [Cu-Zn] OS=Aspergillus oryzae... [more]
SODC_ASPFL3.544e-1448.57Superoxide dismutase [Cu-Zn] OS=Aspergillus flavus... [more]
SODC6_DICDI7.775e-1447.06Probable superoxide dismutase [Cu-Zn] 6 OS=Dictyos... [more]

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Properties
Property NameValue
Genbank descriptionUSDA-FP_00393 Ridge pineapple sweet orange entire seedling Citrus sinensis cDNA clone USDA-FP_00393 5, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>BQ623302 ID=BQ623302; Name=BQ623302; organism=Citrus sinensis; type=EST; length=459bp
GATACGACAAATGGGTGTATATCAACAGGAGCACATTTCAATCCTAATAA
CATGACACACCGGTGCCTCCTAAAGATGAAGTGCGACATCGCGTGGTGAC
CTGGGAAACATAGTTGCTAACGCCAATGGTGTGGCAGAAGCAACAATTGT
GGACAACCAGATATCACTGGATGGTCCAAACACAGTAGTTGGAAGAGCCT
TTGTGGTTCATGAGCTTGAGGATGACCTTGGAAAAGGTGGGCATGAACTT
AGTCTAACCACTGGCAATGCAGGTGGAAGACTGGCATGCGGTGTCGTTGG
CTTGACTCCGGTATGAGATCAGCAAAACCAGTGTGGTTGCACTATTTGCT
GCATGCTTTTTCCAGATTATCAATCGGAGCCAAGTACAATGTTGAAAGTG
AGAGCGTGTAACATAAATTTGTGCAGACAGCTGGTATTAATAAAATAATG
CTTGCGGGC
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