BQ623302

Overview
NameBQ623302
Unique NameBQ623302
TypeEST
OrganismCitrus sinensis (Sweet orange)
Sequence length459
Libraries
Library NameType
Ridge pineapple sweet orange entire seedlingcdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Homology
[Close]
BLAST of BQ623302 vs. ExPASy Swiss-Prot
Match: SODC2_MAIZE (Superoxide dismutase [Cu-Zn] 2 OS=Zea mays GN=SODCC.1 PE=2 SV=2)

HSP 1 Score: 98.5969 bits (244), Expect = 6.586e-25
Identity = 44/70 (62.86%), Postives = 55/70 (78.57%), Query Frame = 2 
Query:   95 GDLGNIVANANGVAEATIVDNQISLDGPNTVVGRAFVVHELEDDLGKGGHELSLTTGNAGGRLACGVVGL 304
            GDLGN+ A  +GV    I D+QI L GP++++GRA VVH   DDLGKGGHELS +TGNAGGR+ACG++GL
Sbjct:   80 GDLGNVTAGEDGVVNVNITDSQIPLAGPHSIIGRAVVVHADPDDLGKGGHELSKSTGNAGGRVACGIIGL 149

HSP 2 Score: 36.1946 bits (82), Expect = 6.586e-25
Identity = 14/20 (70.00%), Postives = 15/20 (75.00%), Query Frame = 1 
Query:    1 DTTNGCISTGAHFNPNNMTH 60
            DTTNGC+STG HFNP    H
Sbjct:   50 DTTNGCMSTGPHFNPVGKEH 69
[Close]
BLAST of BQ623302 vs. ExPASy Swiss-Prot
Match: SODC_SCHMA (Superoxide dismutase [Cu-Zn] OS=Schistosoma mansoni GN=SOD PE=1 SV=1)

HSP 1 Score: 97.8265 bits (242), Expect = 6.586e-25
Identity = 45/70 (64.29%), Postives = 55/70 (78.57%), Query Frame = 2 
Query:   95 GDLGNIVANANGVAEATIVDNQISLDGPNTVVGRAFVVHELEDDLGKGGHELSLTTGNAGGRLACGVVGL 304
            GDLGN+VA A+G A     D  ISL+G ++++GR  V+HE EDDLG+GGHELS  TGNAGGRLACGV+GL
Sbjct:   81 GDLGNVVAGADGNAVYNATDKLISLNGSHSIIGRTMVIHENEDDLGRGGHELSKVTGNAGGRLACGVIGL 150

HSP 2 Score: 36.965 bits (84), Expect = 6.586e-25
Identity = 14/20 (70.00%), Postives = 14/20 (70.00%), Query Frame = 1 
Query:    1 DTTNGCISTGAHFNPNNMTH 60
            DTTNGC S GAHFNP    H
Sbjct:   51 DTTNGCTSAGAHFNPTKQEH 70
[Close]
BLAST of BQ623302 vs. ExPASy Swiss-Prot
Match: SODC_ANACO (Superoxide dismutase [Cu-Zn] OS=Ananas comosus GN=SOD1 PE=2 SV=1)

HSP 1 Score: 98.2117 bits (243), Expect = 8.573e-25
Identity = 44/70 (62.86%), Postives = 53/70 (75.71%), Query Frame = 2 
Query:   95 GDLGNIVANANGVAEATIVDNQISLDGPNTVVGRAFVVHELEDDLGKGGHELSLTTGNAGGRLACGVVGL 304
            GDLGN+    +G     IVD+QI L G N+++GRA VVH   DDLGKGGHELS TTGNAGGR+ACG++GL
Sbjct:   81 GDLGNVTVGEDGTVNVNIVDSQIPLSGSNSIIGRAVVVHADPDDLGKGGHELSKTTGNAGGRVACGIIGL 150

HSP 2 Score: 36.1946 bits (82), Expect = 8.573e-25
Identity = 14/20 (70.00%), Postives = 15/20 (75.00%), Query Frame = 1 
Query:    1 DTTNGCISTGAHFNPNNMTH 60
            DTTNGC+STG HFNP    H
Sbjct:   51 DTTNGCMSTGPHFNPAGNEH 70
[Close]
BLAST of BQ623302 vs. ExPASy Swiss-Prot
Match: SODC_NICPL (Superoxide dismutase [Cu-Zn] OS=Nicotiana plumbaginifolia GN=SODCC PE=2 SV=2)

HSP 1 Score: 98.5969 bits (244), Expect = 1.116e-24
Identity = 45/70 (64.29%), Postives = 53/70 (75.71%), Query Frame = 2 
Query:   95 GDLGNIVANANGVAEATIVDNQISLDGPNTVVGRAFVVHELEDDLGKGGHELSLTTGNAGGRLACGVVGL 304
            GDLGNI    +G A  T+ D QI L GP +++GRA VVH   DDLGKGGHELS TTGNAGGR+ACG++GL
Sbjct:   81 GDLGNITVGEDGTASFTLTDKQIPLAGPQSIIGRAVVVHADPDDLGKGGHELSKTTGNAGGRVACGIIGL 150

HSP 2 Score: 35.4242 bits (80), Expect = 1.116e-24
Identity = 13/20 (65.00%), Postives = 15/20 (75.00%), Query Frame = 1 
Query:    1 DTTNGCISTGAHFNPNNMTH 60
            DTTNGC+STG H+NP    H
Sbjct:   51 DTTNGCMSTGPHYNPAGKEH 70
[Close]
BLAST of BQ623302 vs. ExPASy Swiss-Prot
Match: SODC2_SOLLC (Superoxide dismutase [Cu-Zn] 2 OS=Solanum lycopersicum GN=SODCC.5 PE=3 SV=3)

HSP 1 Score: 98.5969 bits (244), Expect = 1.116e-24
Identity = 45/70 (64.29%), Postives = 53/70 (75.71%), Query Frame = 2 
Query:   95 GDLGNIVANANGVAEATIVDNQISLDGPNTVVGRAFVVHELEDDLGKGGHELSLTTGNAGGRLACGVVGL 304
            GDLGNI    +G A  TI D QI L GP +++GRA VVH   DDLGKGGHELS +TGNAGGR+ACG++GL
Sbjct:   81 GDLGNITVGEDGTASFTITDKQIPLTGPQSIIGRAVVVHADPDDLGKGGHELSKSTGNAGGRIACGIIGL 150

HSP 2 Score: 35.4242 bits (80), Expect = 1.116e-24
Identity = 13/20 (65.00%), Postives = 15/20 (75.00%), Query Frame = 1 
Query:    1 DTTNGCISTGAHFNPNNMTH 60
            DTTNGC+STG H+NP    H
Sbjct:   51 DTTNGCMSTGPHYNPAGKEH 70
[Close]
BLAST of BQ623302 vs. ExPASy Swiss-Prot
Match: SODC1_SOLLC (Superoxide dismutase [Cu-Zn] 1 OS=Solanum lycopersicum GN=SODCC.1 PE=2 SV=2)

HSP 1 Score: 98.5969 bits (244), Expect = 1.116e-24
Identity = 45/70 (64.29%), Postives = 53/70 (75.71%), Query Frame = 2 
Query:   95 GDLGNIVANANGVAEATIVDNQISLDGPNTVVGRAFVVHELEDDLGKGGHELSLTTGNAGGRLACGVVGL 304
            GDLGNI    +G A  TI D QI L GP +++GRA VVH   DDLGKGGHELS +TGNAGGR+ACG++GL
Sbjct:   81 GDLGNITVGEDGTASFTITDKQIPLTGPQSIIGRAVVVHADPDDLGKGGHELSKSTGNAGGRIACGIIGL 150

HSP 2 Score: 35.4242 bits (80), Expect = 1.116e-24
Identity = 13/20 (65.00%), Postives = 15/20 (75.00%), Query Frame = 1 
Query:    1 DTTNGCISTGAHFNPNNMTH 60
            DTTNGC+STG H+NP    H
Sbjct:   51 DTTNGCMSTGPHYNPAGKEH 70
[Close]
BLAST of BQ623302 vs. ExPASy Swiss-Prot
Match: SODC_SOLCS (Superoxide dismutase [Cu-Zn] OS=Solidago canadensis var. scabra GN=SODCC PE=2 SV=3)

HSP 1 Score: 97.4413 bits (241), Expect = 1.116e-24
Identity = 45/70 (64.29%), Postives = 54/70 (77.14%), Query Frame = 2 
Query:   95 GDLGNIVANANGVAEATIVDNQISLDGPNTVVGRAFVVHELEDDLGKGGHELSLTTGNAGGRLACGVVGL 304
            GDLGN+    +G A+ TIVD QI L G  +++GRA VVH   DDLGKGGHELS TTGNAGGR+ACG++GL
Sbjct:   82 GDLGNVTVGEDGTAKFTIVDKQIPLIGAQSIIGRAVVVHADPDDLGKGGHELSKTTGNAGGRVACGIIGL 151

HSP 2 Score: 36.5798 bits (83), Expect = 1.116e-24
Identity = 13/20 (65.00%), Postives = 16/20 (80.00%), Query Frame = 1 
Query:    1 DTTNGCISTGAHFNPNNMTH 60
            DTTNGC+STG H+NP+   H
Sbjct:   52 DTTNGCMSTGPHYNPHGKDH 71
[Close]
BLAST of BQ623302 vs. ExPASy Swiss-Prot
Match: SODC_IPOBA (Superoxide dismutase [Cu-Zn] OS=Ipomoea batatas GN=SODCC PE=2 SV=2)

HSP 1 Score: 97.4413 bits (241), Expect = 1.116e-24
Identity = 46/70 (65.71%), Postives = 53/70 (75.71%), Query Frame = 2 
Query:   95 GDLGNIVANANGVAEATIVDNQISLDGPNTVVGRAFVVHELEDDLGKGGHELSLTTGNAGGRLACGVVGL 304
            GDLGNI    +G A  TI D QI L G N+V+GRA VVH   DDLGKGGHELS +TGNAGGR+ACG++GL
Sbjct:   81 GDLGNITVGEDGTASFTITDKQIPLTGANSVIGRAVVVHGDPDDLGKGGHELSKSTGNAGGRVACGIIGL 150

HSP 2 Score: 36.5798 bits (83), Expect = 1.116e-24
Identity = 14/20 (70.00%), Postives = 15/20 (75.00%), Query Frame = 1 
Query:    1 DTTNGCISTGAHFNPNNMTH 60
            DTTNGC+STG HFNP    H
Sbjct:   51 DTTNGCMSTGPHFNPAGKEH 70
[Close]
BLAST of BQ623302 vs. ExPASy Swiss-Prot
Match: SODC_PAUKA (Superoxide dismutase [Cu-Zn] OS=Paulownia kawakamii GN=SODCC PE=2 SV=1)

HSP 1 Score: 97.0561 bits (240), Expect = 1.116e-24
Identity = 45/70 (64.29%), Postives = 53/70 (75.71%), Query Frame = 2 
Query:   95 GDLGNIVANANGVAEATIVDNQISLDGPNTVVGRAFVVHELEDDLGKGGHELSLTTGNAGGRLACGVVGL 304
            GDLGN+    +G A  TIVD QI L GP++++GRA VVH   DDLGKGGHELS TTGN GGR+ACG+ GL
Sbjct:   81 GDLGNVTVGEDGTAAFTIVDKQIPLTGPHSIIGRAVVVHADPDDLGKGGHELSKTTGNTGGRVACGINGL 150

HSP 2 Score: 36.965 bits (84), Expect = 1.116e-24
Identity = 14/20 (70.00%), Postives = 15/20 (75.00%), Query Frame = 1 
Query:    1 DTTNGCISTGAHFNPNNMTH 60
            DTTNGC+STG HFNP    H
Sbjct:   51 DTTNGCLSTGPHFNPAGKEH 70
[Close]
BLAST of BQ623302 vs. ExPASy Swiss-Prot
Match: SODC_CARCR (Superoxide dismutase [Cu-Zn] OS=Caretta caretta PE=1 SV=2)

HSP 1 Score: 98.2117 bits (243), Expect = 3.188e-24
Identity = 46/70 (65.71%), Postives = 55/70 (78.57%), Query Frame = 2 
Query:   95 GDLGNIVANANGVAEATIVDNQISLDGPNTVVGRAFVVHELEDDLGKGGHELSLTTGNAGGRLACGVVGL 304
            GDLGN++AN  GVAE  I D+ ISL G  +++GR  VVHE EDDLGKGG++ SL TGNAG RLACGVVG+
Sbjct:   95 GDLGNVIANKEGVAEVCIKDSLISLTGSQSIIGRTMVVHEKEDDLGKGGNDESLKTGNAGSRLACGVVGI 164

HSP 2 Score: 34.2686 bits (77), Expect = 3.188e-24
Identity = 13/20 (65.00%), Postives = 13/20 (65.00%), Query Frame = 1 
Query:    1 DTTNGCISTGAHFNPNNMTH 60
            D TNGC S GAHFNP    H
Sbjct:   65 DNTNGCTSAGAHFNPPGKNH 84
The following BLAST results are available for this feature:
BLAST of BQ623302 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 135
Match NameE-valueIdentityDescription
SODC2_MAIZE6.586e-2562.86Superoxide dismutase [Cu-Zn] 2 OS=Zea mays GN=SODC... [more]
SODC_SCHMA6.586e-2564.29Superoxide dismutase [Cu-Zn] OS=Schistosoma manson... [more]
SODC_ANACO8.573e-2562.86Superoxide dismutase [Cu-Zn] OS=Ananas comosus GN=... [more]
SODC_NICPL1.116e-2464.29Superoxide dismutase [Cu-Zn] OS=Nicotiana plumbagi... [more]
SODC2_SOLLC1.116e-2464.29Superoxide dismutase [Cu-Zn] 2 OS=Solanum lycopers... [more]
SODC1_SOLLC1.116e-2464.29Superoxide dismutase [Cu-Zn] 1 OS=Solanum lycopers... [more]
SODC_SOLCS1.116e-2464.29Superoxide dismutase [Cu-Zn] OS=Solidago canadensi... [more]
SODC_IPOBA1.116e-2465.71Superoxide dismutase [Cu-Zn] OS=Ipomoea batatas GN... [more]
SODC_PAUKA1.116e-2464.29Superoxide dismutase [Cu-Zn] OS=Paulownia kawakami... [more]
SODC_CARCR3.188e-2465.71Superoxide dismutase [Cu-Zn] OS=Caretta caretta PE... [more]

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Properties
Property NameValue
Genbank descriptionUSDA-FP_00393 Ridge pineapple sweet orange entire seedling Citrus sinensis cDNA clone USDA-FP_00393 5, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>BQ623302 ID=BQ623302; Name=BQ623302; organism=Citrus sinensis; type=EST; length=459bp
GATACGACAAATGGGTGTATATCAACAGGAGCACATTTCAATCCTAATAA
CATGACACACCGGTGCCTCCTAAAGATGAAGTGCGACATCGCGTGGTGAC
CTGGGAAACATAGTTGCTAACGCCAATGGTGTGGCAGAAGCAACAATTGT
GGACAACCAGATATCACTGGATGGTCCAAACACAGTAGTTGGAAGAGCCT
TTGTGGTTCATGAGCTTGAGGATGACCTTGGAAAAGGTGGGCATGAACTT
AGTCTAACCACTGGCAATGCAGGTGGAAGACTGGCATGCGGTGTCGTTGG
CTTGACTCCGGTATGAGATCAGCAAAACCAGTGTGGTTGCACTATTTGCT
GCATGCTTTTTCCAGATTATCAATCGGAGCCAAGTACAATGTTGAAAGTG
AGAGCGTGTAACATAAATTTGTGCAGACAGCTGGTATTAATAAAATAATG
CTTGCGGGC
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