BQ623302

Overview
NameBQ623302
Unique NameBQ623302
TypeEST
OrganismCitrus sinensis (Sweet orange)
Sequence length459
Libraries
Library NameType
Ridge pineapple sweet orange entire seedlingcdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Homology
[Close]
BLAST of BQ623302 vs. ExPASy Swiss-Prot
Match: SODC_DROOR (Superoxide dismutase [Cu-Zn] OS=Drosophila orena GN=Sod PE=3 SV=3)

HSP 1 Score: 85.1149 bits (209), Expect = 5.438e-20
Identity = 39/73 (53.42%), Postives = 53/73 (72.60%), Query Frame = 2 
Query:   95 GDLGNIVANANGVAEATIVDNQISLDGPNTVVGRAFVVHELEDDLGKGGHELSLTTGNAGGRLACGVVGLTPV 313
            GDLGNI A  +   + +I D++I+L G ++++GR  VVH   DDLGKGGHELS +TGNAG R+ CGV+G+  V
Sbjct:   81 GDLGNIEATGDCPTKVSITDSRITLFGADSIIGRTVVVHADADDLGKGGHELSKSTGNAGARIGCGVIGIAKV 153

HSP 2 Score: 33.113 bits (74), Expect = 5.438e-20
Identity = 12/20 (60.00%), Postives = 14/20 (70.00%), Query Frame = 1 
Query:    1 DTTNGCISTGAHFNPNNMTH 60
            D TNGC+S+G HFNP    H
Sbjct:   51 DNTNGCMSSGPHFNPYGKEH 70
[Close]
BLAST of BQ623302 vs. ExPASy Swiss-Prot
Match: SODC_KLULA (Superoxide dismutase [Cu-Zn] OS=Kluyveromyces lactis GN=SOD1 PE=3 SV=1)

HSP 1 Score: 83.5741 bits (205), Expect = 7.066e-20
Identity = 39/71 (54.93%), Postives = 51/71 (71.83%), Query Frame = 2 
Query:   95 GDLGNIVANANGVAEATIVDNQISLDGPNTVVGRAFVVHELEDDLGKGGHELSLTTGNAGGRLACGVVGLT 307
            GDLGNI  +A G+++ ++ D  I L GP ++VGR  VVH  +DDLGKGG   SL TGNAG R ACGV+G++
Sbjct:   83 GDLGNIPTDAQGISKGSLTDKHIKLLGPLSIVGRTVVVHAGQDDLGKGGDAESLKTGNAGARHACGVIGIS 153

HSP 2 Score: 34.2686 bits (77), Expect = 7.066e-20
Identity = 13/20 (65.00%), Postives = 13/20 (65.00%), Query Frame = 1 
Query:    1 DTTNGCISTGAHFNPNNMTH 60
            D TNGC S G HFNP N  H
Sbjct:   53 DNTNGCTSAGPHFNPFNKNH 72
[Close]
BLAST of BQ623302 vs. ExPASy Swiss-Prot
Match: SODC_CHICK (Superoxide dismutase [Cu-Zn] OS=Gallus gallus GN=SOD1 PE=1 SV=3)

HSP 1 Score: 82.8037 bits (203), Expect = 9.191e-20
Identity = 41/70 (58.57%), Postives = 49/70 (70.00%), Query Frame = 2 
Query:   95 GDLGNIVANANGVAEATIVDNQISLDGPNTVVGRAFVVHELEDDLGKGGHELSLTTGNAGGRLACGVVGL 304
            GDLGN+ A   GVAE  I D+ ISL GP+ ++GR  VVH   DDLG+GG   S  TGNAG RLACGV+G+
Sbjct:   83 GDLGNVTAKG-GVAEVEIEDSVISLTGPHCIIGRTMVVHAKSDDLGRGGDNESKLTGNAGPRLACGVIGI 151

HSP 2 Score: 34.6538 bits (78), Expect = 9.191e-20
Identity = 13/20 (65.00%), Postives = 13/20 (65.00%), Query Frame = 1 
Query:    1 DTTNGCISTGAHFNPNNMTH 60
            D TNGC S GAHFNP    H
Sbjct:   53 DNTNGCTSAGAHFNPEGKQH 72
[Close]
BLAST of BQ623302 vs. ExPASy Swiss-Prot
Match: SODC_ASPJA (Superoxide dismutase [Cu-Zn] (Fragment) OS=Aspergillus japonicus GN=sodC PE=3 SV=1)

HSP 1 Score: 79.7221 bits (195), Expect = 1.231e-19
Identity = 40/73 (54.79%), Postives = 51/73 (69.86%), Query Frame = 2 
Query:   95 GDLGNIVANANGVAEATIVDNQISLDGPNTVVGRAFVVHELEDDLGKGGHELSLTTGNAGGRL---ACGVVGL 304
            GDLGNI A A+GVA   + D+QI L G ++++GRA VVH   DDLGKGGHELS TTGN+   +   A G+ G+
Sbjct:   47 GDLGNITAGADGVANVNVSDSQIPLTGAHSIIGRAVVVHADPDDLGKGGHELSKTTGNSNSSMDSCAHGIQGI 119

HSP 2 Score: 37.3502 bits (85), Expect = 1.231e-19
Identity = 14/20 (70.00%), Postives = 15/20 (75.00%), Query Frame = 1 
Query:    1 DTTNGCISTGAHFNPNNMTH 60
            DTTNGC+STG HFNP    H
Sbjct:   17 DTTNGCMSTGPHFNPTGKEH 36
[Close]
BLAST of BQ623302 vs. ExPASy Swiss-Prot
Match: SODC_SCHPO (Superoxide dismutase [Cu-Zn] OS=Schizosaccharomyces pombe GN=sod1 PE=2 SV=1)

HSP 1 Score: 81.6481 bits (200), Expect = 1.555e-19
Identity = 39/70 (55.71%), Postives = 50/70 (71.43%), Query Frame = 2 
Query:   95 GDLGNIVANANGVAEATIVDNQISLDGPNTVVGRAFVVHELEDDLGKGGHELSLTTGNAGGRLACGVVGL 304
            GDLGN+ ++A G  + T  D+ ISL G N+++GR  V+H  EDDLGKG  E SL TGNAG R ACGV+G+
Sbjct:   83 GDLGNLESDAQGNIKTTFSDSVISLFGANSIIGRTIVIHAGEDDLGKGTSEESLKTGNAGARNACGVIGI 152

HSP 2 Score: 35.039 bits (79), Expect = 1.555e-19
Identity = 13/20 (65.00%), Postives = 13/20 (65.00%), Query Frame = 1 
Query:    1 DTTNGCISTGAHFNPNNMTH 60
            D TNGC S G HFNP   TH
Sbjct:   53 DNTNGCTSAGPHFNPEGKTH 72
[Close]
BLAST of BQ623302 vs. ExPASy Swiss-Prot
Match: SODC_DROTE (Superoxide dismutase [Cu-Zn] OS=Drosophila teissieri GN=Sod PE=3 SV=3)

HSP 1 Score: 83.5741 bits (205), Expect = 1.557e-19
Identity = 38/73 (52.05%), Postives = 53/73 (72.60%), Query Frame = 2 
Query:   95 GDLGNIVANANGVAEATIVDNQISLDGPNTVVGRAFVVHELEDDLGKGGHELSLTTGNAGGRLACGVVGLTPV 313
            GDLGNI A  +   + +I D++I+L G ++++GR  VVH   DDLG+GGHELS +TGNAG R+ CGV+G+  V
Sbjct:   81 GDLGNIEATGDCPTKVSITDSKITLFGADSIIGRTVVVHADADDLGQGGHELSKSTGNAGARIGCGVIGIAKV 153

HSP 2 Score: 33.113 bits (74), Expect = 1.557e-19
Identity = 12/20 (60.00%), Postives = 14/20 (70.00%), Query Frame = 1 
Query:    1 DTTNGCISTGAHFNPNNMTH 60
            D TNGC+S+G HFNP    H
Sbjct:   51 DNTNGCMSSGPHFNPYGKEH 70
[Close]
BLAST of BQ623302 vs. ExPASy Swiss-Prot
Match: SODC_DROSI (Superoxide dismutase [Cu-Zn] OS=Drosophila simulans GN=Sod PE=3 SV=2)

HSP 1 Score: 83.1889 bits (204), Expect = 2.025e-19
Identity = 38/73 (52.05%), Postives = 52/73 (71.23%), Query Frame = 2 
Query:   95 GDLGNIVANANGVAEATIVDNQISLDGPNTVVGRAFVVHELEDDLGKGGHELSLTTGNAGGRLACGVVGLTPV 313
            GDLGNI A  +   +  I D++I+L G ++++GR  VVH   DDLG+GGHELS +TGNAG R+ CGV+G+  V
Sbjct:   81 GDLGNIEATGDCPTKVNITDSKITLFGADSIIGRTVVVHADADDLGQGGHELSKSTGNAGARIGCGVIGIAKV 153

HSP 2 Score: 33.113 bits (74), Expect = 2.025e-19
Identity = 12/20 (60.00%), Postives = 14/20 (70.00%), Query Frame = 1 
Query:    1 DTTNGCISTGAHFNPNNMTH 60
            D TNGC+S+G HFNP    H
Sbjct:   51 DNTNGCMSSGPHFNPYGKEH 70
[Close]
BLAST of BQ623302 vs. ExPASy Swiss-Prot
Match: SODC_DROSE (Superoxide dismutase [Cu-Zn] OS=Drosophila sechellia GN=Sod PE=3 SV=2)

HSP 1 Score: 83.1889 bits (204), Expect = 2.025e-19
Identity = 38/73 (52.05%), Postives = 52/73 (71.23%), Query Frame = 2 
Query:   95 GDLGNIVANANGVAEATIVDNQISLDGPNTVVGRAFVVHELEDDLGKGGHELSLTTGNAGGRLACGVVGLTPV 313
            GDLGNI A  +   +  I D++I+L G ++++GR  VVH   DDLG+GGHELS +TGNAG R+ CGV+G+  V
Sbjct:   81 GDLGNIEATGDCPTKVNITDSKITLFGADSIIGRTVVVHADADDLGQGGHELSKSTGNAGARIGCGVIGIAKV 153

HSP 2 Score: 33.113 bits (74), Expect = 2.025e-19
Identity = 12/20 (60.00%), Postives = 14/20 (70.00%), Query Frame = 1 
Query:    1 DTTNGCISTGAHFNPNNMTH 60
            D TNGC+S+G HFNP    H
Sbjct:   51 DNTNGCMSSGPHFNPYGKEH 70
[Close]
BLAST of BQ623302 vs. ExPASy Swiss-Prot
Match: SODC_DROME (Superoxide dismutase [Cu-Zn] OS=Drosophila melanogaster GN=Sod PE=1 SV=2)

HSP 1 Score: 83.1889 bits (204), Expect = 2.025e-19
Identity = 38/73 (52.05%), Postives = 52/73 (71.23%), Query Frame = 2 
Query:   95 GDLGNIVANANGVAEATIVDNQISLDGPNTVVGRAFVVHELEDDLGKGGHELSLTTGNAGGRLACGVVGLTPV 313
            GDLGNI A  +   +  I D++I+L G ++++GR  VVH   DDLG+GGHELS +TGNAG R+ CGV+G+  V
Sbjct:   81 GDLGNIEATGDCPTKVNITDSKITLFGADSIIGRTVVVHADADDLGQGGHELSKSTGNAGARIGCGVIGIAKV 153

HSP 2 Score: 33.113 bits (74), Expect = 2.025e-19
Identity = 12/20 (60.00%), Postives = 14/20 (70.00%), Query Frame = 1 
Query:    1 DTTNGCISTGAHFNPNNMTH 60
            D TNGC+S+G HFNP    H
Sbjct:   51 DNTNGCMSSGPHFNPYGKEH 70
[Close]
BLAST of BQ623302 vs. ExPASy Swiss-Prot
Match: SODC_DROMA (Superoxide dismutase [Cu-Zn] OS=Drosophila mauritiana GN=Sod PE=3 SV=2)

HSP 1 Score: 83.1889 bits (204), Expect = 2.025e-19
Identity = 38/73 (52.05%), Postives = 52/73 (71.23%), Query Frame = 2 
Query:   95 GDLGNIVANANGVAEATIVDNQISLDGPNTVVGRAFVVHELEDDLGKGGHELSLTTGNAGGRLACGVVGLTPV 313
            GDLGNI A  +   +  I D++I+L G ++++GR  VVH   DDLG+GGHELS +TGNAG R+ CGV+G+  V
Sbjct:   81 GDLGNIEATGDCPTKVNITDSKITLFGADSIIGRTVVVHADADDLGQGGHELSKSTGNAGARIGCGVIGIAKV 153

HSP 2 Score: 33.113 bits (74), Expect = 2.025e-19
Identity = 12/20 (60.00%), Postives = 14/20 (70.00%), Query Frame = 1 
Query:    1 DTTNGCISTGAHFNPNNMTH 60
            D TNGC+S+G HFNP    H
Sbjct:   51 DNTNGCMSSGPHFNPYGKEH 70
The following BLAST results are available for this feature:
BLAST of BQ623302 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 135
Match NameE-valueIdentityDescription
SODC_DROOR5.438e-2053.42Superoxide dismutase [Cu-Zn] OS=Drosophila orena G... [more]
SODC_KLULA7.066e-2054.93Superoxide dismutase [Cu-Zn] OS=Kluyveromyces lact... [more]
SODC_CHICK9.191e-2058.57Superoxide dismutase [Cu-Zn] OS=Gallus gallus GN=S... [more]
SODC_ASPJA1.231e-1954.79Superoxide dismutase [Cu-Zn] (Fragment) OS=Aspergi... [more]
SODC_SCHPO1.555e-1955.71Superoxide dismutase [Cu-Zn] OS=Schizosaccharomyce... [more]
SODC_DROTE1.557e-1952.05Superoxide dismutase [Cu-Zn] OS=Drosophila teissie... [more]
SODC_DROSI2.025e-1952.05Superoxide dismutase [Cu-Zn] OS=Drosophila simulan... [more]
SODC_DROSE2.025e-1952.05Superoxide dismutase [Cu-Zn] OS=Drosophila sechell... [more]
SODC_DROME2.025e-1952.05Superoxide dismutase [Cu-Zn] OS=Drosophila melanog... [more]
SODC_DROMA2.025e-1952.05Superoxide dismutase [Cu-Zn] OS=Drosophila mauriti... [more]

Pages

back to top
Properties
Property NameValue
Genbank descriptionUSDA-FP_00393 Ridge pineapple sweet orange entire seedling Citrus sinensis cDNA clone USDA-FP_00393 5, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>BQ623302 ID=BQ623302; Name=BQ623302; organism=Citrus sinensis; type=EST; length=459bp
GATACGACAAATGGGTGTATATCAACAGGAGCACATTTCAATCCTAATAA
CATGACACACCGGTGCCTCCTAAAGATGAAGTGCGACATCGCGTGGTGAC
CTGGGAAACATAGTTGCTAACGCCAATGGTGTGGCAGAAGCAACAATTGT
GGACAACCAGATATCACTGGATGGTCCAAACACAGTAGTTGGAAGAGCCT
TTGTGGTTCATGAGCTTGAGGATGACCTTGGAAAAGGTGGGCATGAACTT
AGTCTAACCACTGGCAATGCAGGTGGAAGACTGGCATGCGGTGTCGTTGG
CTTGACTCCGGTATGAGATCAGCAAAACCAGTGTGGTTGCACTATTTGCT
GCATGCTTTTTCCAGATTATCAATCGGAGCCAAGTACAATGTTGAAAGTG
AGAGCGTGTAACATAAATTTGTGCAGACAGCTGGTATTAATAAAATAATG
CTTGCGGGC
back to top