BQ623342

Overview
NameBQ623342
Unique NameBQ623342
TypeEST
OrganismCitrus sinensis (Sweet orange)
Sequence length663
Libraries
Library NameType
Ridge pineapple sweet orange entire seedlingcdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Homology
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BLAST of BQ623342 vs. ExPASy Swiss-Prot
Match: LCYB_SYNE7 (Lycopene beta cyclase OS=Synechococcus elongatus (strain PCC 7942) GN=crtL PE=3 SV=1)

HSP 1 Score: 67.781 bits (164), Expect = 5.767e-11
Identity = 48/141 (34.04%), Postives = 63/141 (44.68%), Query Frame = 3 
Query:   99 ILDLVVIGCGPAGLALAAESAKLGLNV-GL--IGPDLPFTNNYGVWEDEFRDLGLEGCIEHVWRDTVVYIDEDEPILIGRAYGRVSXXXXXXXXXXXCVESGVSYLSSKVESITESTSGHRLVACEHDMIVPCRLATVASG 512
            + D +VIG GPAGLA+AAE A+ GL V GL  + P  P+ N YG+W  E   LGLE    H W + V Y  E  P+     YG              C + G+ +   K  +I    S H  V       +  RL    +G
Sbjct:    1 MFDALVIGSGPAGLAIAAELAQRGLKVQGLSPVDPFHPWENTYGIWGPELDSLGLEHLFGHRWSNCVSYFGE-APVQHQYNYGLFDRAQLQQHWLRQCEQGGLQWQLGKAAAIAHD-SHHSCVTTAAGQELQARLVVDTTG 139
The following BLAST results are available for this feature:
BLAST of BQ623342 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 11
Match NameE-valueIdentityDescription
LCYB_SYNE75.767e-1134.04Lycopene beta cyclase OS=Synechococcus elongatus (... [more]

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Properties
Property NameValue
Genbank descriptionUSDA-FP_00433 Ridge pineapple sweet orange entire seedling Citrus sinensis cDNA clone USDA-FP_00433 5, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>BQ623342 ID=BQ623342; Name=BQ623342; organism=Citrus sinensis; type=EST; length=663bp
GCTCTCAGCTTGTTTTCGTACAAATGCAGCAAAACAAGTCAATGGATAAA
CAGTCTAAATTAGCCGATAAGCTACCGCCAATATCAATTGGTAATGGTAT
TTTGGATTTGGTGGTGATTGGTTGTGGCCCAGCTGGTCTTGCTTTGGCTG
CAGAATCAGCGAAGTTGGGATTAAATGTTGGACTTATTGGCCCGGATCTC
CCTTTCACAAACAATTATGGTGTGTGGGAAGATGAATTTAGAGATCTTGG
ACTTGAAGGGTGTATCGAACATGTCTGGAGAGACACAGTTGTATATATTG
ATGAAGATGAACCCATCTTGATTGGTCGTGCTTATGGACGAGTTAGTCGA
CATTTGCTTCATGAAGAATTATTAAGAAGGTGTGTCGAGTCAGGTGTTTC
ATATCTTAGCTCAAAAGTGGAAAGCATTACGGAATCTACCAGTGGTCATC
GTCTTGTAGCTTGTGAACATGATATGATTGTCCCCTGCAGGCTTGCTACT
GTTGCTTCTGGAGCAGCATCAGGGAAGCTATTGGAATATGAGGGGGGGGG
GTCCCAAAGTTTCTGTCCAAACAGCTTATGGTGTTGGAGGGTTAAGGGGG
AAAATAATCCATATGATCCAAGCCTTATGGGTTTCATGGACTACAGAGAC
TGTACTAAGCAAA
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