BQ623343

Overview
NameBQ623343
Unique NameBQ623343
TypeEST
OrganismCitrus sinensis (Sweet orange)
Sequence length303
Libraries
Library NameType
Ridge pineapple sweet orange entire seedlingcdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Alignments
Feature NameTypeLocationAnalysis
Csv1_Contig9540 contig Csv1_Contig9540:697..999. BLAST: Citrus Unigene V1 Contigs to Prunus persica proteins V1
Homology
BLAST of BQ623343 vs. ExPASy Swiss-Prot
Match: CB21_PETSP (Chlorophyll a-b binding protein 13, chloroplastic OS=Petunia sp. GN=CAB13 PE=3 SV=1)

HSP 1 Score: 131.339 bits (329), Expect = 1.457e-30
Identity = 62/64 (96.88%), Postives = 64/64 (100.00%), Query Frame = 2
Query:    2 DPEAFAELKVKEIKNGRLAMFSMFGFFVQAIVTGKGPLENLADHLADPVNNNAWAYATNFVPGK 193
            DPEAFAEL+VKEIKNGRLAMFSMFGFFVQAIVTGKGPLENLADHLADPVNNNAWA+ATNFVPGK
Sbjct:  203 DPEAFAELEVKEIKNGRLAMFSMFGFFVQAIVTGKGPLENLADHLADPVNNNAWAFATNFVPGK 266          
BLAST of BQ623343 vs. ExPASy Swiss-Prot
Match: CB21_ARATH (Chlorophyll a-b binding protein 165/180, chloroplastic OS=Arabidopsis thaliana GN=LHCP-A PE=1 SV=1)

HSP 1 Score: 131.339 bits (329), Expect = 1.457e-30
Identity = 61/64 (95.31%), Postives = 64/64 (100.00%), Query Frame = 2
Query:    2 DPEAFAELKVKEIKNGRLAMFSMFGFFVQAIVTGKGPLENLADHLADPVNNNAWAYATNFVPGK 193
            DPEAFAELKVKE+KNGRLAMFSMFGFFVQAIVTGKGP+ENLADHLADPVNNNAWA+ATNFVPGK
Sbjct:  204 DPEAFAELKVKELKNGRLAMFSMFGFFVQAIVTGKGPIENLADHLADPVNNNAWAFATNFVPGK 267          
BLAST of BQ623343 vs. ExPASy Swiss-Prot
Match: CB23_SOYBN (Chlorophyll a-b binding protein 3, chloroplastic OS=Glycine max GN=CAB3 PE=3 SV=1)

HSP 1 Score: 130.954 bits (328), Expect = 1.903e-30
Identity = 62/64 (96.88%), Postives = 63/64 (98.44%), Query Frame = 2
Query:    2 DPEAFAELKVKEIKNGRLAMFSMFGFFVQAIVTGKGPLENLADHLADPVNNNAWAYATNFVPGK 193
            DPEAFAELKVKE+KNGRLAMFSMFGFFVQAIVTGKGPLENLADHLA PVNNNAWAYATNFVPGK
Sbjct:  200 DPEAFAELKVKELKNGRLAMFSMFGFFVQAIVTGKGPLENLADHLAGPVNNNAWAYATNFVPGK 263          
BLAST of BQ623343 vs. ExPASy Swiss-Prot
Match: CB21_MAIZE (Chlorophyll a-b binding protein 1, chloroplastic OS=Zea mays GN=CAB1 PE=3 SV=1)

HSP 1 Score: 130.954 bits (328), Expect = 1.903e-30
Identity = 61/63 (96.83%), Postives = 63/63 (100.00%), Query Frame = 2
Query:    2 DPEAFAELKVKEIKNGRLAMFSMFGFFVQAIVTGKGPLENLADHLADPVNNNAWAYATNFVPG 190
            DPEAFAELKVKE+KNGRLAMFSMFGFFVQAIVTGKGPLENLADH+ADPVNNNAWAYATNFVPG
Sbjct:  199 DPEAFAELKVKELKNGRLAMFSMFGFFVQAIVTGKGPLENLADHIADPVNNNAWAYATNFVPG 261          
BLAST of BQ623343 vs. ExPASy Swiss-Prot
Match: CB2A_SPIOL (Chlorophyll a-b binding protein, chloroplastic OS=Spinacia oleracea PE=1 SV=1)

HSP 1 Score: 130.568 bits (327), Expect = 2.485e-30
Identity = 62/64 (96.88%), Postives = 63/64 (98.44%), Query Frame = 2
Query:    2 DPEAFAELKVKEIKNGRLAMFSMFGFFVQAIVTGKGPLENLADHLADPVNNNAWAYATNFVPGK 193
            DPEAFAELKVKEIKNGRLAMFSMFGFFVQAIVTGKGPLENLADHLADPVNNNAW +ATNFVPGK
Sbjct:  204 DPEAFAELKVKEIKNGRLAMFSMFGFFVQAIVTGKGPLENLADHLADPVNNNAWNFATNFVPGK 267          
BLAST of BQ623343 vs. ExPASy Swiss-Prot
Match: CB48_MAIZE (Chlorophyll a-b binding protein 48, chloroplastic OS=Zea mays GN=CAB48 PE=3 SV=1)

HSP 1 Score: 130.183 bits (326), Expect = 3.246e-30
Identity = 61/64 (95.31%), Postives = 62/64 (96.88%), Query Frame = 2
Query:    2 DPEAFAELKVKEIKNGRLAMFSMFGFFVQAIVTGKGPLENLADHLADPVNNNAWAYATNFVPGK 193
            DPE FAELKVKEIKNGRLAMFSMFGFFVQAIVTGKGP+ENLADHL DPVNNNAWAYATNFVPGK
Sbjct:  201 DPERFAELKVKEIKNGRLAMFSMFGFFVQAIVTGKGPIENLADHLTDPVNNNAWAYATNFVPGK 264          
BLAST of BQ623343 vs. ExPASy Swiss-Prot
Match: CB2A_PYRPY (Chlorophyll a-b binding protein 1A, chloroplastic OS=Pyrus pyrifolia PE=2 SV=1)

HSP 1 Score: 130.183 bits (326), Expect = 3.246e-30
Identity = 60/64 (93.75%), Postives = 64/64 (100.00%), Query Frame = 2
Query:    2 DPEAFAELKVKEIKNGRLAMFSMFGFFVQAIVTGKGPLENLADHLADPVNNNAWAYATNFVPGK 193
            DP+AFA++KVKEIKNGRLAMFSMFGFFVQAIVTGKGP+ENLADHLADPVNNNAWAYATNFVPGK
Sbjct:  215 DPDAFADVKVKEIKNGRLAMFSMFGFFVQAIVTGKGPIENLADHLADPVNNNAWAYATNFVPGK 278          
BLAST of BQ623343 vs. ExPASy Swiss-Prot
Match: CB22_HORVU (Chlorophyll a-b binding protein 2, chloroplastic OS=Hordeum vulgare GN=CAB2 PE=3 SV=1)

HSP 1 Score: 129.798 bits (325), Expect = 4.239e-30
Identity = 62/64 (96.88%), Postives = 63/64 (98.44%), Query Frame = 2
Query:    2 DPEAFAELKVKEIKNGRLAMFSMFGFFVQAIVTGKGPLENLADHLADPVNNNAWAYATNFVPGK 193
            D EAFAELKVKEIKNGRLAMFSMFGFFVQAIVTGKGPLENLADHLADPVNNNAWA+ATNFVPGK
Sbjct:  201 DAEAFAELKVKEIKNGRLAMFSMFGFFVQAIVTGKGPLENLADHLADPVNNNAWAFATNFVPGK 264          
BLAST of BQ623343 vs. ExPASy Swiss-Prot
Match: CB25_SOLLC (Chlorophyll a-b binding protein 5, chloroplastic (Fragment) OS=Solanum lycopersicum GN=CAB5 PE=2 SV=1)

HSP 1 Score: 128.642 bits (322), Expect = 9.444e-30
Identity = 60/64 (93.75%), Postives = 63/64 (98.44%), Query Frame = 2
Query:    2 DPEAFAELKVKEIKNGRLAMFSMFGFFVQAIVTGKGPLENLADHLADPVNNNAWAYATNFVPGK 193
            DPEAFAELKVKEIKNGRLAMFSMFGFFVQAIVTGKGP+ENL+DH+ADPV NNAWAYATNFVPGK
Sbjct:  174 DPEAFAELKVKEIKNGRLAMFSMFGFFVQAIVTGKGPIENLSDHIADPVANNAWAYATNFVPGK 237          
BLAST of BQ623343 vs. ExPASy Swiss-Prot
Match: CB21_LEMGI (Chlorophyll a-b binding protein of LHCII type I, chloroplastic OS=Lemna gibba PE=3 SV=1)

HSP 1 Score: 128.257 bits (321), Expect = 1.233e-29
Identity = 60/64 (93.75%), Postives = 63/64 (98.44%), Query Frame = 2
Query:    2 DPEAFAELKVKEIKNGRLAMFSMFGFFVQAIVTGKGPLENLADHLADPVNNNAWAYATNFVPGK 193
            DPEAFAELKVKEIKNGRLAMFSMFGFFVQAIVTGKGP+ENLADH+ADPV NNAWA+ATNFVPGK
Sbjct:  201 DPEAFAELKVKEIKNGRLAMFSMFGFFVQAIVTGKGPIENLADHIADPVANNAWAFATNFVPGK 264          
The following BLAST results are available for this feature:
BLAST of BQ623343 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 70
Match NameE-valueIdentityDescription
CB21_PETSP1.457e-3096.88Chlorophyll a-b binding protein 13, chloroplastic ... [more]
CB21_ARATH1.457e-3095.31Chlorophyll a-b binding protein 165/180, chloropla... [more]
CB23_SOYBN1.903e-3096.88Chlorophyll a-b binding protein 3, chloroplastic O... [more]
CB21_MAIZE1.903e-3096.83Chlorophyll a-b binding protein 1, chloroplastic O... [more]
CB2A_SPIOL2.485e-3096.88Chlorophyll a-b binding protein, chloroplastic OS=... [more]
CB48_MAIZE3.246e-3095.31Chlorophyll a-b binding protein 48, chloroplastic ... [more]
CB2A_PYRPY3.246e-3093.75Chlorophyll a-b binding protein 1A, chloroplastic ... [more]
CB22_HORVU4.239e-3096.88Chlorophyll a-b binding protein 2, chloroplastic O... [more]
CB25_SOLLC9.444e-3093.75Chlorophyll a-b binding protein 5, chloroplastic (... [more]
CB21_LEMGI1.233e-2993.75Chlorophyll a-b binding protein of LHCII type I, c... [more]

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Properties
Property NameValue
Genbank descriptionUSDA-FP_00434 Ridge pineapple sweet orange entire seedling Citrus sinensis cDNA clone USDA-FP_00434 5, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>BQ623343 ID=BQ623343; Name=BQ623343; organism=Citrus sinensis; type=EST; length=303bp
TGACCCGGAGGCTTTTGCTGAGCTCAAGGTTAAGGAAATCAAGAATGGAA
GGTTGGCTATGTTCTCCATGTTTGGTTTCTTCGTTCAGGCCATTGTCACC
GGCAAGGGACCGTTAGAGAACTTGGCCGACCACTTGGCTGACCCTGTCAA
TAACAATGCCTGGGCCTACGCCACCAACTTTGTCCCCGGAAAGTGAGCTT
CGGTTGATAAGAGTTTTTCTCTTTTCGGTTTCTTGGATATCATGTAAATC
TGTTGTGAGCTCATGGAAGCTTTAATTTGAGTTGTGATTATTTATAAAAT
GCT
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