BQ623343

Overview
NameBQ623343
Unique NameBQ623343
TypeEST
OrganismCitrus sinensis (Sweet orange)
Sequence length303
Libraries
Library NameType
Ridge pineapple sweet orange entire seedlingcdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Alignments
Feature NameTypeLocationAnalysis
Csv1_Contig9540 contig Csv1_Contig9540:697..999. BLAST: Citrus Unigene V1 Contigs to Prunus persica proteins V1
Homology
BLAST of BQ623343 vs. ExPASy Swiss-Prot
Match: CB22_SOYBN (Chlorophyll a-b binding protein 2, chloroplastic OS=Glycine max GN=CAB2 PE=3 SV=1)

HSP 1 Score: 124.79 bits (312), Expect = 1.364e-28
Identity = 59/64 (92.19%), Postives = 60/64 (93.75%), Query Frame = 2
Query:    2 DPEAFAELKVKEIKNGRLAMFSMFGFFVQAIVTGKGPLENLADHLADPVNNNAWAYATNFVPGK 193
            DPEA AELKVKE+KNGRLAMFSMFGFFVQAIVTGKGPLENLADHLADPVNNNAWAYAT   PGK
Sbjct:  193 DPEALAELKVKELKNGRLAMFSMFGFFVQAIVTGKGPLENLADHLADPVNNNAWAYATKLCPGK 256          
BLAST of BQ623343 vs. ExPASy Swiss-Prot
Match: CB22_PINSY (Chlorophyll a-b binding protein type 2 member 2 (Fragment) OS=Pinus sylvestris PE=2 SV=1)

HSP 1 Score: 124.79 bits (312), Expect = 1.364e-28
Identity = 60/64 (93.75%), Postives = 61/64 (95.31%), Query Frame = 2
Query:    2 DPEAFAELKVKEIKNGRLAMFSMFGFFVQAIVTGKGPLENLADHLADPVNNNAWAYATNFVPGK 193
            DPEA AELKVKEIKNGRLAMFSMFGFFVQAIVTGKGP+ENL DHLADPV NNAWAYATNFVPGK
Sbjct:   87 DPEAKAELKVKEIKNGRLAMFSMFGFFVQAIVTGKGPIENLYDHLADPVANNAWAYATNFVPGK 150          
BLAST of BQ623343 vs. ExPASy Swiss-Prot
Match: CB23_ORYSJ (Chlorophyll a-b binding protein, chloroplastic OS=Oryza sativa subsp. japonica GN=RCABP89 PE=2 SV=1)

HSP 1 Score: 123.635 bits (309), Expect = 3.038e-28
Identity = 57/64 (89.06%), Postives = 61/64 (95.31%), Query Frame = 2
Query:    2 DPEAFAELKVKEIKNGRLAMFSMFGFFVQAIVTGKGPLENLADHLADPVNNNAWAYATNFVPGK 193
            DP+ FAELKVKE+KNGRLAMFSMFGFFVQAIVTGKGP+ENL DH+ADPV NNAWAYATNFVPGK
Sbjct:  200 DPDTFAELKVKELKNGRLAMFSMFGFFVQAIVTGKGPIENLFDHVADPVANNAWAYATNFVPGK 263          
BLAST of BQ623343 vs. ExPASy Swiss-Prot
Match: CB23_ORYSI (Chlorophyll a-b binding protein, chloroplastic OS=Oryza sativa subsp. indica GN=OsI_012078 PE=2 SV=1)

HSP 1 Score: 123.635 bits (309), Expect = 3.038e-28
Identity = 57/64 (89.06%), Postives = 61/64 (95.31%), Query Frame = 2
Query:    2 DPEAFAELKVKEIKNGRLAMFSMFGFFVQAIVTGKGPLENLADHLADPVNNNAWAYATNFVPGK 193
            DP+ FAELKVKE+KNGRLAMFSMFGFFVQAIVTGKGP+ENL DH+ADPV NNAWAYATNFVPGK
Sbjct:  200 DPDTFAELKVKELKNGRLAMFSMFGFFVQAIVTGKGPIENLFDHVADPVANNAWAYATNFVPGK 263          
BLAST of BQ623343 vs. ExPASy Swiss-Prot
Match: CB21_WHEAT (Chlorophyll a-b binding protein, chloroplastic OS=Triticum aestivum GN=WHAB1.6 PE=3 SV=1)

HSP 1 Score: 123.25 bits (308), Expect = 3.968e-28
Identity = 58/63 (92.06%), Postives = 61/63 (96.83%), Query Frame = 2
Query:    5 PEAFAELKVKEIKNGRLAMFSMFGFFVQAIVTGKGPLENLADHLADPVNNNAWAYATNFVPGK 193
            P+AFAELKVKEIKNGRLAMFSMFGFFVQAIVTGKGPLE+LADH+ADPVNNNAW  ATNFVPGK
Sbjct:  204 PQAFAELKVKEIKNGRLAMFSMFGFFVQAIVTGKGPLEDLADHIADPVNNNAWLIATNFVPGK 266          
BLAST of BQ623343 vs. ExPASy Swiss-Prot
Match: CB215_PEA (Chlorophyll a-b binding protein 215, chloroplastic OS=Pisum sativum GN=CAB215 PE=1 SV=1)

HSP 1 Score: 119.783 bits (299), Expect = 4.387e-27
Identity = 54/64 (84.38%), Postives = 62/64 (96.88%), Query Frame = 2
Query:    2 DPEAFAELKVKEIKNGRLAMFSMFGFFVQAIVTGKGPLENLADHLADPVNNNAWAYATNFVPGK 193
            DP++FAELKVKE+KNGRLAMFSMFGFFVQAIVTGKGP++NL DH+ADPV NNAWA+ATNFVPG+
Sbjct:  202 DPDSFAELKVKELKNGRLAMFSMFGFFVQAIVTGKGPIQNLYDHVADPVANNAWAFATNFVPGQ 265          
BLAST of BQ623343 vs. ExPASy Swiss-Prot
Match: CB23_SOLLC (Chlorophyll a-b binding protein 13, chloroplastic OS=Solanum lycopersicum GN=CAB13 PE=1 SV=1)

HSP 1 Score: 115.546 bits (288), Expect = 8.273e-26
Identity = 55/63 (87.30%), Postives = 56/63 (88.89%), Query Frame = 2
Query:    2 DPEAFAELKVKEIKNGRLAMFSMFGFFVQAIVTGKGPLENLADHLADPVNNNAWAYATNFVPG 190
            DP  FAELKVKEIKNGRLAMFSMFGFFVQAIVTGKGPLENL DHL +PV NNAW YAT FVPG
Sbjct:  202 DPTTFAELKVKEIKNGRLAMFSMFGFFVQAIVTGKGPLENLLDHLDNPVANNAWVYATKFVPG 264          
BLAST of BQ623343 vs. ExPASy Swiss-Prot
Match: CB2_PHYPA (Chlorophyll a-b binding protein, chloroplastic OS=Physcomitrella patens PE=3 SV=1)

HSP 1 Score: 114.39 bits (285), Expect = 1.843e-25
Identity = 55/63 (87.30%), Postives = 56/63 (88.89%), Query Frame = 2
Query:    2 DPEAFAELKVKEIKNGRLAMFSMFGFFVQAIVTGKGPLENLADHLADPVNNNAWAYATNFVPG 190
            DP+ FAELKVKEIKNGRLAMFSMFGFFVQAIVTGKGPLENL DHLADPV NNAWAYA    PG
Sbjct:  205 DPDTFAELKVKEIKNGRLAMFSMFGFFVQAIVTGKGPLENLNDHLADPVANNAWAYAPTSPPG 267          
BLAST of BQ623343 vs. ExPASy Swiss-Prot
Match: CB23_HORVU (Chlorophyll a-b binding protein of LHCII type III, chloroplastic OS=Hordeum vulgare GN=LHBC PE=2 SV=1)

HSP 1 Score: 113.62 bits (283), Expect = 3.144e-25
Identity = 54/63 (85.71%), Postives = 55/63 (87.30%), Query Frame = 2
Query:    2 DPEAFAELKVKEIKNGRLAMFSMFGFFVQAIVTGKGPLENLADHLADPVNNNAWAYATNFVPG 190
            DP  FAELKVKEIKNGRLAMFSMFGFFVQAIVTGKGPLENL DHL DPV NNAW +AT F PG
Sbjct:  205 DPVTFAELKVKEIKNGRLAMFSMFGFFVQAIVTGKGPLENLFDHLDDPVANNAWVFATKFAPG 267          
BLAST of BQ623343 vs. ExPASy Swiss-Prot
Match: CB2_CHLMO (Chlorophyll a-b binding protein of LHCII type I, chloroplastic OS=Chlamydomonas moewusii PE=2 SV=1)

HSP 1 Score: 107.071 bits (266), Expect = 2.943e-23
Identity = 51/62 (82.26%), Postives = 55/62 (88.71%), Query Frame = 2
Query:    2 DPEAFAELKVKEIKNGRLAMFSMFGFFVQAIVTGKGPLENLADHLADPVNNNAWAYATNFVP 187
            DP+ FAELKVKEIKNGRLAMFS FGFFVQAIVTGKGP++NLADHLADP  NNA+A AT F P
Sbjct:  193 DPDTFAELKVKEIKNGRLAMFSCFGFFVQAIVTGKGPIQNLADHLADPGTNNAFAAATKFTP 254          
The following BLAST results are available for this feature:
BLAST of BQ623343 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 70
Match NameE-valueIdentityDescription
CB22_SOYBN1.364e-2892.19Chlorophyll a-b binding protein 2, chloroplastic O... [more]
CB22_PINSY1.364e-2893.75Chlorophyll a-b binding protein type 2 member 2 (F... [more]
CB23_ORYSJ3.038e-2889.06Chlorophyll a-b binding protein, chloroplastic OS=... [more]
CB23_ORYSI3.038e-2889.06Chlorophyll a-b binding protein, chloroplastic OS=... [more]
CB21_WHEAT3.968e-2892.06Chlorophyll a-b binding protein, chloroplastic OS=... [more]
CB215_PEA4.387e-2784.38Chlorophyll a-b binding protein 215, chloroplastic... [more]
CB23_SOLLC8.273e-2687.30Chlorophyll a-b binding protein 13, chloroplastic ... [more]
CB2_PHYPA1.843e-2587.30Chlorophyll a-b binding protein, chloroplastic OS=... [more]
CB23_HORVU3.144e-2585.71Chlorophyll a-b binding protein of LHCII type III,... [more]
CB2_CHLMO2.943e-2382.26Chlorophyll a-b binding protein of LHCII type I, c... [more]

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Properties
Property NameValue
Genbank descriptionUSDA-FP_00434 Ridge pineapple sweet orange entire seedling Citrus sinensis cDNA clone USDA-FP_00434 5, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>BQ623343 ID=BQ623343; Name=BQ623343; organism=Citrus sinensis; type=EST; length=303bp
TGACCCGGAGGCTTTTGCTGAGCTCAAGGTTAAGGAAATCAAGAATGGAA
GGTTGGCTATGTTCTCCATGTTTGGTTTCTTCGTTCAGGCCATTGTCACC
GGCAAGGGACCGTTAGAGAACTTGGCCGACCACTTGGCTGACCCTGTCAA
TAACAATGCCTGGGCCTACGCCACCAACTTTGTCCCCGGAAAGTGAGCTT
CGGTTGATAAGAGTTTTTCTCTTTTCGGTTTCTTGGATATCATGTAAATC
TGTTGTGAGCTCATGGAAGCTTTAATTTGAGTTGTGATTATTTATAAAAT
GCT
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