BQ623343

Overview
NameBQ623343
Unique NameBQ623343
TypeEST
OrganismCitrus sinensis (Sweet orange)
Sequence length303
Libraries
Library NameType
Ridge pineapple sweet orange entire seedlingcdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Alignments
Feature NameTypeLocationAnalysis
Csv1_Contig9540 contig Csv1_Contig9540:697..999. BLAST: Citrus Unigene V1 Contigs to Prunus persica proteins V1
Homology
BLAST of BQ623343 vs. ExPASy Swiss-Prot
Match: CB2_DUNSA (Chlorophyll a-b binding protein of LHCII type I, chloroplastic OS=Dunaliella salina PE=2 SV=1)

HSP 1 Score: 105.916 bits (263), Expect = 6.555e-23
Identity = 49/62 (79.03%), Postives = 54/62 (87.10%), Query Frame = 2
Query:    2 DPEAFAELKVKEIKNGRLAMFSMFGFFVQAIVTGKGPLENLADHLADPVNNNAWAYATNFVP 187
            DP+ FAELKVKEIKNGRLAMF+  GFFVQAIVTGKGP+ENL DHLA+P  NNA+AYAT F P
Sbjct:  211 DPDTFAELKVKEIKNGRLAMFACLGFFVQAIVTGKGPIENLTDHLANPAENNAFAYATKFTP 272          
BLAST of BQ623343 vs. ExPASy Swiss-Prot
Match: CB2_CHLRE (Chlorophyll a-b binding protein of LHCII type I, chloroplastic OS=Chlamydomonas reinhardtii GN=cabII-1 PE=3 SV=1)

HSP 1 Score: 104.375 bits (259), Expect = 1.907e-22
Identity = 49/62 (79.03%), Postives = 55/62 (88.71%), Query Frame = 2
Query:    2 DPEAFAELKVKEIKNGRLAMFSMFGFFVQAIVTGKGPLENLADHLADPVNNNAWAYATNFVP 187
            DP+ FAELKVKEIKNGRLA FSMFGFFVQAIVTGKGP++NL DHLA+P  NNA+A+AT F P
Sbjct:  190 DPDTFAELKVKEIKNGRLASFSMFGFFVQAIVTGKGPVQNLDDHLANPTVNNAFAFATKFTP 251          
BLAST of BQ623343 vs. ExPASy Swiss-Prot
Match: CB2_DUNTE (Chlorophyll a-b binding protein of LHCII type I, chloroplastic OS=Dunaliella tertiolecta PE=2 SV=1)

HSP 1 Score: 102.834 bits (255), Expect = 5.550e-22
Identity = 49/63 (77.78%), Postives = 53/63 (84.13%), Query Frame = 2
Query:    2 DPEAFAELKVKEIKNGRLAMFSMFGFFVQAIVTGKGPLENLADHLADPVNNNAWAYATNFVPG 190
            DP+ FAELKVKEIKNGRLAMFS  GFFVQAIVTGKGP++NL DHLADP  N A+A AT F PG
Sbjct:  190 DPDTFAELKVKEIKNGRLAMFSCLGFFVQAIVTGKGPVQNLTDHLADPTVNKAFASATKFTPG 252          
BLAST of BQ623343 vs. ExPASy Swiss-Prot
Match: CB2_MALDO (Chlorophyll a-b binding protein AB10, chloroplastic OS=Malus domestica PE=3 SV=1)

HSP 1 Score: 98.2117 bits (243), Expect = 1.367e-20
Identity = 50/63 (79.37%), Postives = 53/63 (84.13%), Query Frame = 2
Query:    2 DPEAFAELKVKEIKNGRLAMFSMFGFFVQAIVTGKGPLENLADHLADPVNNNAWAYATNFVPG 190
            D EAFAELKVKE+KNGRLAMFSMFGFFVQAIV+ K  LENLADHL   VNNNA +  TNFVPG
Sbjct:  205 DTEAFAELKVKELKNGRLAMFSMFGFFVQAIVSRKDRLENLADHLGWTVNNNALSNVTNFVPG 267          
BLAST of BQ623343 vs. ExPASy Swiss-Prot
Match: CB26_ARATH (Chlorophyll a-b binding protein CP26, chloroplastic OS=Arabidopsis thaliana GN=LHCB5 PE=2 SV=1)

HSP 1 Score: 82.8037 bits (203), Expect = 5.943e-16
Identity = 39/52 (75.00%), Postives = 44/52 (84.62%), Query Frame = 2
Query:    2 DPEAFAELKVKEIKNGRLAMFSMFGFFVQAIVTGKGPLENLADHLADPVNNN 157
            DPE  A LKVKEIKNGRLAMF+M GFF+QA VTG+GP+ENLA HL+DP  NN
Sbjct:  214 DPEQGALLKVKEIKNGRLAMFAMLGFFIQAYVTGEGPVENLAKHLSDPFGNN 265          
BLAST of BQ623343 vs. ExPASy Swiss-Prot
Match: CB13_SOLLC (Chlorophyll a-b binding protein 8, chloroplastic OS=Solanum lycopersicum GN=CAB8 PE=3 SV=1)

HSP 1 Score: 79.337 bits (194), Expect = 6.571e-15
Identity = 35/52 (67.31%), Postives = 44/52 (84.62%), Query Frame = 2
Query:    2 DPEAFAELKVKEIKNGRLAMFSMFGFFVQAIVTGKGPLENLADHLADPVNNN 157
            D ++  ELK+KEIKNGRLAM ++ G+F+QA+VTG GP +NL DHLADPVNNN
Sbjct:  214 DEKSMKELKLKEIKNGRLAMLAILGYFIQALVTGVGPYQNLLDHLADPVNNN 265          
BLAST of BQ623343 vs. ExPASy Swiss-Prot
Match: CB21_EUGGR (Chlorophyll a-b binding protein of LHCII type 1 (Fragment) OS=Euglena gracilis PE=2 SV=1)

HSP 1 Score: 77.7962 bits (190), Expect = 1.912e-14
Identity = 39/63 (61.90%), Postives = 44/63 (69.84%), Query Frame = 2
Query:    2 DPEAFAELKVKEIKNGRLAMFSMFGFFVQAIVTGKGPLENLADHLADP-VNNNAWAYATNFVP 187
            DP+ F ELKVKEIKNGRLAM  M GF+ QAIVTG+GP+EN   HL DP  +N   A  T F P
Sbjct:   59 DPDTFPELKVKEIKNGRLAMSGMLGFYAQAIVTGEGPVENWLYHLQDPSAHNGLTALVTQFAP 121          
BLAST of BQ623343 vs. ExPASy Swiss-Prot
Match: CB23_PEA (Chlorophyll a-b binding protein 3, chloroplastic OS=Pisum sativum GN=lhca3 PE=1 SV=1)

HSP 1 Score: 76.2554 bits (186), Expect = 5.562e-14
Identity = 32/52 (61.54%), Postives = 43/52 (82.69%), Query Frame = 2
Query:    2 DPEAFAELKVKEIKNGRLAMFSMFGFFVQAIVTGKGPLENLADHLADPVNNN 157
            D ++  ELK+KE+KNGRLAM ++ G+F+Q +VTG GP +NL DH+ADPVNNN
Sbjct:  216 DEKSLKELKLKEVKNGRLAMLAILGYFIQGLVTGVGPYQNLLDHVADPVNNN 267          
BLAST of BQ623343 vs. ExPASy Swiss-Prot
Match: CB11_SOLLC (Chlorophyll a-b binding protein 6A, chloroplastic OS=Solanum lycopersicum GN=CAB6A PE=2 SV=1)

HSP 1 Score: 68.1662 bits (165), Expect = 1.515e-11
Identity = 35/53 (66.04%), Postives = 40/53 (75.47%), Query Frame = 2
Query:    2 DPEAFAELKVKEIKNGRLAMFSMFGFFV-QAIVTGKGPLENLADHLADPVNNN 157
            DP  F ELKVKEIKNGRLA+ ++ GF V Q+   G GPLENLA HLADP +NN
Sbjct:  181 DPAKFEELKVKEIKNGRLALLAIVGFCVQQSAYLGTGPLENLATHLADPWHNN 233          
BLAST of BQ623343 vs. ExPASy Swiss-Prot
Match: CB121_HORVU (Chlorophyll a-b binding protein 1B-21, chloroplastic OS=Hordeum vulgare GN=LHC Ib-21 PE=1 SV=1)

HSP 1 Score: 67.781 bits (164), Expect = 1.978e-11
Identity = 35/53 (66.04%), Postives = 39/53 (73.58%), Query Frame = 2
Query:    2 DPEAFAELKVKEIKNGRLAMFSMFGFFV-QAIVTGKGPLENLADHLADPVNNN 157
            DP  F ELK+KEIKNGRLAM +  GF V Q+   G GPLENLA HLADP +NN
Sbjct:  180 DPAKFEELKLKEIKNGRLAMLAFVGFCVQQSAYPGTGPLENLATHLADPWHNN 232          
The following BLAST results are available for this feature:
BLAST of BQ623343 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 70
Match NameE-valueIdentityDescription
CB2_DUNSA6.555e-2379.03Chlorophyll a-b binding protein of LHCII type I, c... [more]
CB2_CHLRE1.907e-2279.03Chlorophyll a-b binding protein of LHCII type I, c... [more]
CB2_DUNTE5.550e-2277.78Chlorophyll a-b binding protein of LHCII type I, c... [more]
CB2_MALDO1.367e-2079.37Chlorophyll a-b binding protein AB10, chloroplasti... [more]
CB26_ARATH5.943e-1675.00Chlorophyll a-b binding protein CP26, chloroplasti... [more]
CB13_SOLLC6.571e-1567.31Chlorophyll a-b binding protein 8, chloroplastic O... [more]
CB21_EUGGR1.912e-1461.90Chlorophyll a-b binding protein of LHCII type 1 (F... [more]
CB23_PEA5.562e-1461.54Chlorophyll a-b binding protein 3, chloroplastic O... [more]
CB11_SOLLC1.515e-1166.04Chlorophyll a-b binding protein 6A, chloroplastic ... [more]
CB121_HORVU1.978e-1166.04Chlorophyll a-b binding protein 1B-21, chloroplast... [more]

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Properties
Property NameValue
Genbank descriptionUSDA-FP_00434 Ridge pineapple sweet orange entire seedling Citrus sinensis cDNA clone USDA-FP_00434 5, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>BQ623343 ID=BQ623343; Name=BQ623343; organism=Citrus sinensis; type=EST; length=303bp
TGACCCGGAGGCTTTTGCTGAGCTCAAGGTTAAGGAAATCAAGAATGGAA
GGTTGGCTATGTTCTCCATGTTTGGTTTCTTCGTTCAGGCCATTGTCACC
GGCAAGGGACCGTTAGAGAACTTGGCCGACCACTTGGCTGACCCTGTCAA
TAACAATGCCTGGGCCTACGCCACCAACTTTGTCCCCGGAAAGTGAGCTT
CGGTTGATAAGAGTTTTTCTCTTTTCGGTTTCTTGGATATCATGTAAATC
TGTTGTGAGCTCATGGAAGCTTTAATTTGAGTTGTGATTATTTATAAAAT
GCT
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