BQ623351

Overview
NameBQ623351
Unique NameBQ623351
TypeEST
OrganismCitrus sinensis (Sweet orange)
Sequence length706
Libraries
Library NameType
Ridge pineapple sweet orange entire seedlingcdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Alignments
Feature NameTypeLocationAnalysis
Csv1_Contig10453 contig Csv1_Contig10453:309..1015. BLAST: Citrus Unigene V1 Contigs to Prunus persica proteins V1
Homology
BLAST of BQ623351 vs. ExPASy Swiss-Prot
Match: ERF76_ARATH (Ethylene-responsive transcription factor 11 OS=Arabidopsis thaliana GN=ERF11 PE=2 SV=1)

HSP 1 Score: 96.2857 bits (238), Expect = 1.726e-19
Identity = 48/74 (64.86%), Postives = 54/74 (72.97%), Query Frame = 1
Query:  355 TAGLAARDRDQAKVVHYRGVRTRPWGKYAAEIRDPKKNGARVWLGTYDTPEGAALAYDKAAFEMRGSKAKLNFP 576
            T   AA   ++   V YRGVR RPWG+YAAEIRDP K  +RVWLGT+DTPE AA AYDK A E RG+KAK NFP
Sbjct:    4 TVKTAAVKTNEGNGVRYRGVRKRPWGRYAAEIRDPFKK-SRVWLGTFDTPEEAARAYDKRAIEFRGAKAKTNFP 76          
BLAST of BQ623351 vs. ExPASy Swiss-Prot
Match: EF106_ARATH (Ethylene-responsive transcription factor ERF106 OS=Arabidopsis thaliana GN=ERF106 PE=2 SV=1)

HSP 1 Score: 95.9005 bits (237), Expect = 2.255e-19
Identity = 44/75 (58.67%), Postives = 55/75 (73.33%), Query Frame = 1
Query:  352 QTAGLAARDRDQAKVVHYRGVRTRPWGKYAAEIRDPKKNGARVWLGTYDTPEGAALAYDKAAFEMRGSKAKLNFP 576
            Q+   A R  ++    HYRGVR RPWGK+AAEIRDP K G+R+WLGT+++   AA AYD AAF++RG KA LNFP
Sbjct:   93 QSVKKAERFEEEVDARHYRGVRRRPWGKFAAEIRDPAKKGSRIWLGTFESDVDAARAYDCAAFKLRGRKAVLNFP 167          
BLAST of BQ623351 vs. ExPASy Swiss-Prot
Match: ERF81_ARATH (Ethylene-responsive transcription factor 12 OS=Arabidopsis thaliana GN=ERF12 PE=2 SV=1)

HSP 1 Score: 95.5153 bits (236), Expect = 2.945e-19
Identity = 47/63 (74.60%), Postives = 51/63 (80.95%), Query Frame = 1
Query:  388 AKVVHYRGVRTRPWGKYAAEIRDPKKNGARVWLGTYDTPEGAALAYDKAAFEMRGSKAKLNFP 576
            A+ VHYRGVR RPWG+YAAEIRDP K   RVWLGT+DTPE AALAYD AA  +RG KAK NFP
Sbjct:    7 AREVHYRGVRKRPWGRYAAEIRDPWKK-TRVWLGTFDTPEEAALAYDGAARFLRGIKAKTNFP 68          
BLAST of BQ623351 vs. ExPASy Swiss-Prot
Match: ERF4_TOBAC (Ethylene-responsive transcription factor 4 OS=Nicotiana tabacum GN=ERF4 PE=1 SV=1)

HSP 1 Score: 95.1301 bits (235), Expect = 3.846e-19
Identity = 47/65 (72.31%), Postives = 50/65 (76.92%), Query Frame = 1
Query:  382 DQAKVVHYRGVRTRPWGKYAAEIRDPKKNGARVWLGTYDTPEGAALAYDKAAFEMRGSKAKLNFP 576
            D  K VHYRGVR RPWG+YAAEIRDP K  +RVWLGT+DT E AA AYD AA E RG KAK NFP
Sbjct:   20 DGVKEVHYRGVRKRPWGRYAAEIRDPGKK-SRVWLGTFDTAEEAAKAYDTAAREFRGPKAKTNFP 83          
BLAST of BQ623351 vs. ExPASy Swiss-Prot
Match: EF103_ARATH (Ethylene-responsive transcription factor 6 OS=Arabidopsis thaliana GN=ERF6 PE=2 SV=2)

HSP 1 Score: 95.1301 bits (235), Expect = 3.846e-19
Identity = 43/59 (72.88%), Postives = 48/59 (81.36%), Query Frame = 1
Query:  400 HYRGVRTRPWGKYAAEIRDPKKNGARVWLGTYDTPEGAALAYDKAAFEMRGSKAKLNFP 576
            HYRGVR RPWGK+AAEIRDP + G RVWLGT++T   AA AYDK AF +RGSKA LNFP
Sbjct:  136 HYRGVRMRPWGKFAAEIRDPTRRGTRVWLGTFETAIEAARAYDKEAFRLRGSKAILNFP 194          
BLAST of BQ623351 vs. ExPASy Swiss-Prot
Match: ERF98_ARATH (Ethylene-responsive transcription factor ERF098 OS=Arabidopsis thaliana GN=ERF098 PE=2 SV=1)

HSP 1 Score: 94.7449 bits (234), Expect = 5.023e-19
Identity = 45/81 (55.56%), Postives = 62/81 (76.54%), Query Frame = 1
Query:  337 MVTYHQTAGLAARDRDQAKVVHYRGVRTRPWGKYAAEIRDPKKNGARVWLGTYDTPEGAALAYDKAAFEMRGSKAKLNFPH 579
            M + ++++   ++D  QA+   +RGVR RPWGK+AAEIRDP +NGAR+WLGT++T E AA AYD+AAF +RG  A LNFP+
Sbjct:    1 MESSNRSSNNQSQDDKQAR---FRGVRRRPWGKFAAEIRDPSRNGARLWLGTFETAEEAARAYDRAAFNLRGHLAILNFPN 78          
BLAST of BQ623351 vs. ExPASy Swiss-Prot
Match: ERF94_ARATH (Ethylene-responsive transcription factor ERF094 OS=Arabidopsis thaliana GN=ERF094 PE=2 SV=1)

HSP 1 Score: 93.5893 bits (231), Expect = 1.119e-18
Identity = 45/73 (61.64%), Postives = 56/73 (76.71%), Query Frame = 1
Query:  358 AGLAARDRDQAKVVHYRGVRTRPWGKYAAEIRDPKKNGARVWLGTYDTPEGAALAYDKAAFEMRGSKAKLNFP 576
            A +AA + +++    YRGVR RPWGK+AAEIRD  + G RVWLGT+DT E AALAYD+AAF ++GS A LNFP
Sbjct:   71 ATVAAEEEEKS----YRGVRKRPWGKFAAEIRDSTRKGIRVWLGTFDTAEAAALAYDQAAFALKGSLAVLNFP 139          
BLAST of BQ623351 vs. ExPASy Swiss-Prot
Match: ERF80_ARATH (Ethylene-responsive transcription factor 9 OS=Arabidopsis thaliana GN=ERF9 PE=2 SV=1)

HSP 1 Score: 93.5893 bits (231), Expect = 1.119e-18
Identity = 46/62 (74.19%), Postives = 49/62 (79.03%), Query Frame = 1
Query:  391 KVVHYRGVRTRPWGKYAAEIRDPKKNGARVWLGTYDTPEGAALAYDKAAFEMRGSKAKLNFP 576
            K VH+RGVR RPWG+YAAEIRDP K   RVWLGT+DT E AA AYD AA E RGSKAK NFP
Sbjct:   29 KEVHFRGVRKRPWGRYAAEIRDPGKK-TRVWLGTFDTAEEAARAYDTAAREFRGSKAKTNFP 89          
BLAST of BQ623351 vs. ExPASy Swiss-Prot
Match: ERF4_NICSY (Ethylene-responsive transcription factor 4 OS=Nicotiana sylvestris GN=ERF4 PE=2 SV=1)

HSP 1 Score: 93.5893 bits (231), Expect = 1.119e-18
Identity = 46/62 (74.19%), Postives = 49/62 (79.03%), Query Frame = 1
Query:  391 KVVHYRGVRTRPWGKYAAEIRDPKKNGARVWLGTYDTPEGAALAYDKAAFEMRGSKAKLNFP 576
            K VHYRGVR RPWG+YAAEIRDP K  +RVWLGT+DT E AA AYD AA E RG KAK NFP
Sbjct:   23 KEVHYRGVRKRPWGRYAAEIRDPGKK-SRVWLGTFDTAEEAAKAYDTAAREFRGPKAKTNFP 83          
BLAST of BQ623351 vs. ExPASy Swiss-Prot
Match: RAP23_ARATH (Ethylene-responsive transcription factor RAP2-3 OS=Arabidopsis thaliana GN=RAP2-3 PE=1 SV=2)

HSP 1 Score: 93.2041 bits (230), Expect = 1.461e-18
Identity = 47/74 (63.51%), Postives = 56/74 (75.68%), Query Frame = 1
Query:  403 YRGVRTRPWGKYAAEIRDPKKNGARVWLGTYDTPEGAALAYDKAAFEMRGSKAKLNFPHLLGRGNFKPGRVTPP 624
            YRG+R RPWGK+AAEIRDP+K G RVWLGT++T E AA+AYD AA ++RG KAKLNFP L    +  P   TPP
Sbjct:   79 YRGIRKRPWGKWAAEIRDPRK-GVRVWLGTFNTAEEAAMAYDVAAKQIRGDKAKLNFPDL---HHPPPPNYTPP 148          
The following BLAST results are available for this feature:
BLAST of BQ623351 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 111
Match NameE-valueIdentityDescription
ERF76_ARATH1.726e-1964.86Ethylene-responsive transcription factor 11 OS=Ara... [more]
EF106_ARATH2.255e-1958.67Ethylene-responsive transcription factor ERF106 OS... [more]
ERF81_ARATH2.945e-1974.60Ethylene-responsive transcription factor 12 OS=Ara... [more]
ERF4_TOBAC3.846e-1972.31Ethylene-responsive transcription factor 4 OS=Nico... [more]
EF103_ARATH3.846e-1972.88Ethylene-responsive transcription factor 6 OS=Arab... [more]
ERF98_ARATH5.023e-1955.56Ethylene-responsive transcription factor ERF098 OS... [more]
ERF94_ARATH1.119e-1861.64Ethylene-responsive transcription factor ERF094 OS... [more]
ERF80_ARATH1.119e-1874.19Ethylene-responsive transcription factor 9 OS=Arab... [more]
ERF4_NICSY1.119e-1874.19Ethylene-responsive transcription factor 4 OS=Nico... [more]
RAP23_ARATH1.461e-1863.51Ethylene-responsive transcription factor RAP2-3 OS... [more]

Pages

back to top
Properties
Property NameValue
Genbank descriptionUSDA-FP_00442 Ridge pineapple sweet orange entire seedling Citrus sinensis cDNA clone USDA-FP_00442 5, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>BQ623351 ID=BQ623351; Name=BQ623351; organism=Citrus sinensis; type=EST; length=706bp
TTTTCAGAATCGGATTTTGATCTTCTTCAAAATCTTCTCGAGGACGTAAA
CACAGCCTCATCTTTTGAATCGGATTACTTAAACAATGCACCCTCCGTGT
ACTCACCAACTTCGAGCTTCGGCAGTGCCGTCTTTGATTTTCCACTACAA
GTAACAGGTAATGTTGTTATTAACAATAACAACAACTACCCAATCCCTTC
CTATGGCTGCTATGATCATCCCAAAGCCTTAAACGACGCCGTTGACAGCG
TGGGTTGGATTTCCTTTGATCATCATCAAGCTGATCAGGATGATCAAGCA
ATAAGCGAAGCCGCCGCAGCCGCCGCTACCCTTGATATGGTGACTTACCA
CCAGACGGCGGGGTTGGCAGCACGTGATCGTGATCAGGCGAAGGTGGTGC
ATTACAGGGGGGTGAGGACGAGGCCATGGGGGAAATATGCGGCTGAGATT
AGAGACCCTAAGAAGAACGGGGCACGTGTTTGGCTTGGCACTTATGATAC
CCCTGAGGGCGCAGCCTTGGCTTATGATAAAGCCGCGTTCGAGATGCGTG
GCTCTAAAGCTAAGCTTAATTTTCCTCACTTACTTGGCAGGGGTAATTTT
AAGCCCGGTCGTGTCACACCACCAACACCACTAAGCGTGGCTCACCAGAG
TCCGAGCCTGAGCTTTCTCCTACTTCTTCATCTTCTTCCTCTTCTTCGGC
TACTTC
back to top