BQ623351

Overview
NameBQ623351
Unique NameBQ623351
TypeEST
OrganismCitrus sinensis (Sweet orange)
Sequence length706
Libraries
Library NameType
Ridge pineapple sweet orange entire seedlingcdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Alignments
Feature NameTypeLocationAnalysis
Csv1_Contig10453 contig Csv1_Contig10453:309..1015. BLAST: Citrus Unigene V1 Contigs to Prunus persica proteins V1
Homology
BLAST of BQ623351 vs. ExPASy Swiss-Prot
Match: ERF86_ARATH (Ethylene-responsive transcription factor ERF086 OS=Arabidopsis thaliana GN=ERF086 PE=2 SV=1)

HSP 1 Score: 78.5666 bits (192), Expect = 3.725e-14
Identity = 39/67 (58.21%), Postives = 47/67 (70.15%), Query Frame = 1
Query:  373 RDRDQAKVVHYRGVRTRPWGKYAAEIRDPKKNGARVWLGTYDTPEGAALAYDKAAFEMRGSKAKLNF 573
            R   QA+   + GVR RPWG+YAAEIRDP     R WLGT+DT   AALAYD+AA  MRG++A+ NF
Sbjct:   26 RRSKQAEPGRFLGVRRRPWGRYAAEIRDPTTK-ERHWLGTFDTAHEAALAYDRAALSMRGTQARTNF 91          
BLAST of BQ623351 vs. ExPASy Swiss-Prot
Match: ERF38_ARATH (Ethylene-responsive transcription factor ERF038 OS=Arabidopsis thaliana GN=ERF038 PE=2 SV=1)

HSP 1 Score: 78.5666 bits (192), Expect = 3.725e-14
Identity = 40/75 (53.33%), Postives = 52/75 (69.33%), Query Frame = 1
Query:  370 ARDRDQAKVV----HYRGVRTRPWGKYAAEIRDPKKNGARVWLGTYDTPEGAALAYDKAAFEMRGSKAKLNFPHL 582
            A+D D  KVV    ++RGVR R WGK+ +EIR+PKK  +R+WLGT+ T E AA A+D AA  ++G  A LNFP L
Sbjct:   30 AKDDDDEKVVSKHPNFRGVRMRQWGKWVSEIREPKKK-SRIWLGTFSTAEMAARAHDVAALAIKGGSAHLNFPEL 103          
BLAST of BQ623351 vs. ExPASy Swiss-Prot
Match: ERF21_ARATH (Ethylene-responsive transcription factor ERF021 OS=Arabidopsis thaliana GN=ERF021 PE=2 SV=1)

HSP 1 Score: 78.5666 bits (192), Expect = 3.725e-14
Identity = 36/60 (60.00%), Postives = 45/60 (75.00%), Query Frame = 1
Query:  403 YRGVRTRPWGKYAAEIRDPKKNGARVWLGTYDTPEGAALAYDKAAFEMRGSKAKLNFPHL 582
            YRGVR R WGK+ +EIR+P     R+WLG+++TPE AA AYD AAF  RG +A+LNFP L
Sbjct:   24 YRGVRKRKWGKWVSEIREPGTKN-RIWLGSFETPEMAATAYDVAAFHFRGREARLNFPEL 82          
BLAST of BQ623351 vs. ExPASy Swiss-Prot
Match: TINY_ARATH (Ethylene-responsive transcription factor TINY OS=Arabidopsis thaliana GN=TINY PE=2 SV=1)

HSP 1 Score: 77.7962 bits (190), Expect = 6.354e-14
Identity = 37/70 (52.86%), Postives = 50/70 (71.43%), Query Frame = 1
Query:  379 RDQAKVVHYRGVRTRPWGKYAAEIRDPKKNGARVWLGTYDTPEGAALAYDKAAFEMRGSKAKLNFPHLLG 588
            +D  K   YRGVR R WGK+ +EIR+P+K  +R+WLGT+ +PE AA A+D AA  ++G+ A LNFP L G
Sbjct:   28 KDSGKHPVYRGVRKRNWGKWVSEIREPRKK-SRIWLGTFPSPEMAARAHDVAALSIKGASAILNFPDLAG 96          
BLAST of BQ623351 vs. ExPASy Swiss-Prot
Match: CRF5_ARATH (Ethylene-responsive transcription factor CRF5 OS=Arabidopsis thaliana GN=CRF5 PE=2 SV=1)

HSP 1 Score: 77.7962 bits (190), Expect = 6.354e-14
Identity = 36/60 (60.00%), Postives = 44/60 (73.33%), Query Frame = 1
Query:  394 VVHYRGVRTRPWGKYAAEIRDPKKNGARVWLGTYDTPEGAALAYDKAAFEMRGSKAKLNF 573
            VV YRGVR RPWGK+AAEIRDP     R+WLGT+ T E AA+ YD+AA  ++G  A+ NF
Sbjct:   96 VVKYRGVRQRPWGKFAAEIRDPSSR-TRLWLGTFATAEEAAIGYDRAAIRIKGHNAQTNF 154          
BLAST of BQ623351 vs. ExPASy Swiss-Prot
Match: CRF2_ARATH (Ethylene-responsive transcription factor CRF2 OS=Arabidopsis thaliana GN=CRF2 PE=2 SV=1)

HSP 1 Score: 77.7962 bits (190), Expect = 6.354e-14
Identity = 40/77 (51.95%), Postives = 50/77 (64.94%), Query Frame = 1
Query:  403 YRGVRTRPWGKYAAEIRDPKKNGARVWLGTYDTPEGAALAYDKAAFEMRGSKAKLNFPHLLGRGNFKPGRVTPPTPL 633
            +RGVR RPWGK+AAEIRDP K   R+WLGTY+T E AA+ YD AA ++RG  A  NF         K  +  PP+P+
Sbjct:  122 FRGVRQRPWGKWAAEIRDPLKR-VRLWLGTYNTAEEAAMVYDNAAIQLRGPDALTNFSVTPTTATEK--KAPPPSPV 195          
BLAST of BQ623351 vs. ExPASy Swiss-Prot
Match: ERF62_ARATH (Ethylene-responsive transcription factor ERF062 OS=Arabidopsis thaliana GN=ERF062 PE=2 SV=1)

HSP 1 Score: 77.0258 bits (188), Expect = 1.084e-13
Identity = 38/60 (63.33%), Postives = 45/60 (75.00%), Query Frame = 1
Query:  403 YRGVRTRPWGKYAAEIRDPKKNGARVWLGTYDTPEGAALAYDKAAFEMRGSKAKLNFPHL 582
            YRGVR R WGK+ AEIR P+ N  RVWLGT++T E AA+AYD AA+ +RG  A LNFP L
Sbjct:  232 YRGVRQRHWGKWVAEIRLPR-NRTRVWLGTFETAEQAAMAYDTAAYILRGEFAHLNFPDL 290          
BLAST of BQ623351 vs. ExPASy Swiss-Prot
Match: ERF37_ARATH (Ethylene-responsive transcription factor ERF037 OS=Arabidopsis thaliana GN=ERF037 PE=2 SV=1)

HSP 1 Score: 77.0258 bits (188), Expect = 1.084e-13
Identity = 35/60 (58.33%), Postives = 46/60 (76.67%), Query Frame = 1
Query:  403 YRGVRTRPWGKYAAEIRDPKKNGARVWLGTYDTPEGAALAYDKAAFEMRGSKAKLNFPHL 582
            YRGVR R WGK+ +EIR+P+K  +R+WLGT+ TPE AA A+D AA  ++G+ A LNFP L
Sbjct:   43 YRGVRMRTWGKWVSEIREPRKK-SRIWLGTFSTPEMAARAHDAAALTIKGTSAVLNFPEL 101          
BLAST of BQ623351 vs. ExPASy Swiss-Prot
Match: ERF39_ARATH (Ethylene-responsive transcription factor ERF039 OS=Arabidopsis thaliana GN=ERF039 PE=2 SV=1)

HSP 1 Score: 76.6406 bits (187), Expect = 1.415e-13
Identity = 37/81 (45.68%), Postives = 56/81 (69.14%), Query Frame = 1
Query:  352 QTAGLAARDRDQAKVV----HYRGVRTRPWGKYAAEIRDPKKNGARVWLGTYDTPEGAALAYDKAAFEMRGSKAKLNFPHL 582
            +  G +++ +++ K V    ++RGVR R WGK+ +EIR+P+K  +R+WLGT+ TPE AA A+D AA  ++G  A LNFP L
Sbjct:   19 EKTGKSSKTKNEQKGVSKQPNFRGVRMRQWGKWVSEIREPRKK-SRIWLGTFSTPEMAARAHDVAALAIKGGSAHLNFPEL 98          
BLAST of BQ623351 vs. ExPASy Swiss-Prot
Match: RAP21_ARATH (Ethylene-responsive transcription factor RAP2-1 OS=Arabidopsis thaliana GN=RAP2-1 PE=2 SV=1)

HSP 1 Score: 76.2554 bits (186), Expect = 1.849e-13
Identity = 36/61 (59.02%), Postives = 44/61 (72.13%), Query Frame = 1
Query:  403 YRGVRTRPWGKYAAEIRDPKKNGARVWLGTYDTPEGAALAYDKAAFEMRGSKAKLNFPHLL 585
            YRG+R R WGK+ AEIR+P K  +R+WLG+Y T   AA AYD A F +RG  A+LNFP LL
Sbjct:   31 YRGIRRRKWGKWVAEIREPNKR-SRLWLGSYTTDIAAARAYDVAVFYLRGPSARLNFPDLL 90          
The following BLAST results are available for this feature:
BLAST of BQ623351 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 111
Match NameE-valueIdentityDescription
ERF86_ARATH3.725e-1458.21Ethylene-responsive transcription factor ERF086 OS... [more]
ERF38_ARATH3.725e-1453.33Ethylene-responsive transcription factor ERF038 OS... [more]
ERF21_ARATH3.725e-1460.00Ethylene-responsive transcription factor ERF021 OS... [more]
TINY_ARATH6.354e-1452.86Ethylene-responsive transcription factor TINY OS=A... [more]
CRF5_ARATH6.354e-1460.00Ethylene-responsive transcription factor CRF5 OS=A... [more]
CRF2_ARATH6.354e-1451.95Ethylene-responsive transcription factor CRF2 OS=A... [more]
ERF62_ARATH1.084e-1363.33Ethylene-responsive transcription factor ERF062 OS... [more]
ERF37_ARATH1.084e-1358.33Ethylene-responsive transcription factor ERF037 OS... [more]
ERF39_ARATH1.415e-1345.68Ethylene-responsive transcription factor ERF039 OS... [more]
RAP21_ARATH1.849e-1359.02Ethylene-responsive transcription factor RAP2-1 OS... [more]

Pages

back to top
Properties
Property NameValue
Genbank descriptionUSDA-FP_00442 Ridge pineapple sweet orange entire seedling Citrus sinensis cDNA clone USDA-FP_00442 5, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>BQ623351 ID=BQ623351; Name=BQ623351; organism=Citrus sinensis; type=EST; length=706bp
TTTTCAGAATCGGATTTTGATCTTCTTCAAAATCTTCTCGAGGACGTAAA
CACAGCCTCATCTTTTGAATCGGATTACTTAAACAATGCACCCTCCGTGT
ACTCACCAACTTCGAGCTTCGGCAGTGCCGTCTTTGATTTTCCACTACAA
GTAACAGGTAATGTTGTTATTAACAATAACAACAACTACCCAATCCCTTC
CTATGGCTGCTATGATCATCCCAAAGCCTTAAACGACGCCGTTGACAGCG
TGGGTTGGATTTCCTTTGATCATCATCAAGCTGATCAGGATGATCAAGCA
ATAAGCGAAGCCGCCGCAGCCGCCGCTACCCTTGATATGGTGACTTACCA
CCAGACGGCGGGGTTGGCAGCACGTGATCGTGATCAGGCGAAGGTGGTGC
ATTACAGGGGGGTGAGGACGAGGCCATGGGGGAAATATGCGGCTGAGATT
AGAGACCCTAAGAAGAACGGGGCACGTGTTTGGCTTGGCACTTATGATAC
CCCTGAGGGCGCAGCCTTGGCTTATGATAAAGCCGCGTTCGAGATGCGTG
GCTCTAAAGCTAAGCTTAATTTTCCTCACTTACTTGGCAGGGGTAATTTT
AAGCCCGGTCGTGTCACACCACCAACACCACTAAGCGTGGCTCACCAGAG
TCCGAGCCTGAGCTTTCTCCTACTTCTTCATCTTCTTCCTCTTCTTCGGC
TACTTC
back to top