BQ623352

Overview
NameBQ623352
Unique NameBQ623352
TypeEST
OrganismCitrus sinensis (Sweet orange)
Sequence length692
Libraries
Library NameType
Ridge pineapple sweet orange entire seedlingcdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Alignments
Feature NameTypeLocationAnalysis
Csv1_Contig764 contig Csv1_Contig764:731..1424. BLAST: Citrus Unigene V1 Contigs to Prunus persica proteins V1
Homology
BLAST of BQ623352 vs. ExPASy Swiss-Prot
Match: FAD6C_SOYBN (Omega-6 fatty acid desaturase, chloroplastic OS=Glycine max PE=2 SV=1)

HSP 1 Score: 75.8702 bits (185), Expect = 2.315e-13
Identity = 56/202 (27.72%), Postives = 88/202 (43.56%), Query Frame = 2
Query:    8 LNSVVGHLLHSSILVPYHGWRISHRTHHQNHGHVENDESWHPLSEKIYRTLDSATRFLRFKIPFPLLAY-PFYLWSRSPGKSGSHFDPNSDLFVPSERKDVITSTVCWTAMAALLVGLSFVM---GPMQLLKLYGLPYWIFVMWLDLVTYLHHHGHEDKLPWYRGKEWSYLRGGLT-TLDRDY-GWVNNIHHDIGTHVIHHL 595
            +  +VG L    ++ PY  WR  H  HH     +  D +WHP    +++    +T  LR  I   +  Y PF  W         HFD     F PSE   V  S  C    A + +G   ++   G M  +K + +P+  +  W+   T +HH      +P+   +EW+  +  L  T+  DY  W+  + HDI  H+ HH+
Sbjct:  178 VEDIVGTLAFMPLIYPYEPWRFKHDRHHAKTNMLREDTAWHP----VWKDEFESTPLLRKAI---IYGYGPFRCWMSIAHWLMWHFDLKK--FRPSEVPRVKISLAC--VFAFIAIGWPLIIYKTGIMGWIKFWLMPWLGYHFWMSTFTMVHHTA--PYIPFKYSEEWNRAQAQLNGTVHCDYPKWIEILCHDINVHIPHHI 366          
BLAST of BQ623352 vs. ExPASy Swiss-Prot
Match: FAD6C_BRANA (Omega-6 fatty acid desaturase, chloroplastic OS=Brassica napus PE=2 SV=1)

HSP 1 Score: 67.3958 bits (163), Expect = 8.235e-11
Identity = 53/201 (26.37%), Postives = 86/201 (42.79%), Query Frame = 2
Query:    8 LNSVVGHLLHSSILVPYHGWRISHRTHHQNHGHVENDESWHPLSEKIYRTLDSATRFLRFKIPFPLLAYPFYLWSRSPGKSGSHFDPNSDLFVPSERKDVITSTVCWTAMAALLVG---LSFVMGPMQLLKLYGLPYWIFVMWLDLVTYLHHHGHEDKLPWYRGKEWSYLRGGLT-TLDRDY-GWVNNIHHDIGTHVIHHL 595
            +  +VG L    ++ PY  WR  H  HH     + +D +W P+  + +     ++  LR  I F     P   W         HF  N   F PSE   V  S  C    A + VG   + + +G +  +K + +P+  +  W+   T +HH      +P+    EW+  +  L  T+  DY  W+  + HDI  H+ HH+
Sbjct:  179 VEDIVGTLAFLPLVYPYEPWRFKHDRHHAKTNMLVHDTAWQPVPPEEF----DSSPVLRKAIIFGY--GPIRPWLSIAHWVNWHF--NLRKFRPSEVNRVKISLAC--VFAFMAVGWPLIIYKVGVLGWVKFWLMPWLGYHFWMSTFTMVHHTA--PHIPFKPADEWNAAQAQLNGTVHCDYPSWIEILCHDINVHIPHHI 367          
The following BLAST results are available for this feature:
BLAST of BQ623352 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 22
Match NameE-valueIdentityDescription
FAD6C_SOYBN2.315e-1327.72Omega-6 fatty acid desaturase, chloroplastic OS=Gl... [more]
FAD6C_BRANA8.235e-1126.37Omega-6 fatty acid desaturase, chloroplastic OS=Br... [more]

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Properties
Property NameValue
Genbank descriptionUSDA-FP_00443 Ridge pineapple sweet orange entire seedling Citrus sinensis cDNA clone USDA-FP_00443 5, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>BQ623352 ID=BQ623352; Name=BQ623352; organism=Citrus sinensis; type=EST; length=692bp
TCACAAGTTGAATAGTGTGGTGGGGCATCTGCTGCATTCTTCAATTCTGG
TTCCTTATCATGGATGGAGAATTAGCCACAGGACTCATCATCAAAACCAT
GGGCATGTTGAGAATGATGAATCCTGGCACCCGTTGTCTGAGAAAATTTA
CAGGACTTTGGATAGTGCAACAAGATTTTTGAGATTCAAAATTCCTTTTC
CCTTGCTTGCATATCCCTTTTATCTTTGGAGTAGGAGTCCGGGGAAGTCT
GGTTCTCACTTTGACCCTAACAGTGACCTGTTTGTCCCAAGTGAGAGGAA
GGATGTGATCACTTCAACAGTATGCTGGACGGCCATGGCTGCTTTGCTAG
TGGGTTTATCATTTGTAATGGGTCCTATGCAGTTGCTTAAACTCTATGGC
CTTCCATATTGGATTTTTGTCATGTGGCTGGACCTTGTGACTTACTTGCA
TCACCATGGGCATGAAGACAAACTTCCGTGGTATCGTGGAAAGGAATGGA
GTTACTTAAGGGGAGGGCTCACAACACTTGATCGTGACTATGGATGGGTC
AATAACATCCACCACGATATTGGAACCCACGTCATACATCACCTCTTCCT
CAGATCCCGCATTACCACTTAATAGAAGCAACTGAGGCTGCTAAACCAGT
TCTTGGAAATATTACCGTGAGCCAAAGAAATCGGGGACCGAT
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