BQ623363

Overview
NameBQ623363
Unique NameBQ623363
TypeEST
OrganismCitrus sinensis (Sweet orange)
Sequence length678
Libraries
Library NameType
Ridge pineapple sweet orange entire seedlingcdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Alignments
Feature NameTypeLocationAnalysis
Csv1_Contig7118 contig Csv1_Contig7118:24..701. BLAST: Citrus Unigene V1 Contigs to Prunus persica proteins V1
Homology
BLAST of BQ623363 vs. ExPASy Swiss-Prot
Match: GL91_ORYSJ (Germin-like protein 9-1 OS=Oryza sativa subsp. japonica GN=Os09g0568500 PE=2 SV=1)

HSP 1 Score: 106.686 bits (265), Expect = 1.173e-22
Identity = 62/164 (37.80%), Postives = 92/164 (56.10%), Query Frame = 3
Query:  150 PAMVTADDFVFSGLGVAGNTTSIINAAVTPAFVAQFPAVNGLGLSLARLDLAKGGVIPIHTHPAASEILLVVHGCITAGFISSSAN-TVYVKTLKKGDIMIFPQGLLHFQVNSGAD-GALGFVSFNSPNPGLQITDFALFANNLSSQLVEQTTFLDDATGKRLK 635
            P+ +    F +  L V GN+       VT A  A+FPA+ G  +S A L    G V P H HP ASE+L+VV G +  G + ++ N TVY +TL+ GD+ +FP+G++HFQ N+G D  A  F +F S  PG      ALF + +   +++++   D AT  +LK
Sbjct:   42 PSGIDGAFFTYKNL-VTGNSGDPAKLTVTKATHAEFPALLGQSVSYAALVFGAGTVNPPHIHPRASELLVVVQGPLLVGLVDAARNGTVYTQTLQTGDMFVFPKGMVHFQFNNGTDVVARAFSAFGSATPGTISLPAALFGSGIDDTILDKSMHTDQATVDQLK 204          
BLAST of BQ623363 vs. ExPASy Swiss-Prot
Match: GL124_ORYSJ (Putative germin-like protein 12-4 OS=Oryza sativa subsp. japonica GN=Os12g0155000 PE=3 SV=2)

HSP 1 Score: 106.301 bits (264), Expect = 1.531e-22
Identity = 66/170 (38.82%), Postives = 93/170 (54.71%), Query Frame = 3
Query:   84 VNDFCVADLKLSDSPAGYPCVPPAMVTADDFVFSG-LGVAGNTT-SIINAAVTPAFVAQFPAVNGLGLSLARLDLAKGGVIPIHTHPAASEILLVVHGCITAGFISSS----ANTVYVKTLKKGDIMIFPQGLLHFQVNSGAD-GALGFVSFNSPNPGLQITDFALFANN 572
            + DFCVAD        G PC     V+ DDF  +  L    +TT S   + VT   V +   +N L +S+AR+D A  G  P HTHP A+EIL V+ G +  GF++S+     N ++ KTL KGD+ +FPQGL+HFQ N   D  A+   + +S NPG      A+F ++
Sbjct:   28 LQDFCVADKHSPVRVNGLPCKDAKDVSVDDFFLAANLDKPMDTTKSKAGSNVTLINVMKLAGLNTLSISMARIDYAPKGQNPPHTHPRATEILTVLEGSLYVGFVTSNQANRENKLFTKTLNKGDVFVFPQGLIHFQFNPSYDKPAVAIAALSSQNPGAITIANAVFGSH 197          
BLAST of BQ623363 vs. ExPASy Swiss-Prot
Match: GL31_ORYSJ (Germin-like protein 3-1 OS=Oryza sativa subsp. japonica GN=Os03g0179000 PE=2 SV=1)

HSP 1 Score: 105.916 bits (263), Expect = 2.000e-22
Identity = 66/198 (33.33%), Postives = 103/198 (52.02%), Query Frame = 3
Query:   90 DFCVADLKLSDSPA-----GYPCVPPAMVTADDFVFSGLGVAGNTTSII---NAAVTPAFVAQFPAVNGLGLSLARLDLAKGGVIPIHTHPAASEILLVVHGCITAGFISSSANTVYVKTLKKGDIMIFPQGLLHFQVN-SGADGALGFVSFNSPNPGLQITDFALFAN--NLSSQLVEQTTFLDDATGKRLKAILGG 650
            D+CVAD   + +       G  C+ PA+  AD F  S L  A N  + +   NA +T    A  P  N  GL++AR+DLA GG+ P H+HP ASE  LV+ G +  GF  +S   +Y + L+ G+  +FP+ ++HF  N   A  A+     NS +PG Q+  F+ F     L  +++++   +     +R++  LGG
Sbjct:   29 DYCVADTAAATAAGAFHLNGLACIDPALARADHFATSALSRATNPAATLYGFNATLTSP-AASLPGANAQGLAMARIDLAPGGMAPPHSHPRASEAALVLSGSVLVGFADTSYR-LYTQLLRAGEAFVFPRAMVHFLYNMDTAAPAVVLSGLNSQSPGAQLVPFSAFRTEPRLPDEVLKKAFKITGQDVQRIQKHLGG 224          
BLAST of BQ623363 vs. ExPASy Swiss-Prot
Match: GL111_ORYSJ (Germin-like protein 11-1 OS=Oryza sativa subsp. japonica GN=Os11g0537300 PE=2 SV=1)

HSP 1 Score: 105.531 bits (262), Expect = 2.612e-22
Identity = 55/145 (37.93%), Postives = 84/145 (57.93%), Query Frame = 3
Query:  132 GYPCVPPAMVTADDFVFSGLGVAGNTTSIINAAVTPAFVAQFPAVNGLGLSLARLDLAKGGVIPIHTHPAASEILLVVHGCITAGFISSSANTVYVKTLKKGDIMIFPQGLLHFQVNSGADGALGFVSFNSPNPGLQITDFALFA 566
            G+ C  P+ + A DF    L  AG+  +++ ++       +FP +N LG+S+AR D+A  G +  H+HP ASE++ V  G + AGF  +    ++ KTL +GD+ IFP+GL+HF +N G   A  F   NS NPG+     A+FA
Sbjct:   46 GFFCKSPSTIMASDFKTLLLNHAGDLDNMVRSSANIITATEFPGLNTLGISMARTDIAVSGAVLPHSHPRASEMMFVHSGSVVAGFFDTKGK-LFQKTLAEGDVFIFPRGLVHFIMNYGFGLATTFSVLNSQNPGVVGITHAMFA 189          
BLAST of BQ623363 vs. ExPASy Swiss-Prot
Match: GLT3_ARATH (Germin-like protein subfamily T member 3 OS=Arabidopsis thaliana GN=At1g74820 PE=2 SV=1)

HSP 1 Score: 105.145 bits (261), Expect = 3.412e-22
Identity = 51/133 (38.35%), Postives = 83/133 (62.41%), Query Frame = 3
Query:   90 DFCVADLKLSDSPAGYPCVPPAMVTADDFVFSGLGVAGNTTSIINAAVTPAFVAQFPAVNGLGLSLARLDLAKGGVIPIHTHPAASEILLVVHGCITAGFISSSANTVYVKTLKKGDIMIFPQGLLHFQVNSG 488
            DFCVADL+ + + +GYPC   + VT++DF +SGL    NT++    A  PA +  FP +N LG+S+  + +A GG    H+HP  +E  +V+ G +  GF++++  T+Y K +  GD+ + P GL+H++ N G
Sbjct:   42 DFCVADLQATPTNSGYPC--KSQVTSEDFFYSGLNTPLNTSNPKGIAANPANLLTFPGLNTLGISMYNVAIAPGGYNQPHSHPGVTEAGVVIEGSVLVGFLTTN-YTLYSKVIGPGDMFVIPPGLIHYEGNVG 171          
BLAST of BQ623363 vs. ExPASy Swiss-Prot
Match: GL93_ORYSJ (Germin-like protein 9-3 OS=Oryza sativa subsp. japonica GN=Os09g0568700 PE=2 SV=1)

HSP 1 Score: 99.3673 bits (246), Expect = 1.872e-20
Identity = 58/168 (34.52%), Postives = 92/168 (54.76%), Query Frame = 3
Query:  159 VTADDFVFSGLGVAGNTTSI--------INAAVTPAFVAQFPAVNGLGLSLARLDLAKGGVIPIHTHPAASEILLVVHGCITAGFISSSANTVYVKTLKKGDIMIFPQGLLHFQVNSGADGALGFVSFNSPNPGLQITDFALFANNLSSQLVEQTTFLDDATGKRLKA 638
            +T D F F+G     N  S+         N  VT A +A+FPA+NG  +S A L      + P HTHP ++E+LL+V G ++ GF+ ++ N +Y + L  GD+ +FP+G++HFQ NSG   A+   +F S   GL      +F  N+   ++ ++   D  T ++LKA
Sbjct:   43 ITGDFFTFTGFR---NPLSMNMSMPMPNANFTVTKATMAEFPALNGQSVSYAVLMYPPATLNPPHTHPRSAELLLLVDGALSVGFVDTT-NKLYTQDLAAGDMFVFPKGMVHFQFNSGNQPAMALSAFGSAAAGLVSVPVTVFGTNIDDAVLAKSFKTDVPTIQKLKA 206          
BLAST of BQ623363 vs. ExPASy Swiss-Prot
Match: GL11_ARATH (Germin-like protein subfamily 1 member 1 OS=Arabidopsis thaliana GN=GLP7 PE=2 SV=2)

HSP 1 Score: 98.5969 bits (244), Expect = 3.193e-20
Identity = 59/167 (35.33%), Postives = 84/167 (50.30%), Query Frame = 3
Query:   84 VNDFCVADLKLSDSPA---GYPCVPPAMVTADDFVFSGLGVAGNTTS---IINAAVTPAFVAQFPAVNGLGLSLARLDLAKGGVIPIHTHPAASEILLVVHGCITAGFISSSANTVYVKTLKKGDIMIFPQGLLHFQVN-SGADGALGFVSFNSPNPGLQITDFALF 563
            + D+CV+    S       G  C  P   +  DF  S L   GNT +   +IN  VT    A  P +N +GL++ARLD    GV+P H HP ASE+ + + G +  GF+ +S   V+ + L  G+  +FP+GL+HF  N      AL     +S NPG QI   + F
Sbjct:   23 LQDYCVSPPPSSHQQIFLNGKLCKDPTQASVSDFSTSALSRPGNTKTKPFMINVTVTTT--ANLPGLNTVGLTMARLDFGGSGVVPPHVHPRASEVTVCLDGVLLVGFVDTSGR-VFTQELHPGETFVFPKGLIHFLYNIDTVSSALAVSGLSSQNPGTQIVSLSSF 186          
BLAST of BQ623363 vs. ExPASy Swiss-Prot
Match: SR1A_PHYPO (Spherulin-1A OS=Physarum polycephalum PE=1 SV=1)

HSP 1 Score: 68.9366 bits (167), Expect = 2.709e-11
Identity = 42/131 (32.06%), Postives = 62/131 (47.33%), Query Frame = 3
Query:  171 DFVFSGLGVAGNTTSIINAAVTPAFVAQFPAVNGLGLSLARLDLAKGGVIPIHTHPAASEILLVVHGCITAGFISSSANTVYVKTLKKGDIMIFPQGLLHFQVNSGADGALGFVSFNSPNPGLQITDFALF 563
            DF  S LGV   T               FPAV G  +++    +   G+   HTHP A+EI  +  G   AGF   +       TL+ G   +FPQG +HF++N   + A+   +FN+ +PG+Q T  + F
Sbjct:   75 DFKNSKLGVTQGT----GGKTVATSRTNFPAVIGHNVAMTVGFIEACGINLPHTHPRATEINFIASGKFEAGFFLENQAKFIGHTLEAGMATVFPQGAIHFEINMNCEPAMFVAAFNNEDPGVQTTASSFF 201          
BLAST of BQ623363 vs. ExPASy Swiss-Prot
Match: SR1B_PHYPO (Spherulin-1B OS=Physarum polycephalum PE=2 SV=1)

HSP 1 Score: 68.5514 bits (166), Expect = 3.539e-11
Identity = 42/131 (32.06%), Postives = 63/131 (48.09%), Query Frame = 3
Query:  171 DFVFSGLGVAGNTTSIINAAVTPAFVAQFPAVNGLGLSLARLDLAKGGVIPIHTHPAASEILLVVHGCITAGFISSSANTVYVKTLKKGDIMIFPQGLLHFQVNSGADGALGFVSFNSPNPGLQITDFALF 563
            DF  S LGV    T              FPAV G  +++    +   G+   HTHP A+EI  +  G   AGF   +  T     L++G   +FPQG +HF++N   + A+   +FN+ +PG+Q T  + F
Sbjct:   62 DFKNSKLGV----TQSAGGKTVATSRTDFPAVIGHNIAMTVGFIEACGINLPHTHPRATEINFIAKGRFQAGFFLENQATFIGHILEEGMATVFPQGAIHFEINLECEPAMFVAAFNNEDPGVQTTASSFF 188          
The following BLAST results are available for this feature:
BLAST of BQ623363 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 89
Match NameE-valueIdentityDescription
GL91_ORYSJ1.173e-2237.80Germin-like protein 9-1 OS=Oryza sativa subsp. jap... [more]
GL124_ORYSJ1.531e-2238.82Putative germin-like protein 12-4 OS=Oryza sativa ... [more]
GL31_ORYSJ2.000e-2233.33Germin-like protein 3-1 OS=Oryza sativa subsp. jap... [more]
GL111_ORYSJ2.612e-2237.93Germin-like protein 11-1 OS=Oryza sativa subsp. ja... [more]
GLT3_ARATH3.412e-2238.35Germin-like protein subfamily T member 3 OS=Arabid... [more]
GL93_ORYSJ1.872e-2034.52Germin-like protein 9-3 OS=Oryza sativa subsp. jap... [more]
GL11_ARATH3.193e-2035.33Germin-like protein subfamily 1 member 1 OS=Arabid... [more]
SR1A_PHYPO2.709e-1132.06Spherulin-1A OS=Physarum polycephalum PE=1 SV=1[more]
SR1B_PHYPO3.539e-1132.06Spherulin-1B OS=Physarum polycephalum PE=2 SV=1[more]

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Properties
Property NameValue
Genbank descriptionUSDA-FP_00454 Ridge pineapple sweet orange entire seedling Citrus sinensis cDNA clone USDA-FP_00454 5, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>BQ623363 ID=BQ623363; Name=BQ623363; organism=Citrus sinensis; type=EST; length=678bp
AATAACTACACTAAATATTAGTCAAAATGCTTCACATTCTCTTCTTCTTC
CTTGCTTTCGTATCCTCTTCCTCCAATGCTATGGTTAACGACTTCTGCGT
CGCTGACCTAAAGCTGTCGGATAGTCCCGCCGGCTATCCTTGCGTGCCCC
CCGCTATGGTTACCGCTGACGACTTCGTATTTTCGGGCCTCGGCGTGGCC
GGAAACACCACGAGCATTATCAACGCGGCAGTGACACCTGCATTTGTAGC
TCAATTTCCGGCCGTGAATGGGCTCGGACTCTCCTTGGCACGCCTAGATC
TTGCAAAGGGTGGCGTAATCCCAATCCACACTCATCCAGCTGCTTCCGAA
ATCCTTCTTGTTGTGCATGGCTGCATAACTGCCGGGTTCATTTCCTCTTC
AGCTAACACTGTTTACGTAAAGACGCTTAAGAAGGGAGATATCATGATCT
TTCCACAAGGGTTGTTGCATTTTCAAGTAAATTCCGGTGCGGACGGAGCC
CTCGGTTTTGTTAGCTTCAACAGCCCGAATCCTGGACTCCAAATCACCGA
TTTCGCCTTATTTGCTAACAACTTGTCTTCCCAATTGGTGGAGCAGACCA
CTTTCCTTGACGATGCTACGGGGAAGAGGCTCAAGGCTATCCTTGGTGGC
ACCGGCTAGGCTTATTAGTTACCACATT
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