BQ623365

Overview
NameBQ623365
Unique NameBQ623365
TypeEST
OrganismCitrus sinensis (Sweet orange)
Sequence length483
Libraries
Library NameType
Ridge pineapple sweet orange entire seedlingcdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Homology
BLAST of BQ623365 vs. ExPASy Swiss-Prot
Match: GL13_ORYSJ (Germin-like protein 1-3 OS=Oryza sativa subsp. japonica GN=GER8 PE=2 SV=1)

HSP 1 Score: 105.916 bits (263), Expect = 9.480e-23
Identity = 49/100 (49.00%), Postives = 64/100 (64.00%), Query Frame = 2
Query:    8 GINPPHTHPRGTEAGIVTRGTLLVGIVTTNNTFFSKVLTPGKVFLIPRALVHFQLNVGNEPATFIPIFNTQNPGVSDSIGTIFDATPPVPNEVLTKSFRV 307
            G+NPPHTHPR TE   V  G+L VG VTT N  F++ +  G+VF+ PR LVHFQ N GN PA  I   N+Q PG       +F A PP+P++ L ++F+V
Sbjct:  107 GLNPPHTHPRATEIIFVVEGSLDVGFVTTANKLFTRTVCKGEVFVFPRGLVHFQKNNGNTPAFAIAALNSQLPGTQSIAAALFGAAPPLPSDTLARAFQV 206          
BLAST of BQ623365 vs. ExPASy Swiss-Prot
Match: GL110_ARATH (Germin-like protein subfamily 1 member 10 OS=Arabidopsis thaliana GN=At5g38930 PE=2 SV=1)

HSP 1 Score: 105.145 bits (261), Expect = 1.617e-22
Identity = 52/104 (50.00%), Postives = 65/104 (62.50%), Query Frame = 2
Query:    2 VGGINPPHTHPRGTEAGIVTRGTLLVGIVTTN--NTFFSKVLTPGKVFLIPRALVHFQLNVGNEPATFIPIFNTQNPGVSDSIGTIFDATPPVPNEVLTKSFRV 307
            V G NPPHTHPR TE  +V  GTLLVG VT+N  N  F+KVL  G VF+ P  L+HFQ N+G  PA      ++QNPGV     T+F A P +   +L K+F+V
Sbjct:  106 VDGQNPPHTHPRATEILVVELGTLLVGFVTSNPDNRLFTKVLNEGDVFVFPEGLIHFQANIGKAPAVAFAALSSQNPGVITIAPTVFGANPAINPNILAKAFQV 209          
BLAST of BQ623365 vs. ExPASy Swiss-Prot
Match: GL12_ORYSJ (Germin-like protein 1-2 OS=Oryza sativa subsp. japonica GN=Os01g0705100 PE=2 SV=1)

HSP 1 Score: 104.375 bits (259), Expect = 2.758e-22
Identity = 47/104 (45.19%), Postives = 70/104 (67.31%), Query Frame = 2
Query:    5 GGINPPHTHPRGTEAGIVTRGTLLVGIVTTNNTFFSKVLTPGKVFLIPRALVHFQLNVGNEPATFIPIFNTQNPGVSDSIGTIFDATPPVPNEVLTKSFRVGDD 316
            GG+NPPH+HPR +E  +V  G ++VG  T  N  FSKV+   ++F++PR L HFQLNVG   A+F+ +F++Q+PG+      +F   P +P EVL K+F +G+D
Sbjct:  109 GGLNPPHSHPRASELVLVLSGEVMVGFTTAANRLFSKVVREKELFVVPRGLQHFQLNVGAGNASFVAMFDSQSPGLVTPTFALFATQPAMPMEVLAKTFLMGED 212          
BLAST of BQ623365 vs. ExPASy Swiss-Prot
Match: GL89_ORYSJ (Germin-like protein 8-9 OS=Oryza sativa subsp. japonica GN=Os08g0189850 PE=2 SV=1)

HSP 1 Score: 103.99 bits (258), Expect = 3.603e-22
Identity = 54/104 (51.92%), Postives = 67/104 (64.42%), Query Frame = 2
Query:    8 GINPPHTHPRGTEAGIVTRGTLLVGIVTT--NNTFFSKVLTPGKVFLIPRALVHFQLNVG-NEPATFIPIFNTQNPGVSDSIGTIFDATPPVPNEVLTKSFRVG 310
            G NPPHTHPR TE   V  GTL VG VT+  NNT FSKVL  G VF+ P  L+HFQ N   ++PA  I   ++QNPGV      +F + PP+ +EVL K+F+VG
Sbjct:  104 GQNPPHTHPRATEILTVLEGTLHVGFVTSNPNNTLFSKVLNKGDVFVFPVGLIHFQFNPNPHQPAVAIAALSSQNPGVITIANAVFGSKPPISDEVLAKAFQVG 207          
BLAST of BQ623365 vs. ExPASy Swiss-Prot
Match: GL83_ORYSJ (Germin-like protein 8-3 OS=Oryza sativa subsp. japonica GN=GER2 PE=2 SV=1)

HSP 1 Score: 103.605 bits (257), Expect = 4.705e-22
Identity = 51/102 (50.00%), Postives = 69/102 (67.65%), Query Frame = 2
Query:    8 GINPPHTHPRGTEAGIVTRGTLLVGIVTTN-NTFFSKVLTPGKVFLIPRALVHFQLNVG-NEPATFIPIFNTQNPGVSDSIGTIFDATPPVPNEVLTKSFRV 307
            G+NPPH HPR TE   V  GTL VG VT+N N  FSKV+  G VF+ P+A++HFQ+N+  N+PA      ++QNPGV      IF +TPP+ ++VL K+F+V
Sbjct:  106 GVNPPHVHPRATELLTVLEGTLYVGFVTSNPNRLFSKVVHKGDVFVFPKAMIHFQMNLDHNKPAVAQSALSSQNPGVITIASAIFGSTPPISDDVLVKAFQV 207          
BLAST of BQ623365 vs. ExPASy Swiss-Prot
Match: GL38_ORYSJ (Germin-like protein 3-8 OS=Oryza sativa subsp. japonica GN=Os03g0804700 PE=2 SV=1)

HSP 1 Score: 103.219 bits (256), Expect = 6.145e-22
Identity = 49/101 (48.51%), Postives = 66/101 (65.35%), Query Frame = 2
Query:    5 GGINPPHTHPRGTEAGIVTRGTLLVGIVTTNNTFFSKVLTPGKVFLIPRALVHFQLNVGNEPATFIPIFNTQNPGVSDSIGTIFDATPPVPNEVLTKSFRV 307
            GG+NP H+HPR TE   V  G +L G V+T   F+SKVL  G+ F++PR ++HFQ NVG   A  I  FN+Q PGV  +  T+F + P +P+ VL KSF+V
Sbjct:  113 GGVNPLHSHPRATELIHVVAGRVLAGFVSTAGEFYSKVLGEGETFVVPRGMIHFQYNVGGVAAQVITAFNSQMPGVVAAGSTLFGSDPEIPDAVLAKSFQV 213          
BLAST of BQ623365 vs. ExPASy Swiss-Prot
Match: GL85_ORYSJ (Germin-like protein 8-5 OS=Oryza sativa subsp. japonica GN=Os08g0189400 PE=2 SV=1)

HSP 1 Score: 102.449 bits (254), Expect = 1.048e-21
Identity = 52/103 (50.49%), Postives = 66/103 (64.08%), Query Frame = 2
Query:    8 GINPPHTHPRGTEAGIVTRGTLLVGIVTT--NNTFFSKVLTPGKVFLIPRALVHFQLNVG-NEPATFIPIFNTQNPGVSDSIGTIFDATPPVPNEVLTKSFRV 307
            G NPPHTHPR TE   V  GTL VG VT+  NNT FSKVL  G VF+ P+ L+HFQ N   ++PA  I   ++QNPG       +F + PP+ +EVL K+F+V
Sbjct:  104 GQNPPHTHPRATEILTVLEGTLYVGFVTSNPNNTLFSKVLNKGDVFVFPQGLIHFQFNPNPHQPAVAIAALSSQNPGAITIANAVFGSKPPISDEVLAKAFQV 206          
BLAST of BQ623365 vs. ExPASy Swiss-Prot
Match: GL84_ORYSJ (Germin-like protein 8-4 OS=Oryza sativa subsp. japonica GN=GER1 PE=2 SV=1)

HSP 1 Score: 102.449 bits (254), Expect = 1.048e-21
Identity = 50/102 (49.02%), Postives = 68/102 (66.67%), Query Frame = 2
Query:    8 GINPPHTHPRGTEAGIVTRGTLLVGIVTTN-NTFFSKVLTPGKVFLIPRALVHFQLNVG-NEPATFIPIFNTQNPGVSDSIGTIFDATPPVPNEVLTKSFRV 307
            G+NPPH HPR TE   V  GTL VG VT+N N  FSKV+  G  F+ P+A++HFQ+N+  N+PA      N+QNPGV      +F + PP+ ++VLTK+F+V
Sbjct:  106 GVNPPHIHPRATELLTVLEGTLYVGFVTSNPNRLFSKVVHKGDTFVFPKAMIHFQMNLDHNKPAVAQSSLNSQNPGVITIASAVFGSKPPISDDVLTKAFQV 207          
BLAST of BQ623365 vs. ExPASy Swiss-Prot
Match: GL812_ORYSJ (Germin-like protein 8-12 OS=Oryza sativa subsp. japonica GN=Os08g0231400 PE=2 SV=1)

HSP 1 Score: 101.293 bits (251), Expect = 2.335e-21
Identity = 49/102 (48.04%), Postives = 69/102 (67.65%), Query Frame = 2
Query:    8 GINPPHTHPRGTEAGIVTRGTLLVGIVTTN-NTFFSKVLTPGKVFLIPRALVHFQLNVGNE-PATFIPIFNTQNPGVSDSIGTIFDATPPVPNEVLTKSFRV 307
            G+NPPH HPR TE   V  GTL VG VT+N N  FSKV+  G VF+ P+A++HFQ+N+ ++ PA      ++QNPGV      +F + PP+ ++VLTK+F+V
Sbjct:  106 GVNPPHIHPRATELLTVLEGTLYVGFVTSNPNKLFSKVVCKGDVFVFPKAMIHFQMNLDHDKPAVAQSALSSQNPGVITIASAVFGSQPPISDDVLTKAFQV 207          
BLAST of BQ623365 vs. ExPASy Swiss-Prot
Match: GL37_ORYSJ (Germin-like protein 3-7 OS=Oryza sativa subsp. japonica GN=GER7 PE=2 SV=1)

HSP 1 Score: 101.293 bits (251), Expect = 2.335e-21
Identity = 48/105 (45.71%), Postives = 67/105 (63.81%), Query Frame = 2
Query:    5 GGINPPHTHPRGTEAGIVTRGTLLVGIVTTNNTFFSKVLTPGKVFLIPRALVHFQLNVGNEPATFIPIFNTQNPGVSDSIGTIFDATPPVPNEVLTKSFRVGDDV 319
            GG+NP H+HPR  E   V  G +LVG V+T   ++SKV+  G+ F IPR L+HFQ N GN  A  + +FN+Q PGV  +   +F A P +P+ VL KSF+V  ++
Sbjct:  119 GGVNPLHSHPRAAELVHVITGRMLVGFVSTAGKYYSKVVGEGETFAIPRGLMHFQYNPGNASARAMTVFNSQLPGVVPAATALFGADPEIPDAVLAKSFQVDAEI 223          
The following BLAST results are available for this feature:
BLAST of BQ623365 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 86
Match NameE-valueIdentityDescription
GL13_ORYSJ9.480e-2349.00Germin-like protein 1-3 OS=Oryza sativa subsp. jap... [more]
GL110_ARATH1.617e-2250.00Germin-like protein subfamily 1 member 10 OS=Arabi... [more]
GL12_ORYSJ2.758e-2245.19Germin-like protein 1-2 OS=Oryza sativa subsp. jap... [more]
GL89_ORYSJ3.603e-2251.92Germin-like protein 8-9 OS=Oryza sativa subsp. jap... [more]
GL83_ORYSJ4.705e-2250.00Germin-like protein 8-3 OS=Oryza sativa subsp. jap... [more]
GL38_ORYSJ6.145e-2248.51Germin-like protein 3-8 OS=Oryza sativa subsp. jap... [more]
GL85_ORYSJ1.048e-2150.49Germin-like protein 8-5 OS=Oryza sativa subsp. jap... [more]
GL84_ORYSJ1.048e-2149.02Germin-like protein 8-4 OS=Oryza sativa subsp. jap... [more]
GL812_ORYSJ2.335e-2148.04Germin-like protein 8-12 OS=Oryza sativa subsp. ja... [more]
GL37_ORYSJ2.335e-2145.71Germin-like protein 3-7 OS=Oryza sativa subsp. jap... [more]

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Properties
Property NameValue
Genbank descriptionUSDA-FP_00456 Ridge pineapple sweet orange entire seedling Citrus sinensis cDNA clone USDA-FP_00456 5, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>BQ623365 ID=BQ623365; Name=BQ623365; organism=Citrus sinensis; type=EST; length=483bp
TGTCGGCGGAATAAACCCGCCTCATACGCATCCTCGTGGAACTGAGGCTG
GTATTGTTACCAGAGGAACGTTGCTCGTAGGTATAGTAACAACTAATAAT
ACCTTTTTCTCAAAGGTCTTGACTCCCGGGAAGGTGTTCTTAATTCCTAG
AGCACTGGTTCACTTCCAACTAAATGTTGGAAACGAGCCGGCCACCTTTA
TACCTATTTTCAATACTCAAAATCCTGGCGTTTCGGATTCAATCGGTACT
ATATTTGACGCAACGCCTCCCGTTCCCAATGAAGTGTTGACCAAATCTTT
CCGAGTGGGTGATGATGTGATCAATGCCATCAGAGCAGCCCGAGCCCAAT
CAAGCTAGATTAACATCCTCGATGTTCGATCGATATCCTTTATGTCTCAC
AACTAATGGATGAGATCTGTTGTGTGTACTAATTATTAAATAAAGAATAA
AGCTGAGACAACCAATAATTATAGAATAAAGAA
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