BQ623370

Overview
NameBQ623370
Unique NameBQ623370
TypeEST
OrganismCitrus sinensis (Sweet orange)
Sequence length493
Libraries
Library NameType
Ridge pineapple sweet orange entire seedlingcdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Alignments
Feature NameTypeLocationAnalysis
Csv1_Contig242 contig Csv1_Contig242:424..916. BLAST: Citrus Unigene V1 Contigs to Prunus persica proteins V1
Homology
BLAST of BQ623370 vs. ExPASy Swiss-Prot
Match: RL102_ORYSI (60S ribosomal protein L10-2 OS=Oryza sativa subsp. indica GN=SG12 PE=2 SV=2)

HSP 1 Score: 154.451 bits (389), Expect = 2.503e-37
Identity = 75/94 (79.79%), Postives = 82/94 (87.23%), Query Frame = 2
Query:    2 TCARVAIGQVLLSVRCKDSNSHHAQEALRRAKFKFPGRQKIIVSRKWGFTKFSRADYLRWKSENRIVPDGVNAKLLGCHGPLAQRQPGRAFLEA 283
            TCARV IGQVLLSVRCK +N+ HA EALRRAKFKFPGRQKII SRKWGFTKFSR +Y+R KSE RI+PDGVNAKLLGCHG L+ R PG+AFL A
Sbjct:  125 TCARVDIGQVLLSVRCKPNNAVHASEALRRAKFKFPGRQKIIESRKWGFTKFSRDEYVRLKSEGRIMPDGVNAKLLGCHGRLSARAPGKAFLSA 218          
BLAST of BQ623370 vs. ExPASy Swiss-Prot
Match: RL101_ORYSJ (60S ribosomal protein L10-1 OS=Oryza sativa subsp. japonica GN=SC34 PE=2 SV=1)

HSP 1 Score: 147.902 bits (372), Expect = 2.343e-35
Identity = 71/95 (74.74%), Postives = 83/95 (87.37%), Query Frame = 2
Query:    2 TCARVAIGQVLLSVRCKDSNSHHAQEALRRAKFKFPGRQKIIVSRKWGFTKFSRADYLRWKSENRIVPDGVNAKLLGCHGPLAQRQPGRAFLEAT 286
            TCARV IGQVLLSVRCK+SN+ HA+EALRRAKFKFPGRQKII SRKWGFTKF+R +Y++ K+E RI+ DGVNA+LLG HG LA+R PG+AFL  T
Sbjct:  125 TCARVDIGQVLLSVRCKESNAKHAEEALRRAKFKFPGRQKIIHSRKWGFTKFTREEYVKLKAEGRIMSDGVNAQLLGSHGRLAKRAPGKAFLAET 219          
BLAST of BQ623370 vs. ExPASy Swiss-Prot
Match: RL101_ORYSI (60S ribosomal protein L10-1 OS=Oryza sativa subsp. indica GN=SC34 PE=2 SV=2)

HSP 1 Score: 147.902 bits (372), Expect = 2.343e-35
Identity = 71/95 (74.74%), Postives = 83/95 (87.37%), Query Frame = 2
Query:    2 TCARVAIGQVLLSVRCKDSNSHHAQEALRRAKFKFPGRQKIIVSRKWGFTKFSRADYLRWKSENRIVPDGVNAKLLGCHGPLAQRQPGRAFLEAT 286
            TCARV IGQVLLSVRCK+SN+ HA+EALRRAKFKFPGRQKII SRKWGFTKF+R +Y++ K+E RI+ DGVNA+LLG HG LA+R PG+AFL  T
Sbjct:  125 TCARVDIGQVLLSVRCKESNAKHAEEALRRAKFKFPGRQKIIHSRKWGFTKFTREEYVKLKAEGRIMSDGVNAQLLGSHGRLAKRAPGKAFLAET 219          
BLAST of BQ623370 vs. ExPASy Swiss-Prot
Match: RL10L_MACFA (60S ribosomal protein L10-like OS=Macaca fascicularis GN=RPL10L PE=2 SV=1)

HSP 1 Score: 98.5969 bits (244), Expect = 1.630e-20
Identity = 46/82 (56.10%), Postives = 59/82 (71.95%), Query Frame = 2
Query:    2 TCARVAIGQVLLSVRCKDSNSHHAQEALRRAKFKFPGRQKIIVSRKWGFTKFSRADYLRWKSENRIVPDGVNAKLLGCHGPL 247
            T ARV IGQV++S+R K  N  H  EALRRAKFKFPGRQKI +S+KWGFTKF+  ++    ++ R++PDG   K +  HGPL
Sbjct:  125 TVARVHIGQVIMSIRTKLQNKEHVIEALRRAKFKFPGRQKIHISKKWGFTKFNADEFEDMVAKKRLIPDGCGVKYVPSHGPL 206          
BLAST of BQ623370 vs. ExPASy Swiss-Prot
Match: RL10_CAEEL (60S ribosomal protein L10 OS=Caenorhabditis elegans GN=rpl-10 PE=2 SV=1)

HSP 1 Score: 97.8265 bits (242), Expect = 2.780e-20
Identity = 48/82 (58.54%), Postives = 58/82 (70.73%), Query Frame = 2
Query:    8 ARVAIGQVLLSVRCKDSNSHHAQEALRRAKFKFPGRQKIIVSRKWGFTKFSRADYLRWKSENRIVPDGVNAKLLGCHGPLAQ 253
            ARV IG +L S+R K+ N  HA EA RRAKFKFPGRQ I+ SRKWGFTK+ R DY R ++E R+  DGV  +L   HGPL +
Sbjct:  127 ARVDIGDILFSMRIKEGNVKHAIEAFRRAKFKFPGRQIIVSSRKWGFTKWDREDYERMRAEGRLRSDGVGVQLQREHGPLTK 208          
BLAST of BQ623370 vs. ExPASy Swiss-Prot
Match: RL10_SHEEP (60S ribosomal protein L10 OS=Ovis aries GN=RPL10 PE=2 SV=1)

HSP 1 Score: 97.4413 bits (241), Expect = 3.631e-20
Identity = 46/82 (56.10%), Postives = 58/82 (70.73%), Query Frame = 2
Query:    2 TCARVAIGQVLLSVRCKDSNSHHAQEALRRAKFKFPGRQKIIVSRKWGFTKFSRADYLRWKSENRIVPDGVNAKLLGCHGPL 247
            T ARV IGQV++S+R K  N  H  EALRRAKFKFPGRQKI +S+KWGFTKF+  ++    +E R++PDG   K +   GPL
Sbjct:  125 TVARVHIGQVIMSIRTKLQNKEHVIEALRRAKFKFPGRQKIHISKKWGFTKFNADEFENMVAEKRLIPDGCGVKYIPNRGPL 206          
BLAST of BQ623370 vs. ExPASy Swiss-Prot
Match: RL10_PIG (60S ribosomal protein L10 OS=Sus scrofa GN=RPL10 PE=2 SV=3)

HSP 1 Score: 97.4413 bits (241), Expect = 3.631e-20
Identity = 46/82 (56.10%), Postives = 58/82 (70.73%), Query Frame = 2
Query:    2 TCARVAIGQVLLSVRCKDSNSHHAQEALRRAKFKFPGRQKIIVSRKWGFTKFSRADYLRWKSENRIVPDGVNAKLLGCHGPL 247
            T ARV IGQV++S+R K  N  H  EALRRAKFKFPGRQKI +S+KWGFTKF+  ++    +E R++PDG   K +   GPL
Sbjct:  125 TVARVHIGQVIMSIRTKLQNKEHVIEALRRAKFKFPGRQKIHISKKWGFTKFNADEFENMVAEKRLIPDGCGVKYIPNRGPL 206          
BLAST of BQ623370 vs. ExPASy Swiss-Prot
Match: RL10_BOVIN (60S ribosomal protein L10 OS=Bos taurus GN=RPL10 PE=2 SV=4)

HSP 1 Score: 97.4413 bits (241), Expect = 3.631e-20
Identity = 46/82 (56.10%), Postives = 58/82 (70.73%), Query Frame = 2
Query:    2 TCARVAIGQVLLSVRCKDSNSHHAQEALRRAKFKFPGRQKIIVSRKWGFTKFSRADYLRWKSENRIVPDGVNAKLLGCHGPL 247
            T ARV IGQV++S+R K  N  H  EALRRAKFKFPGRQKI +S+KWGFTKF+  ++    +E R++PDG   K +   GPL
Sbjct:  125 TVARVHIGQVIMSIRTKLQNKEHVIEALRRAKFKFPGRQKIHISKKWGFTKFNADEFENMVAEKRLIPDGCGVKYIPNRGPL 206          
BLAST of BQ623370 vs. ExPASy Swiss-Prot
Match: RL10_DROME (60S ribosomal protein L10 OS=Drosophila melanogaster GN=Qm PE=2 SV=1)

HSP 1 Score: 97.0561 bits (240), Expect = 4.743e-20
Identity = 48/83 (57.83%), Postives = 56/83 (67.47%), Query Frame = 2
Query:    2 TCARVAIGQVLLSVRCKDSNSHHAQEALRRAKFKFPGRQKIIVSRKWGFTKFSRADYLRWKSENRIVPDGVNAKLLGCHGPLA 250
            T ARV IGQ ++SVR  D       EALRRAKFKFPGRQKI VS+KWGFTK+ R  Y   + +NR+ PDG N K    HGP+A
Sbjct:  125 TVARVRIGQPIMSVRSSDRYKAQVIEALRRAKFKFPGRQKIYVSKKWGFTKYERERYEELRDDNRLEPDGCNVKYRPEHGPIA 207          
BLAST of BQ623370 vs. ExPASy Swiss-Prot
Match: RL10_RAT (60S ribosomal protein L10 OS=Rattus norvegicus GN=Rpl10 PE=1 SV=3)

HSP 1 Score: 96.6709 bits (239), Expect = 6.194e-20
Identity = 46/82 (56.10%), Postives = 58/82 (70.73%), Query Frame = 2
Query:    2 TCARVAIGQVLLSVRCKDSNSHHAQEALRRAKFKFPGRQKIIVSRKWGFTKFSRADYLRWKSENRIVPDGVNAKLLGCHGPL 247
            T ARV IGQV++S+R K  N  H  EALRRAKFKFPGRQKI +S+KWGFTKF+  ++    +E R++PDG   K +   GPL
Sbjct:  125 TVARVHIGQVIMSIRTKLQNKEHVIEALRRAKFKFPGRQKIHISKKWGFTKFNADEFEDMVAEKRLIPDGCGVKYIPNRGPL 206          
The following BLAST results are available for this feature:
BLAST of BQ623370 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 35
Match NameE-valueIdentityDescription
RL102_ORYSI2.503e-3779.7960S ribosomal protein L10-2 OS=Oryza sativa subsp.... [more]
RL101_ORYSJ2.343e-3574.7460S ribosomal protein L10-1 OS=Oryza sativa subsp.... [more]
RL101_ORYSI2.343e-3574.7460S ribosomal protein L10-1 OS=Oryza sativa subsp.... [more]
RL10L_MACFA1.630e-2056.1060S ribosomal protein L10-like OS=Macaca fascicula... [more]
RL10_CAEEL2.780e-2058.5460S ribosomal protein L10 OS=Caenorhabditis elegan... [more]
RL10_SHEEP3.631e-2056.1060S ribosomal protein L10 OS=Ovis aries GN=RPL10 P... [more]
RL10_PIG3.631e-2056.1060S ribosomal protein L10 OS=Sus scrofa GN=RPL10 P... [more]
RL10_BOVIN3.631e-2056.1060S ribosomal protein L10 OS=Bos taurus GN=RPL10 P... [more]
RL10_DROME4.743e-2057.8360S ribosomal protein L10 OS=Drosophila melanogast... [more]
RL10_RAT6.194e-2056.1060S ribosomal protein L10 OS=Rattus norvegicus GN=... [more]

Pages

back to top
Properties
Property NameValue
Genbank descriptionUSDA-FP_00461 Ridge pineapple sweet orange entire seedling Citrus sinensis cDNA clone USDA-FP_00461 5, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>BQ623370 ID=BQ623370; Name=BQ623370; organism=Citrus sinensis; type=EST; length=493bp
AACCTGTGCTCGTGTTGCTATCGGGCAGGTCTTGCTTTCTGTCCGTTGCA
AGGACAGTAACAGCCACCATGCTCAGGAGGCCCTTCGCCGTGCTAAGTTC
AAGTTTCCTGGTCGTCAAAAGATTATTGTCAGCAGGAAATGGGGATTTAC
CAAGTTCAGCCGTGCTGATTATCTGAGGTGGAAGTCGGAGAACAGGATTG
TCCCAGATGGTGTGAATGCCAAGCTTCTCGGATGTCATGGTCCTTTGGCT
CAACGCCAACCTGGAAGAGCTTTCCTGGAAGCAACAACCTAAGATATTTA
CTGTCTCAAAATAGCAGAGCTGTGACTACTGTCTAGTTTATTATTTTCCA
TTTCGTACCTTTTCTCAGTTGAACTGGATTTCTCAAGTTGAAGTGACATG
TTTATTTGGTTTAACTATGTGATCCTTGCAGTTGTCTTAGTGAATTTGCA
ATTTGCACTCTTCTATATGATTTGTATGGTTTATTTTTATTCC
back to top