BQ623370

Overview
NameBQ623370
Unique NameBQ623370
TypeEST
OrganismCitrus sinensis (Sweet orange)
Sequence length493
Libraries
Library NameType
Ridge pineapple sweet orange entire seedlingcdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Alignments
Feature NameTypeLocationAnalysis
Csv1_Contig242 contig Csv1_Contig242:424..916. BLAST: Citrus Unigene V1 Contigs to Prunus persica proteins V1
Homology
BLAST of BQ623370 vs. ExPASy Swiss-Prot
Match: RL10_PAPAN (60S ribosomal protein L10 OS=Papio anubis GN=RPL10 PE=3 SV=1)

HSP 1 Score: 96.6709 bits (239), Expect = 6.194e-20
Identity = 46/82 (56.10%), Postives = 58/82 (70.73%), Query Frame = 2
Query:    2 TCARVAIGQVLLSVRCKDSNSHHAQEALRRAKFKFPGRQKIIVSRKWGFTKFSRADYLRWKSENRIVPDGVNAKLLGCHGPL 247
            T ARV IGQV++S+R K  N  H  EALRRAKFKFPGRQKI +S+KWGFTKF+  ++    +E R++PDG   K +   GPL
Sbjct:  125 TVARVHIGQVIMSIRTKLQNKEHVIEALRRAKFKFPGRQKIHISKKWGFTKFNADEFEDMVAEKRLIPDGCGVKYIPNRGPL 206          
BLAST of BQ623370 vs. ExPASy Swiss-Prot
Match: RL10_MOUSE (60S ribosomal protein L10 OS=Mus musculus GN=Rpl10 PE=2 SV=3)

HSP 1 Score: 96.6709 bits (239), Expect = 6.194e-20
Identity = 46/82 (56.10%), Postives = 58/82 (70.73%), Query Frame = 2
Query:    2 TCARVAIGQVLLSVRCKDSNSHHAQEALRRAKFKFPGRQKIIVSRKWGFTKFSRADYLRWKSENRIVPDGVNAKLLGCHGPL 247
            T ARV IGQV++S+R K  N  H  EALRRAKFKFPGRQKI +S+KWGFTKF+  ++    +E R++PDG   K +   GPL
Sbjct:  125 TVARVHIGQVIMSIRTKLQNKEHVIEALRRAKFKFPGRQKIHISKKWGFTKFNADEFEDMVAEKRLIPDGCGVKYIPNRGPL 206          
BLAST of BQ623370 vs. ExPASy Swiss-Prot
Match: RL10_MACFA (60S ribosomal protein L10 OS=Macaca fascicularis GN=RPL10 PE=2 SV=1)

HSP 1 Score: 96.6709 bits (239), Expect = 6.194e-20
Identity = 46/82 (56.10%), Postives = 58/82 (70.73%), Query Frame = 2
Query:    2 TCARVAIGQVLLSVRCKDSNSHHAQEALRRAKFKFPGRQKIIVSRKWGFTKFSRADYLRWKSENRIVPDGVNAKLLGCHGPL 247
            T ARV IGQV++S+R K  N  H  EALRRAKFKFPGRQKI +S+KWGFTKF+  ++    +E R++PDG   K +   GPL
Sbjct:  125 TVARVHIGQVIMSIRTKLQNKEHVIEALRRAKFKFPGRQKIHISKKWGFTKFNADEFEDMVAEKRLIPDGCGVKYIPNRGPL 206          
BLAST of BQ623370 vs. ExPASy Swiss-Prot
Match: RL10_HUMAN (60S ribosomal protein L10 OS=Homo sapiens GN=RPL10 PE=1 SV=4)

HSP 1 Score: 96.6709 bits (239), Expect = 6.194e-20
Identity = 46/82 (56.10%), Postives = 58/82 (70.73%), Query Frame = 2
Query:    2 TCARVAIGQVLLSVRCKDSNSHHAQEALRRAKFKFPGRQKIIVSRKWGFTKFSRADYLRWKSENRIVPDGVNAKLLGCHGPL 247
            T ARV IGQV++S+R K  N  H  EALRRAKFKFPGRQKI +S+KWGFTKF+  ++    +E R++PDG   K +   GPL
Sbjct:  125 TVARVHIGQVIMSIRTKLQNKEHVIEALRRAKFKFPGRQKIHISKKWGFTKFNADEFEDMVAEKRLIPDGCGVKYIPNRGPL 206          
BLAST of BQ623370 vs. ExPASy Swiss-Prot
Match: RL10_PONAB (60S ribosomal protein L10 OS=Pongo abelii GN=RPL10 PE=2 SV=3)

HSP 1 Score: 95.5153 bits (236), Expect = 1.380e-19
Identity = 46/82 (56.10%), Postives = 57/82 (69.51%), Query Frame = 2
Query:    2 TCARVAIGQVLLSVRCKDSNSHHAQEALRRAKFKFPGRQKIIVSRKWGFTKFSRADYLRWKSENRIVPDGVNAKLLGCHGPL 247
            T ARV IGQV++S+R K  N  H  EALRRAKFKFPGRQKI +S+KWGFTKF+  ++    +E R++PDG   K     GPL
Sbjct:  125 TVARVHIGQVIMSIRTKLQNKEHVIEALRRAKFKFPGRQKIHISKKWGFTKFNADEFEDMVAEKRLIPDGCGVKYTPNRGPL 206          
BLAST of BQ623370 vs. ExPASy Swiss-Prot
Match: RL10L_HUMAN (60S ribosomal protein L10-like OS=Homo sapiens GN=RPL10L PE=1 SV=3)

HSP 1 Score: 95.5153 bits (236), Expect = 1.380e-19
Identity = 45/82 (54.88%), Postives = 58/82 (70.73%), Query Frame = 2
Query:    2 TCARVAIGQVLLSVRCKDSNSHHAQEALRRAKFKFPGRQKIIVSRKWGFTKFSRADYLRWKSENRIVPDGVNAKLLGCHGPL 247
            T ARV IGQV++S+R K  N  H  EALRRAKFKFPGRQKI +S+KWGFTKF+  ++    ++  ++PDG   K +  HGPL
Sbjct:  125 TVARVHIGQVIMSIRTKLQNEEHVIEALRRAKFKFPGRQKIHISKKWGFTKFNADEFEDMVAKKCLIPDGCGVKYVPSHGPL 206          
BLAST of BQ623370 vs. ExPASy Swiss-Prot
Match: RL10_DICDI (60S ribosomal protein L10 OS=Dictyostelium discoideum GN=rpl10 PE=3 SV=2)

HSP 1 Score: 95.1301 bits (235), Expect = 1.802e-19
Identity = 43/84 (51.19%), Postives = 62/84 (73.81%), Query Frame = 2
Query:    2 TCARVAIGQVLLSVRCKDSNSHHAQEALRRAKFKFPGRQKIIVSRKWGFTKFSRADYLRWKSENRIVPDGVNAKLLGCHGPLAQ 253
            T ARV IGQ++ S+R +D+   +  EALRR+ +KFPGRQKI+VS+KWGFT ++R  Y + K++ R++ DG N K++  HG LAQ
Sbjct:  125 TVARVNIGQIIFSIRTRDNMLANVVEALRRSSYKFPGRQKIVVSKKWGFTAYNREAYQKLKADGRLMNDGANVKVITNHGTLAQ 208          
BLAST of BQ623370 vs. ExPASy Swiss-Prot
Match: RL10_CHICK (60S ribosomal protein L10 (Fragment) OS=Gallus gallus GN=RPL10 PE=2 SV=1)

HSP 1 Score: 94.3597 bits (233), Expect = 3.074e-19
Identity = 44/82 (53.66%), Postives = 57/82 (69.51%), Query Frame = 2
Query:    2 TCARVAIGQVLLSVRCKDSNSHHAQEALRRAKFKFPGRQKIIVSRKWGFTKFSRADYLRWKSENRIVPDGVNAKLLGCHGPL 247
            T ARV +GQV++S+R K  N  H  EALRRAKFKFPGRQKI +S+KWGFTKF+   +    ++ R++PDG   K +   GPL
Sbjct:  120 TVARVHMGQVIMSIRTKAQNKEHVVEALRRAKFKFPGRQKIHISKKWGFTKFNADAFEEMVAQKRLIPDGCGVKYVPGRGPL 201          
BLAST of BQ623370 vs. ExPASy Swiss-Prot
Match: RL10B_SCHPO (60S ribosomal protein L10-B OS=Schizosaccharomyces pombe GN=rpl10b PE=2 SV=1)

HSP 1 Score: 94.3597 bits (233), Expect = 3.074e-19
Identity = 45/83 (54.22%), Postives = 62/83 (74.70%), Query Frame = 2
Query:    8 ARVAIGQVLLSVRCKDSNSHHAQEALRRAKFKFPGRQKIIVSRKWGFTKFSRADYLRWKSENRIVPDGVNAKLLGCHGPLAQR 256
            ARV IGQVL+SVR KDS+   A EALRR ++KFPG+Q+IIVS+KWGF++++R +Y+  +S   I+PDG  AK L   G L ++
Sbjct:  127 ARVNIGQVLMSVRTKDSSRATAIEALRRCQYKFPGQQRIIVSKKWGFSQYARDEYIEKRSRGEIIPDGCYAKFLNKRGSLQEK 209          
BLAST of BQ623370 vs. ExPASy Swiss-Prot
Match: RL10L_BOVIN (60S ribosomal protein L10-like OS=Bos taurus GN=RPL10L PE=2 SV=1)

HSP 1 Score: 93.9745 bits (232), Expect = 4.015e-19
Identity = 45/82 (54.88%), Postives = 58/82 (70.73%), Query Frame = 2
Query:    2 TCARVAIGQVLLSVRCKDSNSHHAQEALRRAKFKFPGRQKIIVSRKWGFTKFSRADYLRWKSENRIVPDGVNAKLLGCHGPL 247
            T ARV IGQV++S+R K  N  H  EALRRAKFKFPGRQKI +S+KWGFTKF+  ++    ++ R++PDG   K +   GPL
Sbjct:  125 TVARVHIGQVIMSIRTKLQNKEHVIEALRRAKFKFPGRQKIHISKKWGFTKFNADEFEDKVAKKRLIPDGCGVKYVPNRGPL 206          
The following BLAST results are available for this feature:
BLAST of BQ623370 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 35
Match NameE-valueIdentityDescription
RL10_PAPAN6.194e-2056.1060S ribosomal protein L10 OS=Papio anubis GN=RPL10... [more]
RL10_MOUSE6.194e-2056.1060S ribosomal protein L10 OS=Mus musculus GN=Rpl10... [more]
RL10_MACFA6.194e-2056.1060S ribosomal protein L10 OS=Macaca fascicularis G... [more]
RL10_HUMAN6.194e-2056.1060S ribosomal protein L10 OS=Homo sapiens GN=RPL10... [more]
RL10_PONAB1.380e-1956.1060S ribosomal protein L10 OS=Pongo abelii GN=RPL10... [more]
RL10L_HUMAN1.380e-1954.8860S ribosomal protein L10-like OS=Homo sapiens GN=... [more]
RL10_DICDI1.802e-1951.1960S ribosomal protein L10 OS=Dictyostelium discoid... [more]
RL10_CHICK3.074e-1953.6660S ribosomal protein L10 (Fragment) OS=Gallus gal... [more]
RL10B_SCHPO3.074e-1954.2260S ribosomal protein L10-B OS=Schizosaccharomyces... [more]
RL10L_BOVIN4.015e-1954.8860S ribosomal protein L10-like OS=Bos taurus GN=RP... [more]

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Properties
Property NameValue
Genbank descriptionUSDA-FP_00461 Ridge pineapple sweet orange entire seedling Citrus sinensis cDNA clone USDA-FP_00461 5, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>BQ623370 ID=BQ623370; Name=BQ623370; organism=Citrus sinensis; type=EST; length=493bp
AACCTGTGCTCGTGTTGCTATCGGGCAGGTCTTGCTTTCTGTCCGTTGCA
AGGACAGTAACAGCCACCATGCTCAGGAGGCCCTTCGCCGTGCTAAGTTC
AAGTTTCCTGGTCGTCAAAAGATTATTGTCAGCAGGAAATGGGGATTTAC
CAAGTTCAGCCGTGCTGATTATCTGAGGTGGAAGTCGGAGAACAGGATTG
TCCCAGATGGTGTGAATGCCAAGCTTCTCGGATGTCATGGTCCTTTGGCT
CAACGCCAACCTGGAAGAGCTTTCCTGGAAGCAACAACCTAAGATATTTA
CTGTCTCAAAATAGCAGAGCTGTGACTACTGTCTAGTTTATTATTTTCCA
TTTCGTACCTTTTCTCAGTTGAACTGGATTTCTCAAGTTGAAGTGACATG
TTTATTTGGTTTAACTATGTGATCCTTGCAGTTGTCTTAGTGAATTTGCA
ATTTGCACTCTTCTATATGATTTGTATGGTTTATTTTTATTCC
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