BQ623370

Overview
NameBQ623370
Unique NameBQ623370
TypeEST
OrganismCitrus sinensis (Sweet orange)
Sequence length493
Libraries
Library NameType
Ridge pineapple sweet orange entire seedlingcdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Alignments
Feature NameTypeLocationAnalysis
Csv1_Contig242 contig Csv1_Contig242:424..916. BLAST: Citrus Unigene V1 Contigs to Prunus persica proteins V1
Homology
BLAST of BQ623370 vs. ExPASy Swiss-Prot
Match: RL10A_SCHPO (60S ribosomal protein L10-A OS=Schizosaccharomyces pombe GN=rpl10a PE=2 SV=2)

HSP 1 Score: 93.9745 bits (232), Expect = 4.015e-19
Identity = 44/83 (53.01%), Postives = 62/83 (74.70%), Query Frame = 2
Query:    8 ARVAIGQVLLSVRCKDSNSHHAQEALRRAKFKFPGRQKIIVSRKWGFTKFSRADYLRWKSENRIVPDGVNAKLLGCHGPLAQR 256
            ARV IGQ+L+SVR KDS+   A EALRR ++KFPG+Q+IIVS+KWGF++++R +Y+  +S   I+PDG  AK L   G L ++
Sbjct:  127 ARVNIGQILMSVRTKDSSRATAIEALRRCQYKFPGQQRIIVSKKWGFSQYARDEYIEKRSRGEIIPDGCYAKFLNKRGSLQEK 209          
BLAST of BQ623370 vs. ExPASy Swiss-Prot
Match: RL10L_MOUSE (60S ribosomal protein L10-like OS=Mus musculus GN=Rpl10l PE=2 SV=1)

HSP 1 Score: 93.2041 bits (230), Expect = 6.848e-19
Identity = 45/82 (54.88%), Postives = 57/82 (69.51%), Query Frame = 2
Query:    2 TCARVAIGQVLLSVRCKDSNSHHAQEALRRAKFKFPGRQKIIVSRKWGFTKFSRADYLRWKSENRIVPDGVNAKLLGCHGPL 247
            T ARV IGQV++S+R K  N  H  EALRRAKFKFPGRQKI +S+KWGFTKF+  ++    +  R++PDG   K +   GPL
Sbjct:  125 TVARVHIGQVIMSIRTKLQNKEHVIEALRRAKFKFPGRQKIHISKKWGFTKFNADEFEDKVAAKRLIPDGCGVKYIPERGPL 206          
BLAST of BQ623370 vs. ExPASy Swiss-Prot
Match: RL10_BOMMA (60S ribosomal protein L10 OS=Bombyx mandarina GN=RpL10 PE=2 SV=1)

HSP 1 Score: 87.0409 bits (214), Expect = 4.908e-17
Identity = 44/82 (53.66%), Postives = 54/82 (65.85%), Query Frame = 2
Query:    2 TCARVAIGQVLLSVRCKDSNSHHAQEALRRAKFKFPGRQKIIVSRKWGFTKFSRADYLRWKSENRIVPDGVNAKLLGCHGPL 247
            T ARV IGQ ++SVR  D       EALRRAKFKFPGRQKI VS+KWGFTK+ R ++ + + E R+  DG   +    HGPL
Sbjct:  125 TVARVRIGQPIMSVRSSDRWKAQVIEALRRAKFKFPGRQKIYVSKKWGFTKYERDEFEKLREEGRLANDGCIVQYRPEHGPL 206          
BLAST of BQ623370 vs. ExPASy Swiss-Prot
Match: RL10_YEAST (60S ribosomal protein L10 OS=Saccharomyces cerevisiae GN=RPL10 PE=1 SV=1)

HSP 1 Score: 85.1149 bits (209), Expect = 1.865e-16
Identity = 41/80 (51.25%), Postives = 52/80 (65.00%), Query Frame = 2
Query:    8 ARVAIGQVLLSVRCKDSNSHHAQEALRRAKFKFPGRQKIIVSRKWGFTKFSRADYLRWKSENRIVPDGVNAKLLGCHGPL 247
            ARV IGQ++ SVR KDSN     E LRRA++KFPG+QKII+S+KWGFT   R +YL+ +    +  DG   K L   G L
Sbjct:  127 ARVDIGQIIFSVRTKDSNKDVVVEGLRRARYKFPGQQKIILSKKWGFTNLDRPEYLKKREAGEVKDDGAFVKFLSKKGSL 206          
BLAST of BQ623370 vs. ExPASy Swiss-Prot
Match: RL10_EUGGR (60S ribosomal protein L10 OS=Euglena gracilis GN=RPL10 PE=2 SV=1)

HSP 1 Score: 72.7886 bits (177), Expect = 9.578e-13
Identity = 38/88 (43.18%), Postives = 52/88 (59.09%), Query Frame = 2
Query:    8 ARVAIGQVLLSVRCKDSNSHHAQEALRRAKFKFPGRQKIIVSRKWGFTKFSRADYLRWKSENRIVPDGVNAKLLGCHGPLAQRQPGRA 271
            ARV IGQ L+S+R K  +      AL+RA +KF GRQ I  S  WGFT+    +Y++WK E +   DGV+ K+L   G L + +  RA
Sbjct:  127 ARVRIGQPLMSIRVKPQHEAVVVAALKRASYKFAGRQVIAKSTMWGFTEIRSENYVKWKEEGKFRVDGVSTKILRNRGRLHRAKRVRA 214          
The following BLAST results are available for this feature:
BLAST of BQ623370 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 35
Match NameE-valueIdentityDescription
RL10A_SCHPO4.015e-1953.0160S ribosomal protein L10-A OS=Schizosaccharomyces... [more]
RL10L_MOUSE6.848e-1954.8860S ribosomal protein L10-like OS=Mus musculus GN=... [more]
RL10_BOMMA4.908e-1753.6660S ribosomal protein L10 OS=Bombyx mandarina GN=R... [more]
RL10_YEAST1.865e-1651.2560S ribosomal protein L10 OS=Saccharomyces cerevis... [more]
RL10_EUGGR9.578e-1343.1860S ribosomal protein L10 OS=Euglena gracilis GN=R... [more]

Pages

back to top
Properties
Property NameValue
Genbank descriptionUSDA-FP_00461 Ridge pineapple sweet orange entire seedling Citrus sinensis cDNA clone USDA-FP_00461 5, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>BQ623370 ID=BQ623370; Name=BQ623370; organism=Citrus sinensis; type=EST; length=493bp
AACCTGTGCTCGTGTTGCTATCGGGCAGGTCTTGCTTTCTGTCCGTTGCA
AGGACAGTAACAGCCACCATGCTCAGGAGGCCCTTCGCCGTGCTAAGTTC
AAGTTTCCTGGTCGTCAAAAGATTATTGTCAGCAGGAAATGGGGATTTAC
CAAGTTCAGCCGTGCTGATTATCTGAGGTGGAAGTCGGAGAACAGGATTG
TCCCAGATGGTGTGAATGCCAAGCTTCTCGGATGTCATGGTCCTTTGGCT
CAACGCCAACCTGGAAGAGCTTTCCTGGAAGCAACAACCTAAGATATTTA
CTGTCTCAAAATAGCAGAGCTGTGACTACTGTCTAGTTTATTATTTTCCA
TTTCGTACCTTTTCTCAGTTGAACTGGATTTCTCAAGTTGAAGTGACATG
TTTATTTGGTTTAACTATGTGATCCTTGCAGTTGTCTTAGTGAATTTGCA
ATTTGCACTCTTCTATATGATTTGTATGGTTTATTTTTATTCC
back to top