BQ623375

Overview
NameBQ623375
Unique NameBQ623375
TypeEST
OrganismCitrus sinensis (Sweet orange)
Sequence length573
Libraries
Library NameType
Ridge pineapple sweet orange entire seedlingcdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Alignments
Feature NameTypeLocationAnalysis
Csv1_Contig1825 contig Csv1_Contig1825:37..608. BLAST: Citrus Unigene V1 Contigs to Prunus persica proteins V1
Homology
BLAST of BQ623375 vs. ExPASy Swiss-Prot
Match: RS23_YEAST (40S ribosomal protein S23 OS=Saccharomyces cerevisiae GN=RPS23A PE=1 SV=1)

HSP 1 Score: 221.861 bits (564), Expect = 1.809e-57
Identity = 108/142 (76.06%), Postives = 123/142 (86.62%), Query Frame = 3
Query:   66 GRHRGMGAGRKLKSHRRRQRWADKSYKKSHLGNEWKK-PFAGSSHAKGIVLEKIGIEAKQPNSAIRKCARVQLIKNGKKIAAFVPNDGCLNYIEENDEVLIAGFGRKGHAVGDIPGVRFKGVKVSGVSLLALFKEKKEKPRS 488
            G+ RG+ + RKL+ HRR  RWA+ +YKK  LG  +K  PF GSSHAKGIVLEK+GIE+KQPNSAIRKC RVQLIKNGKK+ AFVPNDGCLN+++ENDEVL+AGFGRKG A GDIPGVRFK VKVSGVSLLAL+KEKKEKPRS
Sbjct:    4 GKPRGLNSARKLRVHRRNNRWAENNYKKRLLGTAFKSSPFGGSSHAKGIVLEKLGIESKQPNSAIRKCVRVQLIKNGKKVTAFVPNDGCLNFVDENDEVLLAGFGRKGKAKGDIPGVRFKVVKVSGVSLLALWKEKKEKPRS 145          
BLAST of BQ623375 vs. ExPASy Swiss-Prot
Match: RS23_SACCA (40S ribosomal protein S23 OS=Saccharomyces castellii GN=RPS23A PE=3 SV=1)

HSP 1 Score: 221.861 bits (564), Expect = 1.809e-57
Identity = 108/142 (76.06%), Postives = 123/142 (86.62%), Query Frame = 3
Query:   66 GRHRGMGAGRKLKSHRRRQRWADKSYKKSHLGNEWKK-PFAGSSHAKGIVLEKIGIEAKQPNSAIRKCARVQLIKNGKKIAAFVPNDGCLNYIEENDEVLIAGFGRKGHAVGDIPGVRFKGVKVSGVSLLALFKEKKEKPRS 488
            G+ RG+ + RKL+ HRR  RWA+ +YKK  LG  +K  PF GSSHAKGIVLEK+GIE+KQPNSAIRKC RVQLIKNGKK+ AFVPNDGCLN+++ENDEVL+AGFGRKG A GDIPGVRFK VKVSGVSLLAL+KEKKEKPRS
Sbjct:    4 GKPRGLNSARKLRVHRRNNRWAENNYKKRLLGTAFKSSPFGGSSHAKGIVLEKLGIESKQPNSAIRKCVRVQLIKNGKKVTAFVPNDGCLNFVDENDEVLLAGFGRKGKAKGDIPGVRFKVVKVSGVSLLALWKEKKEKPRS 145          
BLAST of BQ623375 vs. ExPASy Swiss-Prot
Match: RS23_SACBA (40S ribosomal protein S23 OS=Saccharomyces bayanus GN=RPS23A PE=3 SV=1)

HSP 1 Score: 221.861 bits (564), Expect = 1.809e-57
Identity = 108/142 (76.06%), Postives = 123/142 (86.62%), Query Frame = 3
Query:   66 GRHRGMGAGRKLKSHRRRQRWADKSYKKSHLGNEWKK-PFAGSSHAKGIVLEKIGIEAKQPNSAIRKCARVQLIKNGKKIAAFVPNDGCLNYIEENDEVLIAGFGRKGHAVGDIPGVRFKGVKVSGVSLLALFKEKKEKPRS 488
            G+ RG+ + RKL+ HRR  RWA+ +YKK  LG  +K  PF GSSHAKGIVLEK+GIE+KQPNSAIRKC RVQLIKNGKK+ AFVPNDGCLN+++ENDEVL+AGFGRKG A GDIPGVRFK VKVSGVSLLAL+KEKKEKPRS
Sbjct:    4 GKPRGLNSARKLRVHRRNNRWAENNYKKRLLGTAFKSSPFGGSSHAKGIVLEKLGIESKQPNSAIRKCVRVQLIKNGKKVTAFVPNDGCLNFVDENDEVLLAGFGRKGKAKGDIPGVRFKVVKVSGVSLLALWKEKKEKPRS 145          
BLAST of BQ623375 vs. ExPASy Swiss-Prot
Match: RS23_CANGA (40S ribosomal protein S23 OS=Candida glabrata GN=RPS23 PE=3 SV=1)

HSP 1 Score: 221.861 bits (564), Expect = 1.809e-57
Identity = 108/142 (76.06%), Postives = 123/142 (86.62%), Query Frame = 3
Query:   66 GRHRGMGAGRKLKSHRRRQRWADKSYKKSHLGNEWKK-PFAGSSHAKGIVLEKIGIEAKQPNSAIRKCARVQLIKNGKKIAAFVPNDGCLNYIEENDEVLIAGFGRKGHAVGDIPGVRFKGVKVSGVSLLALFKEKKEKPRS 488
            G+ RG+ + RKL+ HRR  RWA+ +YKK  LG  +K  PF GSSHAKGIVLEK+GIE+KQPNSAIRKC RVQLIKNGKK+ AFVPNDGCLN+++ENDEVL+AGFGRKG A GDIPGVRFK VKVSGVSLLAL+KEKKEKPRS
Sbjct:    4 GKPRGLNSARKLRVHRRNNRWAENNYKKRLLGTAFKSSPFGGSSHAKGIVLEKLGIESKQPNSAIRKCVRVQLIKNGKKVTAFVPNDGCLNFVDENDEVLLAGFGRKGKAKGDIPGVRFKVVKVSGVSLLALWKEKKEKPRS 145          
BLAST of BQ623375 vs. ExPASy Swiss-Prot
Match: RS23_CIOIN (40S ribosomal protein S23 OS=Ciona intestinalis GN=RPS23 PE=2 SV=1)

HSP 1 Score: 215.698 bits (548), Expect = 1.296e-55
Identity = 108/142 (76.06%), Postives = 117/142 (82.39%), Query Frame = 3
Query:   66 GRHRGMGAGRKLKSHRRRQRWADKSYKKSHLGNEWK-KPFAGSSHAKGIVLEKIGIEAKQPNSAIRKCARVQLIKNGKKIAAFVPNDGCLNYIEENDEVLIAGFGRKGHAVGDIPGVRFKGVKVSGVSLLALFKEKKEKPRS 488
            G+  G+   RKL + RR Q+W D  YKKSHLG   K  PF G+SHAKGIVLEKIG+EAKQPNSAIRKC RVQLIKNGKKI AFVPNDGCLNYIEENDEVL+AGFGR GHAVGDIPGVRFK VKV+ VSL ALF  KKE+PRS
Sbjct:    2 GKPSGLRCARKLXNRRRDQKWHDXXYKKSHLGTALKANPFGGASHAKGIVLEKIGVEAKQPNSAIRKCVRVQLIKNGKKITAFVPNDGCLNYIEENDEVLVAGFGRSGHAVGDIPGVRFKIVKVANVSLHALFTGKKERPRS 143          
BLAST of BQ623375 vs. ExPASy Swiss-Prot
Match: RS23_GILMI (40S ribosomal protein S23 OS=Gillichthys mirabilis GN=rps23 PE=2 SV=1)

HSP 1 Score: 215.312 bits (547), Expect = 1.693e-55
Identity = 103/142 (72.54%), Postives = 120/142 (84.51%), Query Frame = 3
Query:   66 GRHRGMGAGRKLKSHRRRQRWADKSYKKSHLGNEWK-KPFAGSSHAKGIVLEKIGIEAKQPNSAIRKCARVQLIKNGKKIAAFVPNDGCLNYIEENDEVLIAGFGRKGHAVGDIPGVRFKGVKVSGVSLLALFKEKKEKPRS 488
            G+ RG+   RKL++HRR Q+W DK YKK+HLG   K  PF  +SHAKGIVLEK+G+EAKQPNSAIRKC RVQLIKNGKKI AFVPNDGCLN+ EENDEVL+AGFGRK HAVGDIPGVRFK V+++ VSLLAL+K  KE+P+S
Sbjct:    2 GKCRGLRTARKLRNHRREQKWHDKQYKKAHLGTALKANPFGSASHAKGIVLEKVGVEAKQPNSAIRKCVRVQLIKNGKKITAFVPNDGCLNFXEENDEVLVAGFGRKXHAVGDIPGVRFKVVEMANVSLLALYKGXKERPKS 143          
BLAST of BQ623375 vs. ExPASy Swiss-Prot
Match: RS23_SCHPO (40S ribosomal protein S23 OS=Schizosaccharomyces pombe GN=rps23a PE=2 SV=2)

HSP 1 Score: 214.157 bits (544), Expect = 3.772e-55
Identity = 103/142 (72.54%), Postives = 120/142 (84.51%), Query Frame = 3
Query:   66 GRHRGMGAGRKLKSHRRRQRWADKSYKKSHLGNEWKK-PFAGSSHAKGIVLEKIGIEAKQPNSAIRKCARVQLIKNGKKIAAFVPNDGCLNYIEENDEVLIAGFGRKGHAVGDIPGVRFKGVKVSGVSLLALFKEKKEKPRS 488
            G+  G+ A RKL++HRR +RWAD  YKK  LG  +K  PF GSSHAKGIV+EKIG+EAKQPNSAIRKC RVQLIKNGKK+ AFVP+DGCLN+++ENDEVL++GFGRKG A GDIPGVRFK VKV+GV L ALF EKKEKPR+
Sbjct:    2 GKPAGLNAARKLRNHRREERWADAHYKKRLLGTAYKSSPFGGSSHAKGIVVEKIGVEAKQPNSAIRKCVRVQLIKNGKKVTAFVPHDGCLNFVDENDEVLLSGFGRKGKAKGDIPGVRFKVVKVAGVGLSALFHEKKEKPRA 143          
BLAST of BQ623375 vs. ExPASy Swiss-Prot
Match: RS12_TETTH (40S ribosomal protein S12 OS=Tetrahymena thermophila PE=3 SV=1)

HSP 1 Score: 205.297 bits (521), Expect = 1.752e-52
Identity = 98/138 (71.01%), Postives = 113/138 (81.88%), Query Frame = 3
Query:   66 GRHRGMGAGRKLKSHRRRQRWADKSYKKSHLGNEWKKPFAGSSHAKGIVLEKIGIEAKQPNSAIRKCARVQLIKNGKKIAAFVPNDGCLNYIEENDEVLIAGFGRKGHAVGDIPGVRFKGVKVSGVSLLALFKEKKEK 479
            G+ RG+ AGRKL  HR+ QRWAD  + K  LG+ W+ PF G+SHAKG+V EKIGIE+KQPNSA+RKC RV L KN KKIAAFVP DGCLN++ ENDEVL+AG GR+GHAVGDIPGVRFK V V G+SLLALFK KKEK
Sbjct:    4 GKPRGIRAGRKLARHRKDQRWADNDFNKRLLGSRWRNPFMGASHAKGLVTEKIGIESKQPNSAVRKCVRVLLRKNSKKIAAFVPMDGCLNFLAENDEVLVAGLGRQGHAVGDIPGVRFKVVCVKGISLLALFKGKKEK 141          
BLAST of BQ623375 vs. ExPASy Swiss-Prot
Match: RS23_DICDI (40S ribosomal protein S23 OS=Dictyostelium discoideum GN=rps23 PE=3 SV=1)

HSP 1 Score: 201.06 bits (510), Expect = 3.304e-51
Identity = 96/140 (68.57%), Postives = 114/140 (81.43%), Query Frame = 3
Query:   66 GRHRGMGAGRKLKSHRRRQRWADKSYKKSHLGNEWK-KPFAGSSHAKGIVLEKIGIEAKQPNSAIRKCARVQLIKNGKKIAAFVPNDGCLNYIEENDEVLIAGFGRKGHAVGDIPGVRFKGVKVSGVSLLALFKEKKEKP 482
            G+  G+   RKL++HRR QRW DK YKK+H G   K  PF G+SHA GIV+ ++GIEAKQPNSAIRKC RVQL KNGKKI AFVPNDGCLNYI+END+VL+AG GR GH+VGDIPGVRFK VKVS VSL+A+++  K+KP
Sbjct:    2 GKPNGLKTARKLRNHRRVQRWNDKLYKKAHFGTALKANPFGGASHASGIVVSRLGIEAKQPNSAIRKCVRVQLKKNGKKITAFVPNDGCLNYIQENDKVLVAGLGRSGHSVGDIPGVRFKVVKVSSVSLIAIYRGIKDKP 141          
BLAST of BQ623375 vs. ExPASy Swiss-Prot
Match: RS12_CENSY (30S ribosomal protein S12P OS=Cenarchaeum symbiosum GN=rps12p PE=3 SV=1)

HSP 1 Score: 162.155 bits (409), Expect = 1.701e-39
Identity = 83/138 (60.14%), Postives = 103/138 (74.64%), Query Frame = 3
Query:   78 GMGAGRKLKSHRRRQRWADKSYKKSHLGNEWK-KPFAGSSHAKGIVLEKIGIEAKQPNSAIRKCARVQLIKNGKKIAAFVPNDGCLNYIEENDEVLIAGFG-RKGHAVGDIPGVRFKGVKVSGVSLLALFKEKKEKPR 485
            G+ AGR LK+ ++RQRW+   YK+  LG + K  P  GS  A+GIVLEK+G+EAKQPNSA+RKC RVQLIKNGK I AF+P DG +N+I+E+DEV + G G  +G A+GDIPGVRFK  KV+G SL  L   KKEKPR
Sbjct:    7 GLFAGRVLKAKKKRQRWSISRYKRRELGLDRKANPMGGSPQARGIVLEKVGVEAKQPNSAVRKCVRVQLIKNGKSITAFLPRDGAMNFIDEHDEVHVEGMGATQGGAMGDIPGVRFKVFKVNGTSLHELVIGKKEKPR 144          
The following BLAST results are available for this feature:
BLAST of BQ623375 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 78
Match NameE-valueIdentityDescription
RS23_YEAST1.809e-5776.0640S ribosomal protein S23 OS=Saccharomyces cerevis... [more]
RS23_SACCA1.809e-5776.0640S ribosomal protein S23 OS=Saccharomyces castell... [more]
RS23_SACBA1.809e-5776.0640S ribosomal protein S23 OS=Saccharomyces bayanus... [more]
RS23_CANGA1.809e-5776.0640S ribosomal protein S23 OS=Candida glabrata GN=R... [more]
RS23_CIOIN1.296e-5576.0640S ribosomal protein S23 OS=Ciona intestinalis GN... [more]
RS23_GILMI1.693e-5572.5440S ribosomal protein S23 OS=Gillichthys mirabilis... [more]
RS23_SCHPO3.772e-5572.5440S ribosomal protein S23 OS=Schizosaccharomyces p... [more]
RS12_TETTH1.752e-5271.0140S ribosomal protein S12 OS=Tetrahymena thermophi... [more]
RS23_DICDI3.304e-5168.5740S ribosomal protein S23 OS=Dictyostelium discoid... [more]
RS12_CENSY1.701e-3960.1430S ribosomal protein S12P OS=Cenarchaeum symbiosu... [more]

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Properties
Property NameValue
Genbank descriptionUSDA-FP_00466 Ridge pineapple sweet orange entire seedling Citrus sinensis cDNA clone USDA-FP_00466 5, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>BQ623375 ID=BQ623375; Name=BQ623375; organism=Citrus sinensis; type=EST; length=573bp
TTGCAACTCTCAAGCTCCAAAGTCGTTCGTTACAGTCAAAAATCCTCTTC
GTAACGCCAACATGGGGAAGACATCGTGGAATGGGAGCGGGTCGCAAGCT
GAAGAGCCACCGCAGAAGACAAAGGTGGGCTGATAAGTCATACAAGAAAT
CCCACCTTGGCAATGAATGGAAGAAGCCATTTGCTGGCTCTTCCCATGCA
AAAGGCATTGTTCTTGAGAAAATCGGTATCGAGGCAAAGCAGCCCAACTC
CGCTATCAGAAAATGTGCTCGAGTTCAGCTGATCAAGAATGGAAAGAAGA
TTGCAGCTTTCGTACCAAACGATGGTTGTTTGAACTACATTGAAGAAAAT
GACGAGGTACTTATTGCAGGATTTGGTCGAAAGGGGCATGCTGTGGGAGA
TATTCCTGGTGTTAGATTTAAGGGTGTCAAGGTTTCAGGCGTGTCTCTTC
TGGCCCTCTTCAAGGAGAAGAAGGAGAAACCCAGATCCTAAACTCCTGAT
TCAAGATACTTCACCATGTTTTCTTTTTTTAGCACTTTATTTTCATTAAT
CCCCGTTGATTACTGGTTTCCTT
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