BQ623378

Overview
NameBQ623378
Unique NameBQ623378
TypeEST
OrganismCitrus sinensis (Sweet orange)
Sequence length349
Libraries
Library NameType
Ridge pineapple sweet orange entire seedlingcdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Alignments
Feature NameTypeLocationAnalysis
Csv1_Contig9540 contig Csv1_Contig9540:653..1000. BLAST: Citrus Unigene V1 Contigs to Prunus persica proteins V1
Homology
BLAST of BQ623378 vs. ExPASy Swiss-Prot
Match: CB28_PEA (Chlorophyll a-b binding protein 8, chloroplastic OS=Pisum sativum GN=CAB8 PE=1 SV=1)

HSP 1 Score: 148.288 bits (373), Expect = 1.165e-35
Identity = 69/73 (94.52%), Postives = 73/73 (100.00%), Query Frame = 2
Query:   20 AFDPLGLADDPEAFAELKVKEIKNGRLAMFSMFGFFVQAIVTGKGPLENLADHLADPVNNNAWAYATNFVPGK 238
            +FDPLGLADDPEAFAELKVKE+KNGRLAMFSMFGFFVQAIVTGKGPLENLADHL+DPVNNNAW+YATNFVPGK
Sbjct:  196 SFDPLGLADDPEAFAELKVKELKNGRLAMFSMFGFFVQAIVTGKGPLENLADHLSDPVNNNAWSYATNFVPGK 268          
BLAST of BQ623378 vs. ExPASy Swiss-Prot
Match: CB21_PETSP (Chlorophyll a-b binding protein 13, chloroplastic OS=Petunia sp. GN=CAB13 PE=3 SV=1)

HSP 1 Score: 148.288 bits (373), Expect = 1.165e-35
Identity = 70/73 (95.89%), Postives = 73/73 (100.00%), Query Frame = 2
Query:   20 AFDPLGLADDPEAFAELKVKEIKNGRLAMFSMFGFFVQAIVTGKGPLENLADHLADPVNNNAWAYATNFVPGK 238
            +FDPLGLADDPEAFAEL+VKEIKNGRLAMFSMFGFFVQAIVTGKGPLENLADHLADPVNNNAWA+ATNFVPGK
Sbjct:  194 SFDPLGLADDPEAFAELEVKEIKNGRLAMFSMFGFFVQAIVTGKGPLENLADHLADPVNNNAWAFATNFVPGK 266          
BLAST of BQ623378 vs. ExPASy Swiss-Prot
Match: CB29_MAIZE (Chlorophyll a-b binding protein M9, chloroplastic OS=Zea mays GN=CAB-M9 PE=2 SV=1)

HSP 1 Score: 147.902 bits (372), Expect = 1.522e-35
Identity = 69/72 (95.83%), Postives = 72/72 (100.00%), Query Frame = 2
Query:   23 FDPLGLADDPEAFAELKVKEIKNGRLAMFSMFGFFVQAIVTGKGPLENLADHLADPVNNNAWAYATNFVPGK 238
            FDPLGLADDPEAFA++KVKE+KNGRLAMFSMFGFFVQAIVTGKGPLENLADHLADPVNNNAWAYATNFVPGK
Sbjct:  194 FDPLGLADDPEAFADVKVKELKNGRLAMFSMFGFFVQAIVTGKGPLENLADHLADPVNNNAWAYATNFVPGK 265          
BLAST of BQ623378 vs. ExPASy Swiss-Prot
Match: CB25_NICPL (Chlorophyll a-b binding protein E, chloroplastic OS=Nicotiana plumbaginifolia GN=CABE PE=3 SV=1)

HSP 1 Score: 147.902 bits (372), Expect = 1.522e-35
Identity = 69/73 (94.52%), Postives = 73/73 (100.00%), Query Frame = 2
Query:   20 AFDPLGLADDPEAFAELKVKEIKNGRLAMFSMFGFFVQAIVTGKGPLENLADHLADPVNNNAWAYATNFVPGK 238
            +FDPLGLA+DPEAFAELKVKEIKNGRLAMFSMFGFFVQA+VTGKGPLENLADHLADPVNNNAW+YATNFVPGK
Sbjct:  194 SFDPLGLAEDPEAFAELKVKEIKNGRLAMFSMFGFFVQALVTGKGPLENLADHLADPVNNNAWSYATNFVPGK 266          
BLAST of BQ623378 vs. ExPASy Swiss-Prot
Match: CB23_SOYBN (Chlorophyll a-b binding protein 3, chloroplastic OS=Glycine max GN=CAB3 PE=3 SV=1)

HSP 1 Score: 147.902 bits (372), Expect = 1.522e-35
Identity = 70/73 (95.89%), Postives = 72/73 (98.63%), Query Frame = 2
Query:   20 AFDPLGLADDPEAFAELKVKEIKNGRLAMFSMFGFFVQAIVTGKGPLENLADHLADPVNNNAWAYATNFVPGK 238
            +FDPLGLADDPEAFAELKVKE+KNGRLAMFSMFGFFVQAIVTGKGPLENLADHLA PVNNNAWAYATNFVPGK
Sbjct:  191 SFDPLGLADDPEAFAELKVKELKNGRLAMFSMFGFFVQAIVTGKGPLENLADHLAGPVNNNAWAYATNFVPGK 263          
BLAST of BQ623378 vs. ExPASy Swiss-Prot
Match: CB21_MAIZE (Chlorophyll a-b binding protein 1, chloroplastic OS=Zea mays GN=CAB1 PE=3 SV=1)

HSP 1 Score: 147.902 bits (372), Expect = 1.522e-35
Identity = 69/72 (95.83%), Postives = 72/72 (100.00%), Query Frame = 2
Query:   20 AFDPLGLADDPEAFAELKVKEIKNGRLAMFSMFGFFVQAIVTGKGPLENLADHLADPVNNNAWAYATNFVPG 235
            +FDPLGLADDPEAFAELKVKE+KNGRLAMFSMFGFFVQAIVTGKGPLENLADH+ADPVNNNAWAYATNFVPG
Sbjct:  190 SFDPLGLADDPEAFAELKVKELKNGRLAMFSMFGFFVQAIVTGKGPLENLADHIADPVNNNAWAYATNFVPG 261          
BLAST of BQ623378 vs. ExPASy Swiss-Prot
Match: CB2F_SOLLC (Chlorophyll a-b binding protein 3B, chloroplastic (Fragments) OS=Solanum lycopersicum GN=CAB3B PE=3 SV=1)

HSP 1 Score: 147.517 bits (371), Expect = 1.988e-35
Identity = 69/73 (94.52%), Postives = 73/73 (100.00%), Query Frame = 2
Query:   20 AFDPLGLADDPEAFAELKVKEIKNGRLAMFSMFGFFVQAIVTGKGPLENLADHLADPVNNNAWAYATNFVPGK 238
            +FDPLGLA+DPEAFAELKVKEIKNGRLAMFSMFGFFVQAIVTGKGPLENLADH+ADPVNNNAWA+ATNFVPGK
Sbjct:  195 SFDPLGLAEDPEAFAELKVKEIKNGRLAMFSMFGFFVQAIVTGKGPLENLADHIADPVNNNAWAFATNFVPGK 267          
BLAST of BQ623378 vs. ExPASy Swiss-Prot
Match: CB2E_SOLLC (Chlorophyll a-b binding protein 3A, chloroplastic (Fragments) OS=Solanum lycopersicum GN=CAB3A PE=3 SV=1)

HSP 1 Score: 147.517 bits (371), Expect = 1.988e-35
Identity = 69/73 (94.52%), Postives = 73/73 (100.00%), Query Frame = 2
Query:   20 AFDPLGLADDPEAFAELKVKEIKNGRLAMFSMFGFFVQAIVTGKGPLENLADHLADPVNNNAWAYATNFVPGK 238
            +FDPLGLA+DPEAFAELKVKEIKNGRLAMFSMFGFFVQAIVTGKGPLENLADH+ADPVNNNAWA+ATNFVPGK
Sbjct:  195 SFDPLGLAEDPEAFAELKVKEIKNGRLAMFSMFGFFVQAIVTGKGPLENLADHIADPVNNNAWAFATNFVPGK 267          
BLAST of BQ623378 vs. ExPASy Swiss-Prot
Match: CB2A_SPIOL (Chlorophyll a-b binding protein, chloroplastic OS=Spinacia oleracea PE=1 SV=1)

HSP 1 Score: 147.517 bits (371), Expect = 1.988e-35
Identity = 70/73 (95.89%), Postives = 72/73 (98.63%), Query Frame = 2
Query:   20 AFDPLGLADDPEAFAELKVKEIKNGRLAMFSMFGFFVQAIVTGKGPLENLADHLADPVNNNAWAYATNFVPGK 238
            +FDPLGLADDPEAFAELKVKEIKNGRLAMFSMFGFFVQAIVTGKGPLENLADHLADPVNNNAW +ATNFVPGK
Sbjct:  195 SFDPLGLADDPEAFAELKVKEIKNGRLAMFSMFGFFVQAIVTGKGPLENLADHLADPVNNNAWNFATNFVPGK 267          
BLAST of BQ623378 vs. ExPASy Swiss-Prot
Match: CB21_SOYBN (Chlorophyll a-b binding protein, chloroplastic (Fragment) OS=Glycine max PE=2 SV=1)

HSP 1 Score: 147.517 bits (371), Expect = 1.988e-35
Identity = 70/73 (95.89%), Postives = 72/73 (98.63%), Query Frame = 2
Query:   20 AFDPLGLADDPEAFAELKVKEIKNGRLAMFSMFGFFVQAIVTGKGPLENLADHLADPVNNNAWAYATNFVPGK 238
            +FDPL LADDPEAFAELKVKEIKNGRLAMFSMFGFFVQAIVTGKGPLENLADHLA+PVNNNAWAYATNFVPGK
Sbjct:  173 SFDPLALADDPEAFAELKVKEIKNGRLAMFSMFGFFVQAIVTGKGPLENLADHLAEPVNNNAWAYATNFVPGK 245          
The following BLAST results are available for this feature:
BLAST of BQ623378 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 72
Match NameE-valueIdentityDescription
CB28_PEA1.165e-3594.52Chlorophyll a-b binding protein 8, chloroplastic O... [more]
CB21_PETSP1.165e-3595.89Chlorophyll a-b binding protein 13, chloroplastic ... [more]
CB29_MAIZE1.522e-3595.83Chlorophyll a-b binding protein M9, chloroplastic ... [more]
CB25_NICPL1.522e-3594.52Chlorophyll a-b binding protein E, chloroplastic O... [more]
CB23_SOYBN1.522e-3595.89Chlorophyll a-b binding protein 3, chloroplastic O... [more]
CB21_MAIZE1.522e-3595.83Chlorophyll a-b binding protein 1, chloroplastic O... [more]
CB2F_SOLLC1.988e-3594.52Chlorophyll a-b binding protein 3B, chloroplastic ... [more]
CB2E_SOLLC1.988e-3594.52Chlorophyll a-b binding protein 3A, chloroplastic ... [more]
CB2A_SPIOL1.988e-3595.89Chlorophyll a-b binding protein, chloroplastic OS=... [more]
CB21_SOYBN1.988e-3595.89Chlorophyll a-b binding protein, chloroplastic (Fr... [more]

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Properties
Property NameValue
Genbank descriptionUSDA-FP_00469 Ridge pineapple sweet orange entire seedling Citrus sinensis cDNA clone USDA-FP_00469 5, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>BQ623378 ID=BQ623378; Name=BQ623378; organism=Citrus sinensis; type=EST; length=349bp
CCATTGTACCCAGGTGGCAGCCTTTGATCCATTGGGTTTGGCTGATGACC
CGGAGGCTTTTGCTGAGCTCAAGGTTAAGGAAATCAAGAATGGAAGGTTG
GCTATGTTCTCCATGTTTGGTTTCTTCGTTCAGGCCATTGTCACCGGCAA
GGGACCGTTAGAGAACTTGGCCGACCACTTGGCTGACCCTGTCAATAACA
ATGCCTGGGCCTACGCCACCAACTTTGTCCCCGGAAAGTGAGCTTCGGTT
GATAAGAGTTTTTCTCTTTTCGGTTTCTTGGATATCATGTAAATCTGTTG
TGAGCTCATGGAAGCTTTAATTTGAGTTGTGATTATTTATAAAATGCTT
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