BQ623378 | Citrus Genome Database

Overview


Name	BQ623378
Unique Name	BQ623378
Type	EST
Organism	Citrus sinensis (Sweet orange)
Sequence length	349

Libraries


Library Name	Type
Ridge pineapple sweet orange entire seedling	cdna_library

Analyses

This EST is derived from or has results from the following analyses


Analysis Name	Date Performed
BLAST: Citrus ESTs to Prunus persica proteins V1	2010-05-10
BLAST: Citrus ESTs to Populus V2 proteins	2010-05-10
BLAST: Citrus ESTs to TAIR9	2010-05-10
BLAST: Citrus ESTs to SwissProt	2010-05-10

Alignments

Feature Name	Type	Location	Analysis
Csv1_Contig9540	contig	Csv1_Contig9540:653..1000.	BLAST: Citrus Unigene V1 Contigs to Prunus persica proteins V1

Homology

[Close]

BLAST of BQ623378 vs. ExPASy Swiss-Prot
Match: CB21_GOSHI (Chlorophyll a-b binding protein 151, chloroplastic OS=Gossypium hirsutum GN=CAB-151 PE=2 SV=2)

HSP 1 Score: 145.206 bits (365), Expect = 9.866e-35
Identity = 69/73 (94.52%), Postives = 71/73 (97.26%), Query Frame = 2

Query:   20 AFDPLGLADDPEAFAELKVKEIKNGRLAMFSMFGFFVQAIVTGKGPLENLADHLADPVNNNAWAYATNFVPGK 238
            AFDPLGLADDP+AFAELKVKEIKNGRLAMFSMFGFFVQAIVTGKGP+ENL DHLADPV NNAWAYATNFVPGK
Sbjct:  193 AFDPLGLADDPDAFAELKVKEIKNGRLAMFSMFGFFVQAIVTGKGPIENLFDHLADPVANNAWAYATNFVPGK 265

[Close]

BLAST of BQ623378 vs. ExPASy Swiss-Prot
Match: CB24_SOLLC (Chlorophyll a-b binding protein 4, chloroplastic OS=Solanum lycopersicum GN=CAB4 PE=2 SV=1)

HSP 1 Score: 144.436 bits (363), Expect = 1.683e-34
Identity = 68/73 (93.15%), Postives = 71/73 (97.26%), Query Frame = 2

Query:   20 AFDPLGLADDPEAFAELKVKEIKNGRLAMFSMFGFFVQAIVTGKGPLENLADHLADPVNNNAWAYATNFVPGK 238
            AFDPLGLADDPEAFAELKVKEIKNGRLAMFSMFGFFVQAIVTGKGP+ENL+DH+ DPV NNAWAYATNFVPGK
Sbjct:  193 AFDPLGLADDPEAFAELKVKEIKNGRLAMFSMFGFFVQAIVTGKGPIENLSDHINDPVANNAWAYATNFVPGK 265

[Close]

BLAST of BQ623378 vs. ExPASy Swiss-Prot
Match: CB26_PETSP (Chlorophyll a-b binding protein 37, chloroplastic OS=Petunia sp. GN=CAB37 PE=3 SV=1)

HSP 1 Score: 143.665 bits (361), Expect = 2.871e-34
Identity = 68/73 (93.15%), Postives = 71/73 (97.26%), Query Frame = 2

Query:   20 AFDPLGLADDPEAFAELKVKEIKNGRLAMFSMFGFFVQAIVTGKGPLENLADHLADPVNNNAWAYATNFVPGK 238
            AFDPLGLADDPEAFAELKVKEIKNGRLAMFSMFGFFVQAIVTGKGP+ENL DH+ADPV NNAWA+ATNFVPGK
Sbjct:  193 AFDPLGLADDPEAFAELKVKEIKNGRLAMFSMFGFFVQAIVTGKGPIENLYDHVADPVANNAWAFATNFVPGK 265

[Close]

BLAST of BQ623378 vs. ExPASy Swiss-Prot
Match: CB22_MAIZE (Chlorophyll a-b binding protein, chloroplastic OS=Zea mays PE=2 SV=1)

HSP 1 Score: 143.665 bits (361), Expect = 2.871e-34
Identity = 67/73 (91.78%), Postives = 70/73 (95.89%), Query Frame = 2

Query:   20 AFDPLGLADDPEAFAELKVKEIKNGRLAMFSMFGFFVQAIVTGKGPLENLADHLADPVNNNAWAYATNFVPGK 238
            +FDPLGLADDPEAF ELKVKE+K GRLAM SMFGFFVQAIVTGKGPLENLADH+ADPVNNNAWAYATNFVPGK
Sbjct:  193 SFDPLGLADDPEAFGELKVKELKKGRLAMLSMFGFFVQAIVTGKGPLENLADHIADPVNNNAWAYATNFVPGK 265

[Close]

BLAST of BQ623378 vs. ExPASy Swiss-Prot
Match: CB21_PINTH (Chlorophyll a-b binding protein type I, chloroplastic OS=Pinus thunbergii PE=2 SV=1)

HSP 1 Score: 143.28 bits (360), Expect = 3.749e-34
Identity = 69/73 (94.52%), Postives = 70/73 (95.89%), Query Frame = 2

Query:   20 AFDPLGLADDPEAFAELKVKEIKNGRLAMFSMFGFFVQAIVTGKGPLENLADHLADPVNNNAWAYATNFVPGK 238
            AFDPLGLADDPEA AELKVKEIKNGRLAMFSMFGFFVQAIVTGKGP+ENL DHLADPV NNAWAYATNFVPGK
Sbjct:  194 AFDPLGLADDPEACAELKVKEIKNGRLAMFSMFGFFVQAIVTGKGPIENLYDHLADPVANNAWAYATNFVPGK 266

[Close]

BLAST of BQ623378 vs. ExPASy Swiss-Prot
Match: CB22_PINSY (Chlorophyll a-b binding protein type 2 member 2 (Fragment) OS=Pinus sylvestris PE=2 SV=1)

HSP 1 Score: 142.895 bits (359), Expect = 4.896e-34
Identity = 69/73 (94.52%), Postives = 70/73 (95.89%), Query Frame = 2

Query:   20 AFDPLGLADDPEAFAELKVKEIKNGRLAMFSMFGFFVQAIVTGKGPLENLADHLADPVNNNAWAYATNFVPGK 238
            AFDPLGLADDPEA AELKVKEIKNGRLAMFSMFGFFVQAIVTGKGP+ENL DHLADPV NNAWAYATNFVPGK
Sbjct:   78 AFDPLGLADDPEAKAELKVKEIKNGRLAMFSMFGFFVQAIVTGKGPIENLYDHLADPVANNAWAYATNFVPGK 150

[Close]

BLAST of BQ623378 vs. ExPASy Swiss-Prot
Match: CB23_APIGR (Chlorophyll a-b binding protein, chloroplastic OS=Apium graveolens GN=LHC0 PE=1 SV=1)

HSP 1 Score: 142.51 bits (358), Expect = 6.395e-34
Identity = 67/73 (91.78%), Postives = 71/73 (97.26%), Query Frame = 2

Query:   20 AFDPLGLADDPEAFAELKVKEIKNGRLAMFSMFGFFVQAIVTGKGPLENLADHLADPVNNNAWAYATNFVPGK 238
            +FDPLGLA+DPE  AELKVKE+KNGRLAMFSMFGFFVQAIVTGKGPLENLADHLADPVNNNAWA+ATNFVPGK
Sbjct:  192 SFDPLGLAEDPERSAELKVKELKNGRLAMFSMFGFFVQAIVTGKGPLENLADHLADPVNNNAWAFATNFVPGK 264

[Close]

BLAST of BQ623378 vs. ExPASy Swiss-Prot
Match: CB23_POLMU (Chlorophyll a-b binding protein type 1 member F3, chloroplastic OS=Polystichum munitum GN=CABF3 PE=3 SV=1)

HSP 1 Score: 142.124 bits (357), Expect = 8.352e-34
Identity = 66/73 (90.41%), Postives = 70/73 (95.89%), Query Frame = 2

Query:   20 AFDPLGLADDPEAFAELKVKEIKNGRLAMFSMFGFFVQAIVTGKGPLENLADHLADPVNNNAWAYATNFVPGK 238
            +FDPLGLADDPEAFAELKVKE+KNGRLAMFSMFGFFVQAIVTGKGP+ENL+DHLADP  NNAWAYATNF PGK
Sbjct:  193 SFDPLGLADDPEAFAELKVKELKNGRLAMFSMFGFFVQAIVTGKGPIENLSDHLADPAVNNAWAYATNFTPGK 265

[Close]

BLAST of BQ623378 vs. ExPASy Swiss-Prot
Match: CB21_PEA (Chlorophyll a-b binding protein AB96 (Fragment) OS=Pisum sativum GN=AB96 PE=1 SV=1)

HSP 1 Score: 142.124 bits (357), Expect = 8.352e-34
Identity = 67/73 (91.78%), Postives = 71/73 (97.26%), Query Frame = 2

Query:   20 AFDPLGLADDPEAFAELKVKEIKNGRLAMFSMFGFFVQAIVTGKGPLENLADHLADPVNNNAWAYATNFVPGK 238
            +FDPLGLA+ PEAFAELKVKE+KNGRLAMFSMFGFFV AIVTGKGPLENLADHLADPVNNNAW+YATNFVPGK
Sbjct:  156 SFDPLGLAEVPEAFAELKVKELKNGRLAMFSMFGFFVPAIVTGKGPLENLADHLADPVNNNAWSYATNFVPGK 228

[Close]

BLAST of BQ623378 vs. ExPASy Swiss-Prot
Match: CB23_ORYSJ (Chlorophyll a-b binding protein, chloroplastic OS=Oryza sativa subsp. japonica GN=RCABP89 PE=2 SV=1)

HSP 1 Score: 141.739 bits (356), Expect = 1.091e-33
Identity = 66/73 (90.41%), Postives = 70/73 (95.89%), Query Frame = 2

Query:   20 AFDPLGLADDPEAFAELKVKEIKNGRLAMFSMFGFFVQAIVTGKGPLENLADHLADPVNNNAWAYATNFVPGK 238
            AFDPLGLADDP+ FAELKVKE+KNGRLAMFSMFGFFVQAIVTGKGP+ENL DH+ADPV NNAWAYATNFVPGK
Sbjct:  191 AFDPLGLADDPDTFAELKVKELKNGRLAMFSMFGFFVQAIVTGKGPIENLFDHVADPVANNAWAYATNFVPGK 263

The following BLAST results are available for this feature:

BLAST of BQ623378 vs. ExPASy Swiss-Prot

BLAST of BQ623378 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 72


Match Name	E-value	Identity	Description
CB21_GOSHI	9.866e-35	94.52	Chlorophyll a-b binding protein 151, chloroplastic...	[more]
CB24_SOLLC	1.683e-34	93.15	Chlorophyll a-b binding protein 4, chloroplastic O...	[more]
CB26_PETSP	2.871e-34	93.15	Chlorophyll a-b binding protein 37, chloroplastic ...	[more]
CB22_MAIZE	2.871e-34	91.78	Chlorophyll a-b binding protein, chloroplastic OS=...	[more]
CB21_PINTH	3.749e-34	94.52	Chlorophyll a-b binding protein type I, chloroplas...	[more]
CB22_PINSY	4.896e-34	94.52	Chlorophyll a-b binding protein type 2 member 2 (F...	[more]
CB23_APIGR	6.395e-34	91.78	Chlorophyll a-b binding protein, chloroplastic OS=...	[more]
CB23_POLMU	8.352e-34	90.41	Chlorophyll a-b binding protein type 1 member F3, ...	[more]
CB21_PEA	8.352e-34	91.78	Chlorophyll a-b binding protein AB96 (Fragment) OS...	[more]
CB23_ORYSJ	1.091e-33	90.41	Chlorophyll a-b binding protein, chloroplastic OS=...	[more]

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Properties


Property Name	Value
Genbank description	USDA-FP_00469 Ridge pineapple sweet orange entire seedling Citrus sinensis cDNA clone USDA-FP_00469 5, mRNA sequence.

Sequences

The following sequences are available for this feature:

EST sequence

EST sequence

>BQ623378 ID=BQ623378; Name=BQ623378; organism=Citrus sinensis; type=EST; length=349bp
CCATTGTACCCAGGTGGCAGCCTTTGATCCATTGGGTTTGGCTGATGACC
CGGAGGCTTTTGCTGAGCTCAAGGTTAAGGAAATCAAGAATGGAAGGTTG
GCTATGTTCTCCATGTTTGGTTTCTTCGTTCAGGCCATTGTCACCGGCAA
GGGACCGTTAGAGAACTTGGCCGACCACTTGGCTGACCCTGTCAATAACA
ATGCCTGGGCCTACGCCACCAACTTTGTCCCCGGAAAGTGAGCTTCGGTT
GATAAGAGTTTTTCTCTTTTCGGTTTCTTGGATATCATGTAAATCTGTTG
TGAGCTCATGGAAGCTTTAATTTGAGTTGTGATTATTTATAAAATGCTT