BQ623378

Overview
NameBQ623378
Unique NameBQ623378
TypeEST
OrganismCitrus sinensis (Sweet orange)
Sequence length349
Libraries
Library NameType
Ridge pineapple sweet orange entire seedlingcdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Alignments
Feature NameTypeLocationAnalysis
Csv1_Contig9540 contig Csv1_Contig9540:653..1000. BLAST: Citrus Unigene V1 Contigs to Prunus persica proteins V1
Homology
[Close]
BLAST of BQ623378 vs. ExPASy Swiss-Prot
Match: CB4A_ARATH (Chlorophyll a-b binding protein CP29.1, chloroplastic OS=Arabidopsis thaliana GN=LHCB4.1 PE=1 SV=1)

HSP 1 Score: 75.485 bits (184), Expect = 9.600e-14
Identity = 36/58 (62.07%), Postives = 44/58 (75.86%), Query Frame = 2 
Query:   23 FDPLGLADDPEAFAELKVKEIKNGRLAMFSMFGFFVQAIVTGKGPLENLADHLADPVN 196
            FDPLGLA DPE  A+L++ EIK+ RLAM +  GF VQA  TGKGPL N A HL+DP++
Sbjct:  223 FDPLGLAADPEKTAQLQLAEIKHARLAMVAFLGFAVQAAATGKGPLNNWATHLSDPLH 280
[Close]
BLAST of BQ623378 vs. ExPASy Swiss-Prot
Match: CB4B_ARATH (Chlorophyll a-b binding protein CP29.2, chloroplastic OS=Arabidopsis thaliana GN=LHCB4.2 PE=1 SV=1)

HSP 1 Score: 72.7886 bits (177), Expect = 6.223e-13
Identity = 35/58 (60.34%), Postives = 42/58 (72.41%), Query Frame = 2 
Query:   23 FDPLGLADDPEAFAELKVKEIKNGRLAMFSMFGFFVQAIVTGKGPLENLADHLADPVN 196
            FDPLGLA DP   A+L++ EIK+ RLAM    GF VQA  TGKGPL N A HL+DP++
Sbjct:  220 FDPLGLASDPVKKAQLQLAEIKHARLAMVGFLGFAVQAAATGKGPLNNWATHLSDPLH 277
The following BLAST results are available for this feature:
BLAST of BQ623378 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 72
Match NameE-valueIdentityDescription
CB4A_ARATH9.600e-1462.07Chlorophyll a-b binding protein CP29.1, chloroplas... [more]
CB4B_ARATH6.223e-1360.34Chlorophyll a-b binding protein CP29.2, chloroplas... [more]

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Properties
Property NameValue
Genbank descriptionUSDA-FP_00469 Ridge pineapple sweet orange entire seedling Citrus sinensis cDNA clone USDA-FP_00469 5, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>BQ623378 ID=BQ623378; Name=BQ623378; organism=Citrus sinensis; type=EST; length=349bp
CCATTGTACCCAGGTGGCAGCCTTTGATCCATTGGGTTTGGCTGATGACC
CGGAGGCTTTTGCTGAGCTCAAGGTTAAGGAAATCAAGAATGGAAGGTTG
GCTATGTTCTCCATGTTTGGTTTCTTCGTTCAGGCCATTGTCACCGGCAA
GGGACCGTTAGAGAACTTGGCCGACCACTTGGCTGACCCTGTCAATAACA
ATGCCTGGGCCTACGCCACCAACTTTGTCCCCGGAAAGTGAGCTTCGGTT
GATAAGAGTTTTTCTCTTTTCGGTTTCTTGGATATCATGTAAATCTGTTG
TGAGCTCATGGAAGCTTTAATTTGAGTTGTGATTATTTATAAAATGCTT
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