BQ623380

Overview
NameBQ623380
Unique NameBQ623380
TypeEST
OrganismCitrus sinensis (Sweet orange)
Sequence length375
Libraries
Library NameType
Ridge pineapple sweet orange entire seedlingcdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Alignments
Feature NameTypeLocationAnalysis
Csv1_Contig10040 contig Csv1_Contig10040:556..930. BLAST: Citrus Unigene V1 Contigs to Prunus persica proteins V1
Homology
BLAST of BQ623380 vs. ExPASy Swiss-Prot
Match: CB22_TOBAC (Chlorophyll a-b binding protein 21, chloroplastic OS=Nicotiana tabacum GN=CAB21 PE=2 SV=1)

HSP 1 Score: 67.781 bits (164), Expect = 1.942e-11
Identity = 34/55 (61.82%), Postives = 41/55 (74.55%), Query Frame = 3
Query:    6 SKDPQKFEEYKVKEIKNGRLALLAFVGFCVQQSAYPGTGPLENLATHLADPWHNN 170
            ++DP+ F E KVKEIKNGRLA+ +  GF V Q+   G GPLENLA HLADP +NN
Sbjct:  200 AEDPEAFAELKVKEIKNGRLAMFSMFGFFV-QAIVTGKGPLENLADHLADPVNNN 253          
BLAST of BQ623380 vs. ExPASy Swiss-Prot
Match: CB21_TOBAC (Chlorophyll a-b binding protein 16, chloroplastic OS=Nicotiana tabacum GN=CAB16 PE=2 SV=1)

HSP 1 Score: 67.781 bits (164), Expect = 1.942e-11
Identity = 34/55 (61.82%), Postives = 41/55 (74.55%), Query Frame = 3
Query:    6 SKDPQKFEEYKVKEIKNGRLALLAFVGFCVQQSAYPGTGPLENLATHLADPWHNN 170
            ++DP+ F E KVKEIKNGRLA+ +  GF V Q+   G GPLENLA HLADP +NN
Sbjct:  201 AEDPEAFAELKVKEIKNGRLAMFSMFGFFV-QAIVTGKGPLENLADHLADPVNNN 254          
BLAST of BQ623380 vs. ExPASy Swiss-Prot
Match: CB2G_SOLLC (Chlorophyll a-b binding protein 3C, chloroplastic OS=Solanum lycopersicum GN=CAB3C PE=3 SV=1)

HSP 1 Score: 67.0106 bits (162), Expect = 3.313e-11
Identity = 34/53 (64.15%), Postives = 39/53 (73.58%), Query Frame = 3
Query:   12 DPQKFEEYKVKEIKNGRLALLAFVGFCVQQSAYPGTGPLENLATHLADPWHNN 170
            DP+ F E KVKEIKNGRLA+ +  GF V Q+   G GPLENLA HLADP +NN
Sbjct:  204 DPEAFAELKVKEIKNGRLAMFSMFGFFV-QAIVTGKGPLENLADHLADPVNNN 255          
BLAST of BQ623380 vs. ExPASy Swiss-Prot
Match: CB2F_SOLLC (Chlorophyll a-b binding protein 3B, chloroplastic (Fragments) OS=Solanum lycopersicum GN=CAB3B PE=3 SV=1)

HSP 1 Score: 67.0106 bits (162), Expect = 3.313e-11
Identity = 33/55 (60.00%), Postives = 41/55 (74.55%), Query Frame = 3
Query:    6 SKDPQKFEEYKVKEIKNGRLALLAFVGFCVQQSAYPGTGPLENLATHLADPWHNN 170
            ++DP+ F E KVKEIKNGRLA+ +  GF V Q+   G GPLENLA H+ADP +NN
Sbjct:  202 AEDPEAFAELKVKEIKNGRLAMFSMFGFFV-QAIVTGKGPLENLADHIADPVNNN 255          
BLAST of BQ623380 vs. ExPASy Swiss-Prot
Match: CB2E_SOLLC (Chlorophyll a-b binding protein 3A, chloroplastic (Fragments) OS=Solanum lycopersicum GN=CAB3A PE=3 SV=1)

HSP 1 Score: 67.0106 bits (162), Expect = 3.313e-11
Identity = 33/55 (60.00%), Postives = 41/55 (74.55%), Query Frame = 3
Query:    6 SKDPQKFEEYKVKEIKNGRLALLAFVGFCVQQSAYPGTGPLENLATHLADPWHNN 170
            ++DP+ F E KVKEIKNGRLA+ +  GF V Q+   G GPLENLA H+ADP +NN
Sbjct:  202 AEDPEAFAELKVKEIKNGRLAMFSMFGFFV-QAIVTGKGPLENLADHIADPVNNN 255          
BLAST of BQ623380 vs. ExPASy Swiss-Prot
Match: CB2B_PINSY (Chlorophyll a-b binding protein type 2 member 1B, chloroplastic OS=Pinus sylvestris PE=2 SV=1)

HSP 1 Score: 67.0106 bits (162), Expect = 3.313e-11
Identity = 33/55 (60.00%), Postives = 41/55 (74.55%), Query Frame = 3
Query:    6 SKDPQKFEEYKVKEIKNGRLALLAFVGFCVQQSAYPGTGPLENLATHLADPWHNN 170
            ++DP+ F E KVKEIKNGRLA+ +  GF V Q+   G GP+ENLA HLADP +NN
Sbjct:  209 AEDPEAFAELKVKEIKNGRLAMFSMFGFFV-QAIVTGKGPIENLADHLADPVNNN 262          
BLAST of BQ623380 vs. ExPASy Swiss-Prot
Match: CB2A_SPIOL (Chlorophyll a-b binding protein, chloroplastic OS=Spinacia oleracea PE=1 SV=1)

HSP 1 Score: 67.0106 bits (162), Expect = 3.313e-11
Identity = 34/53 (64.15%), Postives = 39/53 (73.58%), Query Frame = 3
Query:   12 DPQKFEEYKVKEIKNGRLALLAFVGFCVQQSAYPGTGPLENLATHLADPWHNN 170
            DP+ F E KVKEIKNGRLA+ +  GF V Q+   G GPLENLA HLADP +NN
Sbjct:  204 DPEAFAELKVKEIKNGRLAMFSMFGFFV-QAIVTGKGPLENLADHLADPVNNN 255          
BLAST of BQ623380 vs. ExPASy Swiss-Prot
Match: CB25_PETSP (Chlorophyll a-b binding protein 91R, chloroplastic OS=Petunia sp. GN=CAB91R PE=3 SV=1)

HSP 1 Score: 67.0106 bits (162), Expect = 3.313e-11
Identity = 34/53 (64.15%), Postives = 39/53 (73.58%), Query Frame = 3
Query:   12 DPQKFEEYKVKEIKNGRLALLAFVGFCVQQSAYPGTGPLENLATHLADPWHNN 170
            DP+ F E KVKEIKNGRLA+ +  GF V Q+   G GPLENLA HLADP +NN
Sbjct:  204 DPEAFAELKVKEIKNGRLAMFSMFGFFV-QAIVTGKGPLENLADHLADPVNNN 255          
BLAST of BQ623380 vs. ExPASy Swiss-Prot
Match: CB24_PETSP (Chlorophyll a-b binding protein 25, chloroplastic OS=Petunia sp. GN=CAB25 PE=3 SV=1)

HSP 1 Score: 67.0106 bits (162), Expect = 3.313e-11
Identity = 34/53 (64.15%), Postives = 39/53 (73.58%), Query Frame = 3
Query:   12 DPQKFEEYKVKEIKNGRLALLAFVGFCVQQSAYPGTGPLENLATHLADPWHNN 170
            DP+ F E KVKEIKNGRLA+ +  GF V Q+   G GPLENLA HLADP +NN
Sbjct:  203 DPEAFAELKVKEIKNGRLAMFSMFGFFV-QAIVTGKGPLENLADHLADPVNNN 254          
BLAST of BQ623380 vs. ExPASy Swiss-Prot
Match: CB22_ORYSJ (Chlorophyll a-b binding protein 2, chloroplastic OS=Oryza sativa subsp. japonica GN=CAB2R PE=2 SV=2)

HSP 1 Score: 67.0106 bits (162), Expect = 3.313e-11
Identity = 34/53 (64.15%), Postives = 39/53 (73.58%), Query Frame = 3
Query:   12 DPQKFEEYKVKEIKNGRLALLAFVGFCVQQSAYPGTGPLENLATHLADPWHNN 170
            DP+ F E KVKEIKNGRLA+ +  GF V Q+   G GPLENLA HLADP +NN
Sbjct:  198 DPEAFAELKVKEIKNGRLAMFSMFGFFV-QAIVTGKGPLENLADHLADPVNNN 249          
The following BLAST results are available for this feature:
BLAST of BQ623380 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 34
Match NameE-valueIdentityDescription
CB22_TOBAC1.942e-1161.82Chlorophyll a-b binding protein 21, chloroplastic ... [more]
CB21_TOBAC1.942e-1161.82Chlorophyll a-b binding protein 16, chloroplastic ... [more]
CB2G_SOLLC3.313e-1164.15Chlorophyll a-b binding protein 3C, chloroplastic ... [more]
CB2F_SOLLC3.313e-1160.00Chlorophyll a-b binding protein 3B, chloroplastic ... [more]
CB2E_SOLLC3.313e-1160.00Chlorophyll a-b binding protein 3A, chloroplastic ... [more]
CB2B_PINSY3.313e-1160.00Chlorophyll a-b binding protein type 2 member 1B, ... [more]
CB2A_SPIOL3.313e-1164.15Chlorophyll a-b binding protein, chloroplastic OS=... [more]
CB25_PETSP3.313e-1164.15Chlorophyll a-b binding protein 91R, chloroplastic... [more]
CB24_PETSP3.313e-1164.15Chlorophyll a-b binding protein 25, chloroplastic ... [more]
CB22_ORYSJ3.313e-1164.15Chlorophyll a-b binding protein 2, chloroplastic O... [more]

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Properties
Property NameValue
Genbank descriptionUSDA-FP_00471 Ridge pineapple sweet orange entire seedling Citrus sinensis cDNA clone USDA-FP_00471 5, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>BQ623380 ID=BQ623380; Name=BQ623380; organism=Citrus sinensis; type=EST; length=375bp
GCTTCTCCAAGGACCCCCAGAAGTTCGAGGAATACAAAGTCAAGGAGATA
AAAAATGGGCGTTTGGCATTGCTGGCATTTGTGGGTTTCTGCGTGCAACA
ATCAGCATATCCGGGCACAGGACCATTGGAGAACTTGGCAACTCACTTGG
CTGATCCATGGCACAACAACATTGGGGACGTTATTATCCCCAGAGGGATT
GTGCCTTGAAGAATTGCATTGTTAAATTATCCAATCCACTGTAAAATTCC
CTGTTAAAAGAGCCTTTAATGAAACAGAATTCGTATCTTTCTGACTGTAA
GATTAGAAAGTAATTGTCCTCCAATGACGTTCATGCTAGAATCTAATACT
ATTGTGATTGCCATAATCAAGAGCT
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