BQ623380

Overview
NameBQ623380
Unique NameBQ623380
TypeEST
OrganismCitrus sinensis (Sweet orange)
Sequence length375
Libraries
Library NameType
Ridge pineapple sweet orange entire seedlingcdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Alignments
Feature NameTypeLocationAnalysis
Csv1_Contig10040 contig Csv1_Contig10040:556..930. BLAST: Citrus Unigene V1 Contigs to Prunus persica proteins V1
Homology
BLAST of BQ623380 vs. ExPASy Swiss-Prot
Match: CB21_SINAL (Chlorophyll a-b binding protein 1, chloroplastic OS=Sinapis alba GN=CAB1 PE=3 SV=1)

HSP 1 Score: 67.0106 bits (162), Expect = 3.313e-11
Identity = 34/53 (64.15%), Postives = 39/53 (73.58%), Query Frame = 3
Query:   12 DPQKFEEYKVKEIKNGRLALLAFVGFCVQQSAYPGTGPLENLATHLADPWHNN 170
            DP+ F E KVKEIKNGRLA+ +  GF V Q+   G GPLENLA HLADP +NN
Sbjct:  203 DPEAFAELKVKEIKNGRLAMFSMFGFFV-QAIVTGKGPLENLADHLADPVNNN 254          
BLAST of BQ623380 vs. ExPASy Swiss-Prot
Match: CB21_RAPSA (Chlorophyll a-b binding of LHCII type 1 protein (Fragment) OS=Raphanus sativus PE=2 SV=1)

HSP 1 Score: 67.0106 bits (162), Expect = 3.313e-11
Identity = 34/53 (64.15%), Postives = 39/53 (73.58%), Query Frame = 3
Query:   12 DPQKFEEYKVKEIKNGRLALLAFVGFCVQQSAYPGTGPLENLATHLADPWHNN 170
            DP+ F E KVKEIKNGRLA+ +  GF V Q+   G GPLENLA HLADP +NN
Sbjct:   61 DPEAFAELKVKEIKNGRLAMFSMFGFFV-QAIVTGKGPLENLADHLADPVNNN 112          
BLAST of BQ623380 vs. ExPASy Swiss-Prot
Match: CB21_ORYSJ (Chlorophyll a-b binding protein 1, chloroplastic OS=Oryza sativa subsp. japonica GN=CAB1R PE=2 SV=2)

HSP 1 Score: 67.0106 bits (162), Expect = 3.313e-11
Identity = 34/53 (64.15%), Postives = 39/53 (73.58%), Query Frame = 3
Query:   12 DPQKFEEYKVKEIKNGRLALLAFVGFCVQQSAYPGTGPLENLATHLADPWHNN 170
            DP+ F E KVKEIKNGRLA+ +  GF V Q+   G GPLENLA HLADP +NN
Sbjct:  202 DPEAFAELKVKEIKNGRLAMFSMFGFFV-QAIVTGKGPLENLADHLADPVNNN 253          
BLAST of BQ623380 vs. ExPASy Swiss-Prot
Match: CB22_PEA (Chlorophyll a-b binding protein AB80, chloroplastic OS=Pisum sativum GN=AB80 PE=1 SV=1)

HSP 1 Score: 66.2402 bits (160), Expect = 5.651e-11
Identity = 33/53 (62.26%), Postives = 39/53 (73.58%), Query Frame = 3
Query:   12 DPQKFEEYKVKEIKNGRLALLAFVGFCVQQSAYPGTGPLENLATHLADPWHNN 170
            DP+ F E KVKE+KNGRLA+ +  GF V Q+   G GPLENLA HLADP +NN
Sbjct:  206 DPEAFAELKVKELKNGRLAMFSMFGFFV-QAIVTGKGPLENLADHLADPVNNN 257          
BLAST of BQ623380 vs. ExPASy Swiss-Prot
Match: CB22_CUCSA (Chlorophyll a-b binding protein of LHCII type 1 (Fragment) OS=Cucumis sativus PE=2 SV=1)

HSP 1 Score: 66.2402 bits (160), Expect = 5.651e-11
Identity = 33/53 (62.26%), Postives = 39/53 (73.58%), Query Frame = 3
Query:   12 DPQKFEEYKVKEIKNGRLALLAFVGFCVQQSAYPGTGPLENLATHLADPWHNN 170
            DP+ F E KVKE+KNGRLA+ +  GF V Q+   G GPLENLA HLADP +NN
Sbjct:  143 DPEAFAELKVKELKNGRLAMFSMFGFFV-QAIVTGKGPLENLADHLADPVNNN 194          
BLAST of BQ623380 vs. ExPASy Swiss-Prot
Match: CB21_CUCSA (Chlorophyll a-b binding protein of LHCII type I, chloroplastic (Fragment) OS=Cucumis sativus PE=2 SV=1)

HSP 1 Score: 66.2402 bits (160), Expect = 5.651e-11
Identity = 33/53 (62.26%), Postives = 39/53 (73.58%), Query Frame = 3
Query:   12 DPQKFEEYKVKEIKNGRLALLAFVGFCVQQSAYPGTGPLENLATHLADPWHNN 170
            DP+ F E KVKE+KNGRLA+ +  GF V Q+   G GPLENLA HLADP +NN
Sbjct:  192 DPEAFAELKVKELKNGRLAMFSMFGFFV-QAIVTGKGPLENLADHLADPVNNN 243          
BLAST of BQ623380 vs. ExPASy Swiss-Prot
Match: CB48_MAIZE (Chlorophyll a-b binding protein 48, chloroplastic OS=Zea mays GN=CAB48 PE=3 SV=1)

HSP 1 Score: 65.855 bits (159), Expect = 7.380e-11
Identity = 32/53 (60.38%), Postives = 39/53 (73.58%), Query Frame = 3
Query:   12 DPQKFEEYKVKEIKNGRLALLAFVGFCVQQSAYPGTGPLENLATHLADPWHNN 170
            DP++F E KVKEIKNGRLA+ +  GF V Q+   G GP+ENLA HL DP +NN
Sbjct:  201 DPERFAELKVKEIKNGRLAMFSMFGFFV-QAIVTGKGPIENLADHLTDPVNNN 252          
BLAST of BQ623380 vs. ExPASy Swiss-Prot
Match: CB25_TOBAC (Chlorophyll a-b binding protein 50, chloroplastic OS=Nicotiana tabacum GN=CAB50 PE=2 SV=1)

HSP 1 Score: 65.855 bits (159), Expect = 7.380e-11
Identity = 33/55 (60.00%), Postives = 40/55 (72.73%), Query Frame = 3
Query:    6 SKDPQKFEEYKVKEIKNGRLALLAFVGFCVQQSAYPGTGPLENLATHLADPWHNN 170
            ++DP+ F E KVK IKNGRLA+ +  GF V Q+   G GPLENLA HLADP +NN
Sbjct:  202 AEDPEAFAELKVKHIKNGRLAMFSMFGFFV-QAIVTGKGPLENLADHLADPVNNN 255          
BLAST of BQ623380 vs. ExPASy Swiss-Prot
Match: CB2A_PINSY (Chlorophyll a-b binding protein type 2 member 1A, chloroplastic OS=Pinus sylvestris PE=2 SV=1)

HSP 1 Score: 65.4698 bits (158), Expect = 9.639e-11
Identity = 33/53 (62.26%), Postives = 38/53 (71.70%), Query Frame = 3
Query:   12 DPQKFEEYKVKEIKNGRLALLAFVGFCVQQSAYPGTGPLENLATHLADPWHNN 170
            DP  F E KVKEIKNGRLA+ +  GF V Q+   G GP+ENLA HLADP +NN
Sbjct:  215 DPDAFAELKVKEIKNGRLAMFSMFGFFV-QAIVTGKGPIENLADHLADPVNNN 266          
BLAST of BQ623380 vs. ExPASy Swiss-Prot
Match: CB22_ARATH (Chlorophyll a-b binding protein 2, chloroplastic OS=Arabidopsis thaliana GN=CAB2A PE=1 SV=1)

HSP 1 Score: 65.4698 bits (158), Expect = 9.639e-11
Identity = 32/53 (60.38%), Postives = 39/53 (73.58%), Query Frame = 3
Query:   12 DPQKFEEYKVKEIKNGRLALLAFVGFCVQQSAYPGTGPLENLATHLADPWHNN 170
            DP+ F E KVKE+KNGRLA+ +  GF V Q+   G GP+ENLA HLADP +NN
Sbjct:  204 DPEAFAELKVKELKNGRLAMFSMFGFFV-QAIVTGKGPIENLADHLADPVNNN 255          
The following BLAST results are available for this feature:
BLAST of BQ623380 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 34
Match NameE-valueIdentityDescription
CB21_SINAL3.313e-1164.15Chlorophyll a-b binding protein 1, chloroplastic O... [more]
CB21_RAPSA3.313e-1164.15Chlorophyll a-b binding of LHCII type 1 protein (F... [more]
CB21_ORYSJ3.313e-1164.15Chlorophyll a-b binding protein 1, chloroplastic O... [more]
CB22_PEA5.651e-1162.26Chlorophyll a-b binding protein AB80, chloroplasti... [more]
CB22_CUCSA5.651e-1162.26Chlorophyll a-b binding protein of LHCII type 1 (F... [more]
CB21_CUCSA5.651e-1162.26Chlorophyll a-b binding protein of LHCII type I, c... [more]
CB48_MAIZE7.380e-1160.38Chlorophyll a-b binding protein 48, chloroplastic ... [more]
CB25_TOBAC7.380e-1160.00Chlorophyll a-b binding protein 50, chloroplastic ... [more]
CB2A_PINSY9.639e-1162.26Chlorophyll a-b binding protein type 2 member 1A, ... [more]
CB22_ARATH9.639e-1160.38Chlorophyll a-b binding protein 2, chloroplastic O... [more]

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Properties
Property NameValue
Genbank descriptionUSDA-FP_00471 Ridge pineapple sweet orange entire seedling Citrus sinensis cDNA clone USDA-FP_00471 5, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>BQ623380 ID=BQ623380; Name=BQ623380; organism=Citrus sinensis; type=EST; length=375bp
GCTTCTCCAAGGACCCCCAGAAGTTCGAGGAATACAAAGTCAAGGAGATA
AAAAATGGGCGTTTGGCATTGCTGGCATTTGTGGGTTTCTGCGTGCAACA
ATCAGCATATCCGGGCACAGGACCATTGGAGAACTTGGCAACTCACTTGG
CTGATCCATGGCACAACAACATTGGGGACGTTATTATCCCCAGAGGGATT
GTGCCTTGAAGAATTGCATTGTTAAATTATCCAATCCACTGTAAAATTCC
CTGTTAAAAGAGCCTTTAATGAAACAGAATTCGTATCTTTCTGACTGTAA
GATTAGAAAGTAATTGTCCTCCAATGACGTTCATGCTAGAATCTAATACT
ATTGTGATTGCCATAATCAAGAGCT
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