BQ623380

Overview
NameBQ623380
Unique NameBQ623380
TypeEST
OrganismCitrus sinensis (Sweet orange)
Sequence length375
Libraries
Library NameType
Ridge pineapple sweet orange entire seedlingcdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Alignments
Feature NameTypeLocationAnalysis
Csv1_Contig10040 contig Csv1_Contig10040:556..930. BLAST: Citrus Unigene V1 Contigs to Prunus persica proteins V1
Homology
[Close]
BLAST of BQ623380 vs. ExPASy Swiss-Prot
Match: CB21_SOYBN (Chlorophyll a-b binding protein, chloroplastic (Fragment) OS=Glycine max PE=2 SV=1)

HSP 1 Score: 65.4698 bits (158), Expect = 9.639e-11
Identity = 33/53 (62.26%), Postives = 39/53 (73.58%), Query Frame = 3 
Query:   12 DPQKFEEYKVKEIKNGRLALLAFVGFCVQQSAYPGTGPLENLATHLADPWHNN 170
            DP+ F E KVKEIKNGRLA+ +  GF V Q+   G GPLENLA HLA+P +NN
Sbjct:  182 DPEAFAELKVKEIKNGRLAMFSMFGFFV-QAIVTGKGPLENLADHLAEPVNNN 233
[Close]
BLAST of BQ623380 vs. ExPASy Swiss-Prot
Match: CB21_PETSP (Chlorophyll a-b binding protein 13, chloroplastic OS=Petunia sp. GN=CAB13 PE=3 SV=1)

HSP 1 Score: 65.4698 bits (158), Expect = 9.639e-11
Identity = 33/53 (62.26%), Postives = 39/53 (73.58%), Query Frame = 3 
Query:   12 DPQKFEEYKVKEIKNGRLALLAFVGFCVQQSAYPGTGPLENLATHLADPWHNN 170
            DP+ F E +VKEIKNGRLA+ +  GF V Q+   G GPLENLA HLADP +NN
Sbjct:  203 DPEAFAELEVKEIKNGRLAMFSMFGFFV-QAIVTGKGPLENLADHLADPVNNN 254
[Close]
BLAST of BQ623380 vs. ExPASy Swiss-Prot
Match: CB21_MAIZE (Chlorophyll a-b binding protein 1, chloroplastic OS=Zea mays GN=CAB1 PE=3 SV=1)

HSP 1 Score: 65.4698 bits (158), Expect = 9.639e-11
Identity = 32/53 (60.38%), Postives = 39/53 (73.58%), Query Frame = 3 
Query:   12 DPQKFEEYKVKEIKNGRLALLAFVGFCVQQSAYPGTGPLENLATHLADPWHNN 170
            DP+ F E KVKE+KNGRLA+ +  GF V Q+   G GPLENLA H+ADP +NN
Sbjct:  199 DPEAFAELKVKELKNGRLAMFSMFGFFV-QAIVTGKGPLENLADHIADPVNNN 250
[Close]
BLAST of BQ623380 vs. ExPASy Swiss-Prot
Match: CB21_ARATH (Chlorophyll a-b binding protein 165/180, chloroplastic OS=Arabidopsis thaliana GN=LHCP-A PE=1 SV=1)

HSP 1 Score: 65.4698 bits (158), Expect = 9.639e-11
Identity = 32/53 (60.38%), Postives = 39/53 (73.58%), Query Frame = 3 
Query:   12 DPQKFEEYKVKEIKNGRLALLAFVGFCVQQSAYPGTGPLENLATHLADPWHNN 170
            DP+ F E KVKE+KNGRLA+ +  GF V Q+   G GP+ENLA HLADP +NN
Sbjct:  204 DPEAFAELKVKELKNGRLAMFSMFGFFV-QAIVTGKGPIENLADHLADPVNNN 255
The following BLAST results are available for this feature:
BLAST of BQ623380 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 34
Match NameE-valueIdentityDescription
CB21_SOYBN9.639e-1162.26Chlorophyll a-b binding protein, chloroplastic (Fr... [more]
CB21_PETSP9.639e-1162.26Chlorophyll a-b binding protein 13, chloroplastic ... [more]
CB21_MAIZE9.639e-1160.38Chlorophyll a-b binding protein 1, chloroplastic O... [more]
CB21_ARATH9.639e-1160.38Chlorophyll a-b binding protein 165/180, chloropla... [more]

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Properties
Property NameValue
Genbank descriptionUSDA-FP_00471 Ridge pineapple sweet orange entire seedling Citrus sinensis cDNA clone USDA-FP_00471 5, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>BQ623380 ID=BQ623380; Name=BQ623380; organism=Citrus sinensis; type=EST; length=375bp
GCTTCTCCAAGGACCCCCAGAAGTTCGAGGAATACAAAGTCAAGGAGATA
AAAAATGGGCGTTTGGCATTGCTGGCATTTGTGGGTTTCTGCGTGCAACA
ATCAGCATATCCGGGCACAGGACCATTGGAGAACTTGGCAACTCACTTGG
CTGATCCATGGCACAACAACATTGGGGACGTTATTATCCCCAGAGGGATT
GTGCCTTGAAGAATTGCATTGTTAAATTATCCAATCCACTGTAAAATTCC
CTGTTAAAAGAGCCTTTAATGAAACAGAATTCGTATCTTTCTGACTGTAA
GATTAGAAAGTAATTGTCCTCCAATGACGTTCATGCTAGAATCTAATACT
ATTGTGATTGCCATAATCAAGAGCT
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