BQ623381

Overview
NameBQ623381
Unique NameBQ623381
TypeEST
OrganismCitrus sinensis (Sweet orange)
Sequence length689
Libraries
Library NameType
Ridge pineapple sweet orange entire seedlingcdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Alignments
Feature NameTypeLocationAnalysis
Csv1_Contig11023 contig Csv1_Contig11023:135..825. BLAST: Citrus Unigene V1 Contigs to Prunus persica proteins V1
Homology
BLAST of BQ623381 vs. ExPASy Swiss-Prot
Match: PSB1_RAT (Proteasome subunit beta type-1 OS=Rattus norvegicus GN=Psmb1 PE=1 SV=3)

HSP 1 Score: 162.155 bits (409), Expect = 6.992e-43
Identity = 76/152 (50.00%), Postives = 105/152 (69.08%), Query Frame = 2
Query:   38 WSPYDNNGGTCVAIAGADYCVTAADTRMSTGYSILSRDYSKIIKLADKCVMASSGFQADVKALQKLLAARHLIYQHQHNKQMSCPAMGQLLSNTLYYKRFFPYYSFNVLGGLDNEGKGCVYTYDAVGSYERVGYSSQGSGSTLIMPFLDNQL 493
            +SPY  NGGT +AIAG D+ + A+DTR+S G+SI +RD  K  KL DK V+  SGF  D   L K++ AR  +Y+H +NK M+  A+  +LS  LY +RFFPYY +N++ GLD EGKG VY++D VGSY+R  + + GS S ++ P LDNQ+
Sbjct:   29 FSPYAFNGGTVLAIAGEDFSIVASDTRLSEGFSIHTRDSPKCYKLTDKTVIGCSGFHGDCLTLTKIIEARLKMYKHSNNKAMTTGAIAAMLSTILYSRRFFPYYVYNIIEGLDEEGKGAVYSFDPVGSYQRDSFKAGGSASAMLQPLLDNQV 180          

HSP 2 Score: 32.7278 bits (73), Expect = 6.992e-43
Identity = 14/24 (58.33%), Postives = 18/24 (75.00%), Query Frame = 1
Query:  580 FASATERDIYTGNKLEIGVLTKMG 651
            F SA ERD+YTG+ L I ++TK G
Sbjct:  206 FISAAERDVYTGDALRICIVTKEG 229          
BLAST of BQ623381 vs. ExPASy Swiss-Prot
Match: PSB1_YEAST (Proteasome component C5 OS=Saccharomyces cerevisiae GN=PRE7 PE=1 SV=1)

HSP 1 Score: 135.961 bits (341), Expect = 8.317e-34
Identity = 71/153 (46.41%), Postives = 96/153 (62.75%), Query Frame = 2
Query:   38 WSPYDNNGGTCVAIAGADYCVTAADTRMSTGYSILSRDYSKIIKLADKCVMASSGFQADVKALQKLLAARHLIYQHQHN-KQMSCPAMGQLLSNTLYYKRFFPYYSFNVLGGLDNEGKGCVYTYDAVGSYERVGYSSQGSGSTLIMPFLDNQL 493
            ++PY +NGGT + IAG D+ V A DTR  T YSI SR   K+    D  VM+++GF AD  AL K        Y   HN K++S  +  + + + LY KRFFPYY   ++ GLD +GKG VY++D VGSYER    + G+ ++LIMPFLDNQ+
Sbjct:   21 FNPYGDNGGTILGIAGEDFAVLAGDTRNITDYSINSRYEPKVFDCGDNIVMSANGFAADGDALVKRFKNSVKWYHFDHNDKKLSINSAARNIQHLLYGKRFFPYYVHTIIAGLDEDGKGAVYSFDPVGSYEREQCRAGGAAASLIMPFLDNQV 173          

HSP 2 Score: 28.4906 bits (62), Expect = 8.317e-34
Identity = 14/24 (58.33%), Postives = 17/24 (70.83%), Query Frame = 1
Query:  580 FASATERDIYTGNKLEIGVLTKMG 651
            F SATER I  G+ LEI ++TK G
Sbjct:  207 FTSATERHIQVGDGLEILIVTKDG 230          
BLAST of BQ623381 vs. ExPASy Swiss-Prot
Match: PSB1_TRYBB (Proteasome subunit beta type-1 OS=Trypanosoma brucei brucei PE=2 SV=1)

HSP 1 Score: 138.658 bits (348), Expect = 2.390e-33
Identity = 80/185 (43.24%), Postives = 112/185 (60.54%), Query Frame = 2
Query:   23 KQHPA-WSPYDNNGGTCVAIAGADYCVTAADTRMSTGYSILSR-DYSKIIKLADKCVMASSGFQADVKALQKLLAARHLIYQHQHN-KQMSCPAMGQLLSNTLYYKRFFPYYSFNVLGGLDNEGKGCVYTYDAVGSYERVGYSSQGSGSTLIMPFLD-----NQLKSPSPLLLPAQDAVTPLSEA 553
            K HP  WSPY +NGGT  AIAG++Y V  ADTR++  + I +R D SK+ KL D+  +ASSG QAD   LQ++L  R   YQ+ +  K  S  A+ +L S  LY +RFFPYY+FN++ G+D +G G  Y+YD VGS E   Y + GS S+ + P LD       + + +P  L  ++A+  L  A
Sbjct:   39 KGHPQHWSPYTDNGGTIAAIAGSNYVVLGADTRLNGDFCIHTRSDTSKLFKLTDRIFLASSGMQADRLQLQQMLKYRIQWYQYNNGGKVPSTKAIAKLTSTMLYQRRFFPYYTFNMIVGIDEKGAGVCYSYDPVGSTEPFRYGTCGSASSFVEPLLDCLLTRQHMVTQAPADLTMEEALGMLKNA 223          

HSP 2 Score: 24.2534 bits (51), Expect = 2.390e-33
Identity = 10/24 (41.67%), Postives = 15/24 (62.50%), Query Frame = 1
Query:  580 FASATERDIYTGNKLEIGVLTKMG 651
            F  A ERDI+TG+ +   ++T  G
Sbjct:  224 FTGAAERDIFTGDTVCFHIITADG 247          
BLAST of BQ623381 vs. ExPASy Swiss-Prot
Match: PSB1_CAEEL (Proteasome subunit beta type-1 OS=Caenorhabditis elegans GN=pbs-6 PE=1 SV=2)

HSP 1 Score: 140.584 bits (353), Expect = 4.054e-33
Identity = 67/153 (43.79%), Postives = 99/153 (64.71%), Query Frame = 2
Query:   38 WSPYDNNGGTCVAIAGADYCVTAADTRMSTG-YSILSRDYSKIIKLADKCVMASSGFQADVKALQKLLAARHLIYQHQHNKQMSCPAMGQLLSNTLYYKRFFPYYSFNVLGGLDNEGKGCVYTYDAVGSYERVGYSSQGSGSTLIMPFLDNQL 493
            W+PY   GG+  AI+G ++ + A+DTRM+    +IL+RD  KI  L D  ++ +SGF  DV  L+K+L +R   Y+  +   MS     +LLS  LYY+RFFPYY+  +L G+D  GKG V++YD +G  ER+GYS+ G+   +I+PFLD Q+
Sbjct:   44 WNPYSMEGGSTCAISGENFAIVASDTRMTQNDINILTRDAEKIQILNDNIILTTSGFYGDVLQLKKVLQSRLHKYRFDYRSDMSVDLCAELLSRNLYYRRFFPYYTGAILAGIDEHGKGAVFSYDPIGCIERLGYSASGAAEPMIIPFLDCQI 196          

HSP 2 Score: 21.557 bits (44), Expect = 4.054e-33
Identity = 8/17 (47.06%), Postives = 12/17 (70.59%), Query Frame = 1
Query:  580 FASATERDIYTGNKLEI 630
            F  A ER+I TG+K+ +
Sbjct:  223 FRGAAEREISTGDKIHL 239          
BLAST of BQ623381 vs. ExPASy Swiss-Prot
Match: PSB1_SCHPO (Probable proteasome subunit beta type-1 OS=Schizosaccharomyces pombe GN=pam1 PE=2 SV=1)

HSP 1 Score: 135.191 bits (339), Expect = 3.188e-31
Identity = 66/152 (43.42%), Postives = 94/152 (61.84%), Query Frame = 2
Query:   38 WSPYDNNGGTCVAIAGADYCVTAADTRMSTGYSILSRDYSKIIKLADKCVMASSGFQADVKALQKLLAARHLIYQHQHNKQMSCPAMGQLLSNTLYYKRFFPYYSFNVLGGLDNEGKGCVYTYDAVGSYERVGYSSQGSGSTLIMPFLDNQL 493
            + PY  NGGT VAIAG  + + A DTR   GY+I +R   ++ ++ D  V+ +SGF+AD  AL K +  R  +Y   H ++MS  +   ++   LY KRFFPYY +  + G+D EGKG +Y++D VGSYER    + GS +  I PFLDNQ+
Sbjct:    6 FDPYVQNGGTTVAIAGDGFAILAGDTRSVNGYNINTRFQPRVHEVGDDLVIGASGFEADALALVKRIQQRIDLYHDNHERKMSAQSCACMVRTLLYGKRFFPYYVYTTVAGIDKEGKGEIYSFDPVGSYEREWCRAGGSAANFITPFLDNQV 157          
BLAST of BQ623381 vs. ExPASy Swiss-Prot
Match: PSB1_ENCCU (Probable proteasome subunit beta type-1 OS=Encephalitozoon cuniculi GN=PRE7 PE=1 SV=1)

HSP 1 Score: 103.219 bits (256), Expect = 1.820e-22
Identity = 58/150 (38.67%), Postives = 88/150 (58.67%), Query Frame = 2
Query:   38 WSPYDNNGGTCVAIAGADYCVTAADTRMSTGYSILSRDYSKIIKLADKCVMASSGFQADVKALQKLLAARHLIYQHQHNKQMSCPAMGQLLSNTLYYKRFFPYYSFNVLGGLDNEGKGCVYTYDAVGSYERVGYSSQGSGSTLIMPFLDN 487
            + PY++N GT + +   D+ V A DTR S+   I SR+ SKI ++ D  ++  +GF AD   +   +   + I Q++ +  ++  +   LLS  LY KRFFPYYSF VL G + +GK  VY+YD +GS+  V     GSG ++I P LD+
Sbjct:   83 FDPYEDNSGTTICLKQGDFIVVAGDTRHSSSMVINSREMSKIFQVGD-FLLTGTGFYADTHEVYVKMV--YEIRQYEVDDSINIHSAANLLSKILYSKRFFPYYSFCVLSGFE-KGKPYVYSYDPIGSFGSVTCVCSGSGRSMIQPLLDS 228          

HSP 2 Score: 23.0978 bits (48), Expect = 1.820e-22
Identity = 10/20 (50.00%), Postives = 14/20 (70.00%), Query Frame = 1
Query:  580 FASATERDIYTGNKLEIGVL 639
            F SA ERD+ T + LE+ V+
Sbjct:  256 FNSAAERDVKTKDNLEVCVM 275          
BLAST of BQ623381 vs. ExPASy Swiss-Prot
Match: PSMB_PYRHO (Proteasome subunit beta OS=Pyrococcus horikoshii GN=psmB PE=3 SV=1)

HSP 1 Score: 84.3445 bits (207), Expect = 1.218e-16
Identity = 51/146 (34.93%), Postives = 78/146 (53.42%), Query Frame = 2
Query:   59 GGTCVAIAGADYCVTAADTRMSTGYSILSRDYSKIIKLADKCVMASSGFQADVKALQKLLAARHLIYQHQHNKQMSCPAMGQLLSNTLYYKRFFPYYSFNVLGGLDNEGKGCVYTYDAVGSYERVGYSSQGSGSTLIMPFLDNQLK 496
            G T V I   D  V AAD R S G  I +R+ +KI K+ +   +A +G   D+  L +LL A   +Y  Q  K+MS  A+  LL+N +   ++FPY ++ ++GG D + K  +Y+ D VG      Y++ GSG       LD++ K
Sbjct:   10 GTTTVGIVCKDGVVLAADRRASLGNIIYARNVTKIHKIDEHLAIAGAGDVGDILNLVRLLRAEAKLYYSQSGKRMSVKALATLLANIMNGAKYFPYLAWFLVGGYDEKPK--LYSVDMVGGITEDKYATAGSGMEFAYSILDSEYK 153          

HSP 2 Score: 22.3274 bits (46), Expect = 1.218e-16
Identity = 7/23 (30.43%), Postives = 17/23 (73.91%), Query Frame = 1
Query:  586 SATERDIYTGNKLEIGVLTKMGF 654
            +A +RD+++G+ + +  +TK G+
Sbjct:  171 TAIKRDVFSGDGILVVTITKEGY 193          
BLAST of BQ623381 vs. ExPASy Swiss-Prot
Match: PSB3_SCHPO (Probable proteasome subunit beta type-3 OS=Schizosaccharomyces pombe GN=SPCC63.12c PE=2 SV=1)

HSP 1 Score: 83.5741 bits (205), Expect = 1.101e-15
Identity = 39/121 (32.23%), Postives = 69/121 (57.02%), Query Frame = 2
Query:   56 NGGTCVAIAGADYCVTAADTRMSTGYSILSRDYSKIIKLADKCVMASSGFQADVKALQKLLAARHLIYQHQHNKQMSCPAMGQLLSNTLYYKRFFPYYSFNVLGGLDNEGKGCVYTYDAVG 418
            NGG+CVA+AG +    A+D R+      L+ ++ K+  + DK  +  +G   DV+ L +L   +  +Y+ +  +Q+       L+S+TLY KRF PY+SF V+ G+ N+    +  +D++G
Sbjct:    7 NGGSCVAMAGKNCVAIASDLRLGVQSISLTNNFPKVFAMGDKTYLGLTGLATDVQTLYELFRYKVNLYKFREERQIQPKTFANLVSSTLYEKRFGPYFSFPVVAGVSNDNTPFICGFDSIG 127          
BLAST of BQ623381 vs. ExPASy Swiss-Prot
Match: PSMB_PYRFU (Proteasome subunit beta OS=Pyrococcus furiosus GN=psmB PE=3 SV=1)

HSP 1 Score: 78.5666 bits (192), Expect = 2.179e-15
Identity = 46/146 (31.51%), Postives = 78/146 (53.42%), Query Frame = 2
Query:   59 GGTCVAIAGADYCVTAADTRMSTGYSILSRDYSKIIKLADKCVMASSGFQADVKALQKLLAARHLIYQHQHNKQMSCPAMGQLLSNTLYYKRFFPYYSFNVLGGLDNEGKGCVYTYDAVGSYERVGYSSQGSGSTLIMPFLDNQLK 496
            G T V +   +  V AADTR S G  I +++ +KI K+ +   +A +G   D+  L +LL A   +Y+    K+MS  A+  LL+N L   ++FPY  + ++GG D + +  +++ D VG      Y++ GSG       LD++ +
Sbjct:   10 GTTTVGLVCKEGVVLAADTRASLGNIIYAKNVTKIHKIDEHLAIAGAGDVGDILNLVRLLKAEANLYKSTVGKEMSVKALATLLANILNGSKYFPYLGWFLVGGYDEKPR--LFSVDMVGGITEDNYAAAGSGMEFAYSILDSEYR 153          

HSP 2 Score: 23.8682 bits (50), Expect = 2.179e-15
Identity = 9/22 (40.91%), Postives = 16/22 (72.73%), Query Frame = 1
Query:  589 ATERDIYTGNKLEIGVLTKMGF 654
            A +RD++TG+ L +  +TK G+
Sbjct:  172 AIKRDVFTGDGLLVVTITKDGY 193          
BLAST of BQ623381 vs. ExPASy Swiss-Prot
Match: PSB3_PICMA (Proteasome subunit beta type-3 OS=Picea mariana GN=PBC1 PE=2 SV=1)

HSP 1 Score: 80.8777 bits (198), Expect = 7.136e-15
Identity = 42/129 (32.56%), Postives = 67/129 (51.94%), Query Frame = 2
Query:   41 SPYDNNGGTCVAIAGADYCVTAADTRMSTGYSILSRDYSKIIKLADKCVMASSGFQADVKALQKLLAARHLIYQHQHNKQMSCPAMGQLLSNTLYYKRFFPYYSFNVLGGLDNEGKGCVYTYDAVGSYE 427
            S ++ NG   VA+ G +    A+D R+      ++ D+ +I K+ DK  +  SG   DV+ L +  A RH +YQ +  + M       L+S  LY KRF PY+   V+ GL  + K  + T D++G+ E
Sbjct:    2 SIFEYNGSALVAMVGKNCFAIASDRRLGVQLQTIATDFQRIFKIHDKLYVGLSGLATDVQTLYQRFAFRHKLYQLREERNMRPETFASLVSALLYEKRFGPYFCQPVIAGLGEDDKPFICTMDSIGAKE 130          
The following BLAST results are available for this feature:
BLAST of BQ623381 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 31
Match NameE-valueIdentityDescription
PSB1_RAT6.992e-4350.00Proteasome subunit beta type-1 OS=Rattus norvegicu... [more]
PSB1_YEAST8.317e-3446.41Proteasome component C5 OS=Saccharomyces cerevisia... [more]
PSB1_TRYBB2.390e-3343.24Proteasome subunit beta type-1 OS=Trypanosoma bruc... [more]
PSB1_CAEEL4.054e-3343.79Proteasome subunit beta type-1 OS=Caenorhabditis e... [more]
PSB1_SCHPO3.188e-3143.42Probable proteasome subunit beta type-1 OS=Schizos... [more]
PSB1_ENCCU1.820e-2238.67Probable proteasome subunit beta type-1 OS=Encepha... [more]
PSMB_PYRHO1.218e-1634.93Proteasome subunit beta OS=Pyrococcus horikoshii G... [more]
PSB3_SCHPO1.101e-1532.23Probable proteasome subunit beta type-3 OS=Schizos... [more]
PSMB_PYRFU2.179e-1531.51Proteasome subunit beta OS=Pyrococcus furiosus GN=... [more]
PSB3_PICMA7.136e-1532.56Proteasome subunit beta type-3 OS=Picea mariana GN... [more]

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Properties
Property NameValue
Genbank descriptionUSDA-FP_00472 Ridge pineapple sweet orange entire seedling Citrus sinensis cDNA clone USDA-FP_00472 5, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>BQ623381 ID=BQ623381; Name=BQ623381; organism=Citrus sinensis; type=EST; length=689bp
TTACTGACAATTCATCATGACGAAGCAGCATCCCGCATGGTCTCCATACG
ACAATAATGGAGGAACTTGTGTTGCGATTGCCGGAGCTGATTACTGTGTA
ACCGCTGCCGACACTCGAATGTCAACCGGTTACAGTATCCTCTCCCGCGA
TTACTCCAAAATCATTAAACTGGCAGACAAATGTGTTATGGCCTCTTCTG
GTTTTCAAGCTGATGTCAAAGCCTTACAAAAACTCTTGGCAGCAAGGCAT
TTGATCTATCAGCATCAGCACAACAAGCAAATGAGCTGCCCTGCAATGGG
CCAACTACTCTCCAACACCCTGTACTACAAACGTTTCTTTCCTTACTATT
CATTTAATGTCTTGGGTGGGCTTGACAATGAAGGGAAGGGTTGTGTCTAC
ACATATGATGCTGTTGGTTCCTATGAGAGGGTTGGATATAGCTCCCAGGG
TTCTGGTTCCACGCTCATCATGCCATTCCTCGATAACCAACTAAAGTCTC
CCAGTCCTCTCCTATTGCCTGCCCAGGATGCTGTTACTCCTCTTTCAGAG
GCTGAAGCAGTTGATTTGGTCAAACTTGGTTTGCATCAGCAACTGAGAGG
GACATATACACGGGAAACAAACTTGAAATTGGTGTCCTAACAAAGATGGG
ATTTATCGTGAATACATGGAACTGAGGAAGGATTAATCT
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