BQ623381

Overview
NameBQ623381
Unique NameBQ623381
TypeEST
OrganismCitrus sinensis (Sweet orange)
Sequence length689
Libraries
Library NameType
Ridge pineapple sweet orange entire seedlingcdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Alignments
Feature NameTypeLocationAnalysis
Csv1_Contig11023 contig Csv1_Contig11023:135..825. BLAST: Citrus Unigene V1 Contigs to Prunus persica proteins V1
Homology
BLAST of BQ623381 vs. ExPASy Swiss-Prot
Match: PSB3A_ARATH (Proteasome subunit beta type-3-A OS=Arabidopsis thaliana GN=PBC1 PE=1 SV=2)

HSP 1 Score: 78.1814 bits (191), Expect = 4.626e-14
Identity = 41/129 (31.78%), Postives = 67/129 (51.94%), Query Frame = 2
Query:   41 SPYDNNGGTCVAIAGADYCVTAADTRMSTGYSILSRDYSKIIKLADKCVMASSGFQADVKALQKLLAARHLIYQHQHNKQMSCPAMGQLLSNTLYYKRFFPYYSFNVLGGLDNEGKGCVYTYDAVGSYE 427
            S ++ NG   VA+ G +    A+D R+      ++ D+ +I K+ D+  +  SG   DV+ L + L  RH +YQ +  + M       L+S  LY KRF PY    V+ GL ++ K  + T D++G+ E
Sbjct:    2 SIFEYNGSAVVAMVGKNCFAIASDRRLGVQLQTIATDFQRISKIHDRVFIGLSGLATDVQTLYQRLVFRHKLYQLREERDMKPETFASLVSAILYEKRFGPYLCQPVIAGLGDDDKPFICTMDSIGAKE 130          
BLAST of BQ623381 vs. ExPASy Swiss-Prot
Match: PSB3_ORYSJ (Proteasome subunit beta type-3 OS=Oryza sativa subsp. japonica GN=PBC1 PE=2 SV=1)

HSP 1 Score: 77.411 bits (189), Expect = 7.890e-14
Identity = 39/129 (30.23%), Postives = 65/129 (50.39%), Query Frame = 2
Query:   41 SPYDNNGGTCVAIAGADYCVTAADTRMSTGYSILSRDYSKIIKLADKCVMASSGFQADVKALQKLLAARHLIYQHQHNKQMSCPAMGQLLSNTLYYKRFFPYYSFNVLGGLDNEGKGCVYTYDAVGSYE 427
            S ++ NG   VA+ G +    A+D R+      ++ D+ ++ K+ DK  +  SG   D + L + L  RH +YQ +  + M       L+S  LY KRF PY+   V+ GL  + +  + T D +G+ E
Sbjct:    2 SIFEYNGSAVVAMVGKNCFAIASDRRLGVQLQTVATDFQRVFKIHDKLYIGLSGLATDAQTLYQRLVFRHKLYQLREERDMKPQTFASLVSALLYEKRFGPYFCQPVIAGLGEDNEPFICTMDCIGAKE 130          
BLAST of BQ623381 vs. ExPASy Swiss-Prot
Match: PSB3_DICDI (Proteasome subunit beta type-3 OS=Dictyostelium discoideum GN=psmB3 PE=3 SV=1)

HSP 1 Score: 77.411 bits (189), Expect = 7.890e-14
Identity = 36/107 (33.64%), Postives = 59/107 (55.14%), Query Frame = 2
Query:   56 NGGTCVAIAGADYCVTAADTRMSTGYSILSRDYSKIIKLADKCVMASSGFQADVKALQKLLAARHLIYQHQHNKQMSCPAMGQLLSNTLYYKRFFPYYSFNVLGGLD 376
            NGG C+ + G +    A+D R       +S D+ K+ ++ DKC +  SG   D + L + L  RH +Y+ +  + MS   +  LL+N LY KRF PY++  ++ GL+
Sbjct:    7 NGGACIVMVGKNCVAIASDLRFGIQQQTISNDFPKVYRINDKCFVGISGLVTDAQTLYQKLVFRHNLYKLREERDMSPRVVSNLLTNMLYEKRFGPYFTEPLICGLE 113          
BLAST of BQ623381 vs. ExPASy Swiss-Prot
Match: PSMB_PYRAB (Proteasome subunit beta OS=Pyrococcus abyssi GN=psmB PE=3 SV=1)

HSP 1 Score: 77.0258 bits (188), Expect = 1.030e-13
Identity = 47/146 (32.19%), Postives = 76/146 (52.05%), Query Frame = 2
Query:   59 GGTCVAIAGADYCVTAADTRMSTGYSILSRDYSKIIKLADKCVMASSGFQADVKALQKLLAARHLIYQHQHNKQMSCPAMGQLLSNTLYYKRFFPYYSFNVLGGLDNEGKGCVYTYDAVGSYERVGYSSQGSGSTLIMPFLDNQLK 496
            G T V I  +D  V AAD R S G  + +++ +KI K+ +   +A +G   D+  L +LL A   +Y  Q  K+MS  A+  LL+N L   R  PY ++ ++GG D + +  +Y+ D +G      Y + GSG       LD++ +
Sbjct:   10 GTTTVGIVCSDGVVLAADRRASLGNIVYAKNVTKIHKIDEHLAIAGAGDVGDILNLVRLLRAEAKLYYAQSGKRMSVKALATLLANMLNGARMLPYLAWFLVGGFDEKPR--LYSVDMMGGITEDKYVAAGSGMEFAYSVLDSEYR 153          
BLAST of BQ623381 vs. ExPASy Swiss-Prot
Match: PSMB_METTE (Proteasome subunit beta OS=Methanosarcina thermophila GN=psmB PE=3 SV=1)

HSP 1 Score: 73.1738 bits (178), Expect = 1.107e-13
Identity = 43/147 (29.25%), Postives = 79/147 (53.74%), Query Frame = 2
Query:   59 GGTCVAIAGADYCVTAADTRMSTGYSILSRDYSKIIKLADKCVMASSGFQADVKALQKLLAARHLIYQHQHNKQMSCPAMGQLLSNTLYYKRFFPYYSFNVLGGLDNEGKGCVYTYDAV-GSYERVGYSSQGSGSTLIMPFLDNQLK 496
            G T V +   D  V A++ R + G+ I S+   K+ ++ D   M ++G   D + L +L++    +Y+ + ++ M+   +  L+SN L   R++P     ++GG+D  G G +Y+ DA+ GS E    S+ GSGS +    L++Q +
Sbjct:    9 GTTTVGVVCTDGIVLASEQRATMGHFIASKTAKKVYQIDDLVGMTTAGSVGDAQQLVRLVSVESQLYKMRRDESMTIKGITTLMSNFLSRNRYYPMMVQLLIGGVDKNGPG-IYSLDAMGGSIEETRISATGSGSPMAYGVLEDQYR 154          

HSP 2 Score: 23.483 bits (49), Expect = 1.107e-13
Identity = 9/23 (39.13%), Postives = 16/23 (69.57%), Query Frame = 1
Query:  586 SATERDIYTGNKLEIGVLTKMGF 654
            +AT+RD  +G  +++ V+TK  F
Sbjct:  172 NATKRDSASGENIDVVVITKEAF 194          
BLAST of BQ623381 vs. ExPASy Swiss-Prot
Match: PSB3B_ARATH (Proteasome subunit beta type-3-B OS=Arabidopsis thaliana GN=PBC2 PE=1 SV=1)

HSP 1 Score: 75.8702 bits (185), Expect = 2.296e-13
Identity = 40/129 (31.01%), Postives = 66/129 (51.16%), Query Frame = 2
Query:   41 SPYDNNGGTCVAIAGADYCVTAADTRMSTGYSILSRDYSKIIKLADKCVMASSGFQADVKALQKLLAARHLIYQHQHNKQMSCPAMGQLLSNTLYYKRFFPYYSFNVLGGLDNEGKGCVYTYDAVGSYE 427
            S ++ NG   VA+ G +    A+D R+      ++ D+ +I K+ D   +  SG   DV+ L + L  RH +YQ +  + M       L+S  LY KRF P+    V+ GL ++ K  + T D++G+ E
Sbjct:    2 SIFEYNGSAVVAMVGKNCFAIASDRRLGVQLQTIATDFQRISKIHDHLFIGLSGLATDVQTLYQRLVFRHKLYQLREERDMKPETFASLVSAILYEKRFGPFLCQPVIAGLGDDNKPFICTMDSIGAKE 130          
BLAST of BQ623381 vs. ExPASy Swiss-Prot
Match: PSMB_METTH (Proteasome subunit beta OS=Methanobacterium thermoautotrophicum GN=psmB PE=3 SV=1)

HSP 1 Score: 68.9366 bits (167), Expect = 1.967e-12
Identity = 44/144 (30.56%), Postives = 72/144 (50.00%), Query Frame = 2
Query:   59 GGTCVAIAGADYCVTAADTRMSTGYSILSRDYSKIIKLADKCVMASSGFQADVKALQKLLAARHLIYQHQHNKQMSCPAMGQLLSNTLYYKRFFPYYSFNVLGGLDNEGKGCVYTYDAVGSYERVGYSSQGSGSTLIMPFLDNQ 490
            G T V I   D  V A + R S G  I  +   KI K+ +      +G  AD ++L K L A   +Y+ ++++++S  A   L +N L+  RF+P+    +LGG+D  G   +Y+ D  G      + S GSGS +    L+++
Sbjct:    9 GTTTVGITCKDGVVFATERRASMGNLIAHKATDKIFKIDEHIAATIAGSVADAQSLMKYLKAEAALYRMRNSEKISIEAAAALAANILHSSRFYPFIVQTLLGGVDENG-AKIYSLDPSGGMIPDKFVSTGSGSPVAYGVLEDR 151          

HSP 2 Score: 23.483 bits (49), Expect = 1.967e-12
Identity = 9/20 (45.00%), Postives = 14/20 (70.00%), Query Frame = 1
Query:  586 SATERDIYTGNKLEIGVLTK 645
            SA ERD Y+GN + +  +T+
Sbjct:  171 SAMERDTYSGNGILVATVTE 190          
BLAST of BQ623381 vs. ExPASy Swiss-Prot
Match: PSMB_METJA (Proteasome subunit beta OS=Methanocaldococcus jannaschii GN=psmB PE=1 SV=1)

HSP 1 Score: 64.3142 bits (155), Expect = 3.308e-12
Identity = 40/143 (27.97%), Postives = 70/143 (48.95%), Query Frame = 2
Query:   59 GGTCVAIAGADYCVTAADTRMSTGYSILSRDYSKIIKLADKCVMASSGFQADVKALQKLLAARHLIYQHQHNKQMSCPAMGQLLSNTLYYKRFFPYYSFNVLGGLDNEGKGCVYTYDAVGSY-ERVGYSSQGSGSTLIMPFLD 484
            G T V +   D  + A D R S G  +  ++  K+ K+ D   M  +G   D +A+ +LL A   +Y+ +  + +   A   LLSN L+  R FP+ +  ++GG D      +++ D +G   E   +++ GSGS +    L+
Sbjct:    6 GTTTVGLICDDAVILATDKRASLGNLVADKEAKKLYKIDDYIAMTIAGSVGDAQAIVRLLIAEAKLYKMRTGRNIPPLACATLLSNILHSSRMFPFLTQIIIGGYDLLEGAKLFSLDPLGGMNEEKTFTATGSGSPIAYGVLE 148          

HSP 2 Score: 27.335 bits (59), Expect = 3.308e-12
Identity = 11/22 (50.00%), Postives = 16/22 (72.73%), Query Frame = 1
Query:  586 SATERDIYTGNKLEIGVLTKMG 651
            SA ERD ++GN + + V+TK G
Sbjct:  170 SAMERDTFSGNGISLAVITKDG 191          
BLAST of BQ623381 vs. ExPASy Swiss-Prot
Match: PSB3_CAEEL (Proteasome subunit beta type-3 OS=Caenorhabditis elegans GN=pbs-3 PE=2 SV=1)

HSP 1 Score: 72.0182 bits (175), Expect = 3.315e-12
Identity = 37/144 (25.69%), Postives = 75/144 (52.08%), Query Frame = 2
Query:   59 GGTCVAIAGADYCVTAADTRMSTGYSILSRDYSKIIKLADKCVMASSGFQADVKALQKLLAARHLIYQHQHNKQMSCPAMGQLLSNTLYYKRFFPYYSFNVLGGLDNEGKGCVYTYDAVGSYERV-GYSSQGSGSTLIMPFLDN 487
            GGT VA+AG +    A+D R+    + ++ D  K+ K+ DK  +  +GFQ+D + + + +  R  +Y+ + N+ +    + +++SN  Y  RF  Y++  ++ GLD+  K  +   D +G       + + G+G   ++   +N
Sbjct:    8 GGTVVAMAGDECVCIASDLRIGEQMTTIATDQKKVHKVTDKVYVGLAGFQSDARTVLEKIMFRKNLYELRENRNIKPQVLSEMISNLAYQHRFGSYFTEPLVAGLDDTNKPYICCMDTIGCVSAPRDFVAVGTGQEYLLGVCEN 151          
BLAST of BQ623381 vs. ExPASy Swiss-Prot
Match: PSB3_GIALA (Proteasome subunit beta type-3 OS=Giardia lamblia GN=PRSBETA3 PE=2 SV=1)

HSP 1 Score: 70.8626 bits (172), Expect = 3.320e-12
Identity = 40/170 (23.53%), Postives = 81/170 (47.65%), Query Frame = 2
Query:   47 YDNNGGTCVAIAGADYCVTAADTRMSTGYSILS-RDYSKIIKLADKCVMASSGFQADVKALQKLLAARHLIYQHQHNKQMSCPAMGQLLSNTLYYKRFFPYYSFNVLGGLDNEGKGCVYTYDAVGSYER-VGYSSQGSGSTLIMPFLDNQLKSPSPLLLPAQDAVTPLSE 550
            ++ NG   + I G D    AAD R+   Y  L+  +  +I +L+  C++  +G Q DV    + +  +  +Y  Q ++++   A  +++S+ LY  RF PY+   ++ G + +GK  +   D +G  +    +   G+ S  ++   +  +K        ++D + PL E
Sbjct:    5 WEYNGSALIGIKGXDCVALAADKRLGCSYQTLTIGNEERIFRLSQSCLLGLAGLQTDVLTTYRQIRMKSNLYHLQEDREIRPRATAKMISSFLYKHRFGPYFISPIIAGFEADGKPYLGAMDTIGCLDDCTNFQIAGTASDFLLGLCETHVKPDM-----SEDEILPLME 169          

HSP 2 Score: 20.7866 bits (42), Expect = 3.320e-12
Identity = 10/22 (45.45%), Postives = 13/22 (59.09%), Query Frame = 1
Query:  586 SATERDIYTGNKLEIGVLTKMG 651
            SAT RD Y+G    + VL + G
Sbjct:  174 SATNRDAYSGWGAHVVVLRRDG 195          
The following BLAST results are available for this feature:
BLAST of BQ623381 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 31
Match NameE-valueIdentityDescription
PSB3A_ARATH4.626e-1431.78Proteasome subunit beta type-3-A OS=Arabidopsis th... [more]
PSB3_ORYSJ7.890e-1430.23Proteasome subunit beta type-3 OS=Oryza sativa sub... [more]
PSB3_DICDI7.890e-1433.64Proteasome subunit beta type-3 OS=Dictyostelium di... [more]
PSMB_PYRAB1.030e-1332.19Proteasome subunit beta OS=Pyrococcus abyssi GN=ps... [more]
PSMB_METTE1.107e-1329.25Proteasome subunit beta OS=Methanosarcina thermoph... [more]
PSB3B_ARATH2.296e-1331.01Proteasome subunit beta type-3-B OS=Arabidopsis th... [more]
PSMB_METTH1.967e-1230.56Proteasome subunit beta OS=Methanobacterium thermo... [more]
PSMB_METJA3.308e-1227.97Proteasome subunit beta OS=Methanocaldococcus jann... [more]
PSB3_CAEEL3.315e-1225.69Proteasome subunit beta type-3 OS=Caenorhabditis e... [more]
PSB3_GIALA3.320e-1223.53Proteasome subunit beta type-3 OS=Giardia lamblia ... [more]

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Properties
Property NameValue
Genbank descriptionUSDA-FP_00472 Ridge pineapple sweet orange entire seedling Citrus sinensis cDNA clone USDA-FP_00472 5, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>BQ623381 ID=BQ623381; Name=BQ623381; organism=Citrus sinensis; type=EST; length=689bp
TTACTGACAATTCATCATGACGAAGCAGCATCCCGCATGGTCTCCATACG
ACAATAATGGAGGAACTTGTGTTGCGATTGCCGGAGCTGATTACTGTGTA
ACCGCTGCCGACACTCGAATGTCAACCGGTTACAGTATCCTCTCCCGCGA
TTACTCCAAAATCATTAAACTGGCAGACAAATGTGTTATGGCCTCTTCTG
GTTTTCAAGCTGATGTCAAAGCCTTACAAAAACTCTTGGCAGCAAGGCAT
TTGATCTATCAGCATCAGCACAACAAGCAAATGAGCTGCCCTGCAATGGG
CCAACTACTCTCCAACACCCTGTACTACAAACGTTTCTTTCCTTACTATT
CATTTAATGTCTTGGGTGGGCTTGACAATGAAGGGAAGGGTTGTGTCTAC
ACATATGATGCTGTTGGTTCCTATGAGAGGGTTGGATATAGCTCCCAGGG
TTCTGGTTCCACGCTCATCATGCCATTCCTCGATAACCAACTAAAGTCTC
CCAGTCCTCTCCTATTGCCTGCCCAGGATGCTGTTACTCCTCTTTCAGAG
GCTGAAGCAGTTGATTTGGTCAAACTTGGTTTGCATCAGCAACTGAGAGG
GACATATACACGGGAAACAAACTTGAAATTGGTGTCCTAACAAAGATGGG
ATTTATCGTGAATACATGGAACTGAGGAAGGATTAATCT
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