BQ623382

Overview
NameBQ623382
Unique NameBQ623382
TypeEST
OrganismCitrus sinensis (Sweet orange)
Sequence length615
Libraries
Library NameType
Ridge pineapple sweet orange entire seedlingcdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Alignments
Feature NameTypeLocationAnalysis
Csv1_Contig6338 contig Csv1_Contig6338:87..701. BLAST: Citrus Unigene V1 Contigs to Prunus persica proteins V1
Homology
BLAST of BQ623382 vs. ExPASy Swiss-Prot
Match: DJB11_CANFA (DnaJ homolog subfamily B member 11 OS=Canis familiaris GN=DNAJB11 PE=1 SV=2)

HSP 1 Score: 73.1738 bits (178), Expect = 1.198e-12
Identity = 38/106 (35.85%), Postives = 60/106 (56.60%), Query Frame = 1
Query:    1 DTVTGDIVFVLQQKEHPKFKRKGDDLFVEHTLSLTEALCGFQFVITHLDGRQLLIKSQPGEVVKPDQFKAINDEGMPMYQRPFMRGKLYIHFSVDFPESLSPDQCK 318
            D   GD+ F ++  +HP F+R+GDDL+   T+SL E+L GF   ITHLDG ++ I     ++ +P        EG+P +    ++G L I F VDFP+    ++ +
Sbjct:  233 DGEPGDLRFRIKVVKHPIFERRGDDLYTNVTISLVESLVGFDMDITHLDGHKVHISRD--KITRPGAKLWKKGEGLPNFDNNNIKGSLIITFDVDFPKEQLTEEAR 336          
BLAST of BQ623382 vs. ExPASy Swiss-Prot
Match: DJB11_RAT (DnaJ homolog subfamily B member 11 OS=Rattus norvegicus GN=Dnajb11 PE=2 SV=1)

HSP 1 Score: 72.4034 bits (176), Expect = 2.043e-12
Identity = 39/106 (36.79%), Postives = 60/106 (56.60%), Query Frame = 1
Query:    1 DTVTGDIVFVLQQKEHPKFKRKGDDLFVEHTLSLTEALCGFQFVITHLDGRQLLIKSQPGEVVKPDQFKAINDEGMPMYQRPFMRGKLYIHFSVDFPESLSPDQCK 318
            D   GD+ F ++  +H  F+R+GDDL+   T+SL EAL GF+  ITHLDG ++ I     ++ +P        EG+P +    ++G L I F VDFP+    ++ K
Sbjct:  233 DGEPGDLRFRIKVVKHRIFERRGDDLYTNVTVSLVEALVGFEMDITHLDGHKVHISRD--KITRPGAKLWKKGEGLPNFDNNNIKGSLIITFDVDFPKEQLTEEAK 336          
BLAST of BQ623382 vs. ExPASy Swiss-Prot
Match: DJB11_MOUSE (DnaJ homolog subfamily B member 11 OS=Mus musculus GN=Dnajb11 PE=1 SV=1)

HSP 1 Score: 72.4034 bits (176), Expect = 2.043e-12
Identity = 39/106 (36.79%), Postives = 60/106 (56.60%), Query Frame = 1
Query:    1 DTVTGDIVFVLQQKEHPKFKRKGDDLFVEHTLSLTEALCGFQFVITHLDGRQLLIKSQPGEVVKPDQFKAINDEGMPMYQRPFMRGKLYIHFSVDFPESLSPDQCK 318
            D   GD+ F ++  +H  F+R+GDDL+   T+SL EAL GF+  ITHLDG ++ I     ++ +P        EG+P +    ++G L I F VDFP+    ++ K
Sbjct:  233 DGEPGDLRFRIKVVKHRIFERRGDDLYTNVTVSLVEALVGFEMDITHLDGHKVHISRD--KITRPGAKLWKKGEGLPNFDNNNIKGSLIITFDVDFPKEQLTEEAK 336          
BLAST of BQ623382 vs. ExPASy Swiss-Prot
Match: DJB11_BOVIN (DnaJ homolog subfamily B member 11 OS=Bos taurus GN=DNAJB11 PE=2 SV=1)

HSP 1 Score: 70.4774 bits (171), Expect = 7.765e-12
Identity = 41/113 (36.28%), Postives = 64/113 (56.64%), Query Frame = 1
Query:    1 DTVTGDIVFVLQQKEHPKFKRKGDDLFVEHTLSLTEALCGFQFVITHLDGRQLLIKSQPGEVVKPDQFKAINDEGMPMYQRPFMRGKLYIHFSVDFP-ESLSPDQCKMLETVL 336
            D   GD+ F ++  +H  F+R+GDDL+   T+SL E+L GF   ITHLDG ++ I     ++ +P        EG+P +    ++G L I F VDFP E LS +  + ++ +L
Sbjct:  233 DGEPGDLRFRIKVVKHSIFERRGDDLYTNVTISLVESLVGFDMDITHLDGHKVHISRD--KITRPGAKLWKKGEGLPNFDNNNIKGSLIITFDVDFPKEQLSEEAREGIKQLL 343          
The following BLAST results are available for this feature:
BLAST of BQ623382 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 44
Match NameE-valueIdentityDescription
DJB11_CANFA1.198e-1235.85DnaJ homolog subfamily B member 11 OS=Canis famili... [more]
DJB11_RAT2.043e-1236.79DnaJ homolog subfamily B member 11 OS=Rattus norve... [more]
DJB11_MOUSE2.043e-1236.79DnaJ homolog subfamily B member 11 OS=Mus musculus... [more]
DJB11_BOVIN7.765e-1236.28DnaJ homolog subfamily B member 11 OS=Bos taurus G... [more]

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Properties
Property NameValue
Genbank descriptionUSDA-FP_00473 Ridge pineapple sweet orange entire seedling Citrus sinensis cDNA clone USDA-FP_00473 5, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>BQ623382 ID=BQ623382; Name=BQ623382; organism=Citrus sinensis; type=EST; length=615bp
GACACTGTCACAGGTGACATTGTATTTGTTCTACAACAGAAAGAGCACCC
GAAATTTAAGCGAAAGGGTGATGACCTATTTGTTGAGCACACCCTGTCAC
TGACAGAAGCTCTCTGTGGCTTTCAATTTGTAATAACTCATTTGGATGGC
CGGCAACTCCTCATCAAATCCCAGCCTGGGGAAGTAGTCAAGCCGGACCA
ATTCAAGGCCATAAATGATGAAGGAATGCCTATGTATCAGAGGCCATTTA
TGAGGGGCAAACTGTACATTCATTTCAGTGTTGACTTCCCTGAGTCACTG
AGCCCAGACCAGTGCAAGATGCTGGAGACCGTACTACCTCCAAGGACCTC
AGTCCAGCTCACCGATATGGAACTGGATGAGTGTGAAGAAACAACCCTGC
ATGATGTGAACATTGAGGAGGAAATGCGAAGGAAGCAACAAGCAGCTCAG
GAGGCATACGATGAAGATGACGATATGCAAGGTGGTGCCCAGAGAGTGCA
GTGTGCTCAGCAGTGATGATGTAGAAGAAAAGGGGTGGCCTGATTTAGTA
TTTTCATTGGTTAGGGAAAAAAGATTCTCAACATATTTATTTTTCTGTTA
TAGGCTTTAAAGGTT
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