BQ623385

Overview
NameBQ623385
Unique NameBQ623385
TypeEST
OrganismCitrus sinensis (Sweet orange)
Sequence length412
Libraries
Library NameType
Ridge pineapple sweet orange entire seedlingcdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Alignments
Feature NameTypeLocationAnalysis
Csv1_Contig2542 contig Csv1_Contig2542:360..771. BLAST: Citrus Unigene V1 Contigs to Prunus persica proteins V1
Homology
BLAST of BQ623385 vs. ExPASy Swiss-Prot
Match: GPX8_DANRE (Probable glutathione peroxidase 8 OS=Danio rerio GN=gpx8 PE=2 SV=1)

HSP 1 Score: 78.9518 bits (193), Expect = 8.559e-15
Identity = 41/121 (33.88%), Postives = 63/121 (52.07%), Query Frame = 2
Query:    2 TNSNYTELSQLYDKYKNQGLEILAFPCNQFGAQEPGDNEQIQEFACTRFKAEFPIFDKVDVNGDNAAPLYKHLKSSKGGLFGDSIKWNFSKFLVDKEGNVVERYAPTTSPVSIEKDIKKLL 364
            T  +Y  L +L+ +       +LAFPC+Q+G  E G + +I+ FA + +   FPIF+K+ + G  A P ++ L  S   +     +WNF KFLV  EG VV  + P      I K+   L+
Sbjct:   83 TEQSYRALQELHRELGTSHFNVLAFPCSQYGDTESGTSREIEAFAKSNYGVTFPIFNKIKIMGSEAEPAFRFLTDSVQKI----PRWNFWKFLVSPEGQVVRFWKPEEPVSDIRKEATTLV 199          
BLAST of BQ623385 vs. ExPASy Swiss-Prot
Match: GPX5_MACFA (Epididymal secretory glutathione peroxidase OS=Macaca fascicularis GN=GPX5 PE=2 SV=1)

HSP 1 Score: 77.7962 bits (190), Expect = 1.907e-14
Identity = 50/140 (35.71%), Postives = 71/140 (50.71%), Query Frame = 2
Query:    8 SNYTELSQLYDKYKNQGLEILAFPCNQFGAQEPGDNEQI-QEFACTR----FKAEFPIFDKVDVNGDNAAPLYKHLKSS---KGGLFG------------DSIKWNFSKFLVDKEGNVVERYAPTTSPVSIEKDIKKLLE 367
            + Y EL+ L ++ K  GL +L FPCNQFG QEPGDN++I       R    F   F +F+K DVNG+    ++  LK S      + G              I+WNF KFLV  +G  V R++   +  S++ DI   L+
Sbjct:   77 AQYPELNALQEELKPYGLVVLGFPCNQFGKQEPGDNKEILPGLKYVRPGGGFVPNFQLFEKGDVNGEKEQKVFSFLKHSCPHPSEILGTFKSISWDPVKVHDIRWNFEKFLVGPDGIPVMRWSHRATVSSVKTDILAYLK 216          
BLAST of BQ623385 vs. ExPASy Swiss-Prot
Match: GPX5_HUMAN (Epididymal secretory glutathione peroxidase OS=Homo sapiens GN=GPX5 PE=1 SV=1)

HSP 1 Score: 77.7962 bits (190), Expect = 1.907e-14
Identity = 50/140 (35.71%), Postives = 71/140 (50.71%), Query Frame = 2
Query:    8 SNYTELSQLYDKYKNQGLEILAFPCNQFGAQEPGDNEQI-QEFACTR----FKAEFPIFDKVDVNGDNAAPLYKHLKSS---KGGLFG------------DSIKWNFSKFLVDKEGNVVERYAPTTSPVSIEKDIKKLLE 367
            + Y EL+ L ++ K  GL +L FPCNQFG QEPGDN++I       R    F   F +F+K DVNG+    ++  LK S      + G              I+WNF KFLV  +G  V R++   +  S++ DI   L+
Sbjct:   77 AQYPELNALQEELKPYGLVVLGFPCNQFGKQEPGDNKEILPGLKYVRPGGGFVPSFQLFEKGDVNGEKEQKVFSFLKHSCPHPSEILGTFKSISWDPVKVHDIRWNFEKFLVGPDGIPVMRWSHRATVSSVKTDILAYLK 216          
BLAST of BQ623385 vs. ExPASy Swiss-Prot
Match: GPX1_MACFU (Glutathione peroxidase 1 OS=Macaca fuscata fuscata GN=GPX1 PE=2 SV=3)

HSP 1 Score: 77.7962 bits (190), Expect = 1.907e-14
Identity = 49/145 (33.79%), Postives = 71/145 (48.97%), Query Frame = 2
Query:    2 TNSNYTELSQLYDKYKNQGLEILAFPCNQFGAQEPGDNEQI-QEFACTR----FKAEFPIFDKVDVNGDNAAPLYKHLKSSKGGLFGDS-------------------IKWNFSKFLVDKEGNVVERYAPTTSPVSIEKDIKKLL 364
            T  +YT++++L  +   +GL +L FPCNQFG QE   NE+I       R    F+  F +F+K +VNG  A PL+  L+ +      D+                   + WNF KFLV  +G  V RY+     + IE DI+ LL
Sbjct:   50 TVRDYTQMNELQRRLGPRGLVVLGFPCNQFGHQENAKNEEILNSLKYVRPGGGFEPNFMLFEKCEVNGAGAHPLFAFLREALPAPSDDATALMTDPKLIAWSPVCRNDVAWNFEKFLVGPDGVPVRRYSRRFQTIDIEPDIEALL 194          
BLAST of BQ623385 vs. ExPASy Swiss-Prot
Match: GPX2_PONPY (Glutathione peroxidase 2 OS=Pongo pygmaeus GN=GPX2 PE=2 SV=2)

HSP 1 Score: 77.411 bits (189), Expect = 2.490e-14
Identity = 47/148 (31.76%), Postives = 73/148 (49.32%), Query Frame = 2
Query:    2 TNSNYTELSQLYDKYKNQGLEILAFPCNQFGAQEPGDNEQIQEFAC-----TRFKAEFPIFDKVDVNGDNAAPLYKHLKSSKGGLFGD-------------------SIKWNFSKFLVDKEGNVVERYAPTTSPVSIEKDIKKLLETA 373
            T  ++T+L++L  ++  + L +L FPCNQFG QE   NE+I          + ++  F +  K +VNG N  P++ +LK      + D                    + WNF KFL+  EG    RY+ T   ++IE DIK+LL+ A
Sbjct:   43 TTRDFTQLNELQCRFPRR-LVVLGFPCNQFGHQENCQNEEILNSLKYVRPGSGYQPTFTLVQKCEVNGQNEHPVFAYLKDKLPYPYDDPFSLMTDPKLIIWSPVRRSDVAWNFEKFLIGPEGEPFRRYSRTFPTINIEPDIKRLLKVA 189          
BLAST of BQ623385 vs. ExPASy Swiss-Prot
Match: GPX2_MOUSE (Glutathione peroxidase 2 OS=Mus musculus GN=Gpx2 PE=2 SV=3)

HSP 1 Score: 77.411 bits (189), Expect = 2.490e-14
Identity = 48/148 (32.43%), Postives = 72/148 (48.65%), Query Frame = 2
Query:    2 TNSNYTELSQLYDKYKNQGLEILAFPCNQFGAQEPGDNEQI-QEFACTR----FKAEFPIFDKVDVNGDNAAPLYKHLKSSKGGLFGD-------------------SIKWNFSKFLVDKEGNVVERYAPTTSPVSIEKDIKKLLETA 373
            T  +Y +L++L  ++  + L +L FPCNQFG QE   NE+I       R    ++  F +  K DVNG N  P++ +LK      + D                    + WNF KFL+  EG    RY+ +   ++IE DIK+LL+ A
Sbjct:   43 TTRDYNQLNELQCRFPRR-LVVLGFPCNQFGHQENCQNEEILNSLKYVRPGGGYQPTFSLTQKCDVNGQNEHPVFAYLKDKLPYPYDDPFSLMTDPKLIIWSPVRRSDVSWNFEKFLIGPEGEPFRRYSRSFQTINIEPDIKRLLKVA 189          
BLAST of BQ623385 vs. ExPASy Swiss-Prot
Match: GPX2_HYLLA (Glutathione peroxidase 2 OS=Hylobates lar GN=GPX2 PE=2 SV=2)

HSP 1 Score: 77.411 bits (189), Expect = 2.490e-14
Identity = 48/148 (32.43%), Postives = 73/148 (49.32%), Query Frame = 2
Query:    2 TNSNYTELSQLYDKYKNQGLEILAFPCNQFGAQEPGDNEQI-QEFACTR----FKAEFPIFDKVDVNGDNAAPLYKHLKSSKGGLFGD-------------------SIKWNFSKFLVDKEGNVVERYAPTTSPVSIEKDIKKLLETA 373
            T  ++T+L++L  ++  + L +L FPCNQFG QE   NE+I       R    ++  F +  K +VNG N  P++ +LK      + D                    + WNF KFL+  EG    RY+ T   ++IE DIK+LL+ A
Sbjct:   43 TTRDFTQLNELQCRFPRR-LVVLGFPCNQFGHQENCQNEEILNSLKYVRPGGGYQPTFTLVQKCEVNGQNEHPVFAYLKDKLPYPYDDPFSLMTDPKLIIWSPVRRSDVAWNFEKFLIGPEGEPFRRYSRTFPTINIEPDIKRLLKVA 189          
BLAST of BQ623385 vs. ExPASy Swiss-Prot
Match: GPX2_HUMAN (Glutathione peroxidase 2 OS=Homo sapiens GN=GPX2 PE=1 SV=3)

HSP 1 Score: 77.411 bits (189), Expect = 2.490e-14
Identity = 48/148 (32.43%), Postives = 73/148 (49.32%), Query Frame = 2
Query:    2 TNSNYTELSQLYDKYKNQGLEILAFPCNQFGAQEPGDNEQI-QEFACTR----FKAEFPIFDKVDVNGDNAAPLYKHLKSSKGGLFGD-------------------SIKWNFSKFLVDKEGNVVERYAPTTSPVSIEKDIKKLLETA 373
            T  ++T+L++L  ++  + L +L FPCNQFG QE   NE+I       R    ++  F +  K +VNG N  P++ +LK      + D                    + WNF KFL+  EG    RY+ T   ++IE DIK+LL+ A
Sbjct:   43 TTRDFTQLNELQCRFPRR-LVVLGFPCNQFGHQENCQNEEILNSLKYVRPGGGYQPTFTLVQKCEVNGQNEHPVFAYLKDKLPYPYDDPFSLMTDPKLIIWSPVRRSDVAWNFEKFLIGPEGEPFRRYSRTFPTINIEPDIKRLLKVA 189          
BLAST of BQ623385 vs. ExPASy Swiss-Prot
Match: GPX1_BOVIN (Glutathione peroxidase 1 OS=Bos taurus GN=GPX1 PE=1 SV=3)

HSP 1 Score: 77.411 bits (189), Expect = 2.490e-14
Identity = 48/147 (32.65%), Postives = 72/147 (48.98%), Query Frame = 2
Query:    2 TNSNYTELSQLYDKYKNQGLEILAFPCNQFGAQEPGDNEQIQEFACTR-------FKAEFPIFDKVDVNGDNAAPLYKHLKS-------------------SKGGLFGDSIKWNFSKFLVDKEGNVVERYAPTTSPVSIEKDIKKLL 364
            T  +YT+++ L  +   +GL +L FPCNQFG QE   NE+I    C +       F+  F +F+K +VNG+ A PL+  L+                    +   +  + + WNF KFLV  +G  V RY+     + IE DI+ LL
Sbjct:   55 TVRDYTQMNDLQRRLGPRGLVVLGFPCNQFGHQENAKNEEI--LNCLKYVRPGGGFEPNFMLFEKCEVNGEKAHPLFAFLREVLPTPSDDATALMTDPKFITWSPVCRNDVSWNFEKFLVGPDGVPVRRYSRRFLTIDIEPDIETLL 199          
BLAST of BQ623385 vs. ExPASy Swiss-Prot
Match: GPX3_RAT (Glutathione peroxidase 3 OS=Rattus norvegicus GN=Gpx3 PE=2 SV=2)

HSP 1 Score: 77.0258 bits (188), Expect = 3.252e-14
Identity = 50/133 (37.59%), Postives = 68/133 (51.13%), Query Frame = 2
Query:   14 YTELSQLYDKYKNQGLEILAFPCNQFGAQEPGDNEQI-QEFACTR----FKAEFPIFDKVDVNGDNAAPLYKHLKS----------SKGGLFGD-----SIKWNFSKFLVDKEGNVVERYAPTTSPVSIEKDI 352
            Y EL+ L ++    GL IL FPCNQFG QEPG+N +I       R    F   F +F+K DVNG+     Y  LK+          S G LF +      I+WNF KFLV  +G  + R+   T+  +++ DI
Sbjct:   79 YLELNALQEELGPFGLVILGFPCNQFGKQEPGENSEILPSLKYVRPGGGFVPNFQLFEKGDVNGEKEQKFYTFLKNSCPPTAELLGSPGRLFWEPMKIHDIRWNFEKFLVGPDGIPIMRWYHRTTVSNVKMDI 211          
The following BLAST results are available for this feature:
BLAST of BQ623385 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 105
Match NameE-valueIdentityDescription
GPX8_DANRE8.559e-1533.88Probable glutathione peroxidase 8 OS=Danio rerio G... [more]
GPX5_MACFA1.907e-1435.71Epididymal secretory glutathione peroxidase OS=Mac... [more]
GPX5_HUMAN1.907e-1435.71Epididymal secretory glutathione peroxidase OS=Hom... [more]
GPX1_MACFU1.907e-1433.79Glutathione peroxidase 1 OS=Macaca fuscata fuscata... [more]
GPX2_PONPY2.490e-1431.76Glutathione peroxidase 2 OS=Pongo pygmaeus GN=GPX2... [more]
GPX2_MOUSE2.490e-1432.43Glutathione peroxidase 2 OS=Mus musculus GN=Gpx2 P... [more]
GPX2_HYLLA2.490e-1432.43Glutathione peroxidase 2 OS=Hylobates lar GN=GPX2 ... [more]
GPX2_HUMAN2.490e-1432.43Glutathione peroxidase 2 OS=Homo sapiens GN=GPX2 P... [more]
GPX1_BOVIN2.490e-1432.65Glutathione peroxidase 1 OS=Bos taurus GN=GPX1 PE=... [more]
GPX3_RAT3.252e-1437.59Glutathione peroxidase 3 OS=Rattus norvegicus GN=G... [more]

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Properties
Property NameValue
Genbank descriptionUSDA-FP_00476 Ridge pineapple sweet orange entire seedling Citrus sinensis cDNA clone USDA-FP_00476 5, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>BQ623385 ID=BQ623385; Name=BQ623385; organism=Citrus sinensis; type=EST; length=412bp
GACCAATTCAAACTACACTGAGCTGAGTCAGTTGTACGACAAGTACAAGA
ATCAAGGCTTGGAGATTCTGGCCTTTCCTTGTAATCAGTTTGGAGCTCAA
GAGCCAGGAGACAATGAACAGATTCAAGAATTTGCATGCACTCGCTTTAA
GGCTGAGTTTCCCATATTTGATAAGGTTGATGTTAATGGTGATAATGCTG
CTCCTTTATACAAGCATCTGAAATCCAGCAAAGGTGGACTTTTTGGAGAC
AGCATCAAGTGGAACTTTTCCAAGTTCTTGGTGGATAAGGAGGGGAATGT
TGTTGAGCGTTATGCCCCCACCACTAGCCCTGTGAGCATTGAGAAGGATA
TAAAGAAACTTTTGGAGACTGCTTAACCGCTGCTACAACTTGCATGATCA
GCTACTGGCTAT
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