BQ623385

Overview
NameBQ623385
Unique NameBQ623385
TypeEST
OrganismCitrus sinensis (Sweet orange)
Sequence length412
Libraries
Library NameType
Ridge pineapple sweet orange entire seedlingcdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Alignments
Feature NameTypeLocationAnalysis
Csv1_Contig2542 contig Csv1_Contig2542:360..771. BLAST: Citrus Unigene V1 Contigs to Prunus persica proteins V1
Homology
BLAST of BQ623385 vs. ExPASy Swiss-Prot
Match: GPX3_HYLLA (Glutathione peroxidase 3 OS=Hylobates lar GN=GPX3 PE=2 SV=2)

HSP 1 Score: 77.0258 bits (188), Expect = 3.252e-14
Identity = 50/133 (37.59%), Postives = 67/133 (50.38%), Query Frame = 2
Query:   14 YTELSQLYDKYKNQGLEILAFPCNQFGAQEPGDNEQI-QEFACTR----FKAEFPIFDKVDVNGDNAAPLYKHLKSS---KGGLFGDS------------IKWNFSKFLVDKEGNVVERYAPTTSPVSIEKDI 352
            Y EL+ L ++    GL IL FPCNQFG QEPG+N +I       R    F   F +F+K DVNG+     Y  LK+S      L G S            I+WNF KFLV  +G  + R+   T+  +++ DI
Sbjct:   79 YIELNALQEELAPFGLVILGFPCNQFGKQEPGENSEILPTLKYVRPGGGFVPNFQLFEKGDVNGEKEQKFYTFLKNSCPPTSELLGTSDRLFWEPMKVHDIRWNFEKFLVGPDGTPIMRWHHRTTVSNVKMDI 211          
BLAST of BQ623385 vs. ExPASy Swiss-Prot
Match: GPX3_CEBAP (Glutathione peroxidase 3 OS=Cebus apella GN=GPX3 PE=2 SV=2)

HSP 1 Score: 77.0258 bits (188), Expect = 3.252e-14
Identity = 50/133 (37.59%), Postives = 68/133 (51.13%), Query Frame = 2
Query:   14 YTELSQLYDKYKNQGLEILAFPCNQFGAQEPGDNEQI-QEFACTR----FKAEFPIFDKVDVNGDNAAPLYKHLKSS---KGGLFGDS------------IKWNFSKFLVDKEGNVVERYAPTTSPVSIEKDI 352
            Y EL+ L ++    GL++L FPCNQFG QEPG+N +I       R    F   F +F+K DVNG+     Y  LK+S      L G S            I+WNF KFLV  +G  V R+   T+  +++ DI
Sbjct:   79 YIELNALQEELAPFGLDLLGFPCNQFGKQEPGENSEILPSLKYVRPGGGFVPNFQLFEKGDVNGEKEQKFYTFLKNSCPPTSELLGTSDRLFWEPMKVHDIRWNFEKFLVGPDGIPVMRWHHRTTISNVKMDI 211          
BLAST of BQ623385 vs. ExPASy Swiss-Prot
Match: GPX3_BOVIN (Glutathione peroxidase 3 OS=Bos taurus GN=GPX3 PE=2 SV=2)

HSP 1 Score: 77.0258 bits (188), Expect = 3.252e-14
Identity = 50/135 (37.04%), Postives = 68/135 (50.37%), Query Frame = 2
Query:   14 YTELSQLYDKYKNQGLEILAFPCNQFGAQEPGDNEQIQEFACTR-------FKAEFPIFDKVDVNGDNAAPLYKHLKSS---KGGLFGD------------SIKWNFSKFLVDKEGNVVERYAPTTSPVSIEKDI 352
            Y EL+ L ++ +  GL IL FPCNQFG QEPG+N +I   A  +       F   F +F+K DVNG+     Y  LK+S      L G              I+WNF KFLV  +G  + R+   T+  S++ DI
Sbjct:   79 YVELNALQEELEPFGLVILGFPCNQFGKQEPGENSEI--LATLKYVRPGGGFTPNFQLFEKGDVNGEKEQKFYTFLKNSCPPTSELLGSPDRLFWEPMKVHDIRWNFEKFLVGPDGIPIMRWYHRTTVNSVKMDI 211          
BLAST of BQ623385 vs. ExPASy Swiss-Prot
Match: GPX6_RAT (Glutathione peroxidase 6 OS=Rattus norvegicus GN=Gpx6 PE=2 SV=1)

HSP 1 Score: 76.6406 bits (187), Expect = 4.248e-14
Identity = 51/139 (36.69%), Postives = 69/139 (49.64%), Query Frame = 2
Query:    8 SNYTELSQLYDKYKNQGLEILAFPCNQFGAQEPGDNEQI-QEFACTR----FKAEFPIFDKVDVNGDNAAPLYKHLKS----------SKGGLFGD-----SIKWNFSKFLVDKEGNVVERYAPTTSPVSIEKDIKKLL 364
            + Y EL+ L ++ +   + +L FPCNQFG QEPG N +I       R    F   F +F+K DVNGDN   ++  LKS          S   LF D      I+WNF KFLV  +G  V R+   T    ++ DI + L
Sbjct:   77 ATYPELNTLQEELRPFNVSVLGFPCNQFGKQEPGKNSEILLGLKYVRPGGGFVPNFQLFEKGDVNGDNEQKVFSFLKSSCPPTSELLGSPEHLFWDPMKVHDIRWNFEKFLVGPDGAPVMRWFHQTPVRVVQSDIMEYL 215          
BLAST of BQ623385 vs. ExPASy Swiss-Prot
Match: GPX1_PONPY (Glutathione peroxidase 1 OS=Pongo pygmaeus GN=GPX1 PE=2 SV=2)

HSP 1 Score: 76.6406 bits (187), Expect = 4.248e-14
Identity = 48/145 (33.10%), Postives = 71/145 (48.97%), Query Frame = 2
Query:    2 TNSNYTELSQLYDKYKNQGLEILAFPCNQFGAQEPGDNEQI-QEFACTR----FKAEFPIFDKVDVNGDNAAPLYKHLKSSKGGLFGDS-------------------IKWNFSKFLVDKEGNVVERYAPTTSPVSIEKDIKKLL 364
            T  +YT++++L  +   +GL +L FPCNQFG QE   NE+I       R    F+  F +F+K +VNG  A PL+  L+ +      D+                   + WNF KFLV  +G  + RY+     + IE DI+ LL
Sbjct:   50 TVRDYTQMNELQRRLGPRGLVVLGFPCNQFGHQENAKNEEILNSLKYVRPGGGFEPNFMLFEKCEVNGAGAHPLFAFLREALPAPSDDATALMTDPKLITWSPVCRNDVAWNFEKFLVGPDGVPLRRYSRRFQTIDIEPDIEALL 194          
BLAST of BQ623385 vs. ExPASy Swiss-Prot
Match: GPX1_HYLLA (Glutathione peroxidase 1 OS=Hylobates lar GN=GPX1 PE=2 SV=2)

HSP 1 Score: 76.6406 bits (187), Expect = 4.248e-14
Identity = 48/145 (33.10%), Postives = 71/145 (48.97%), Query Frame = 2
Query:    2 TNSNYTELSQLYDKYKNQGLEILAFPCNQFGAQEPGDNEQI-QEFACTR----FKAEFPIFDKVDVNGDNAAPLYKHLKSSKGGLFGDS-------------------IKWNFSKFLVDKEGNVVERYAPTTSPVSIEKDIKKLL 364
            T  +YT++++L  +   +GL +L FPCNQFG QE   NE+I       R    F+  F +F+K +VNG  A PL+  L+ +      D+                   + WNF KFLV  +G  + RY+     + IE DI+ LL
Sbjct:   50 TVRDYTQMNELQRRLGPRGLVVLGFPCNQFGHQENAKNEEILNSLKYVRPGGGFEPNFMLFEKCEVNGAGAHPLFAFLREALPAPSDDATALMTDPKLITWSPVCRNDVAWNFEKFLVGPDGVPLRRYSRRFQTIDIEPDIEALL 194          
BLAST of BQ623385 vs. ExPASy Swiss-Prot
Match: GPX1_HUMAN (Glutathione peroxidase 1 OS=Homo sapiens GN=GPX1 PE=1 SV=3)

HSP 1 Score: 76.6406 bits (187), Expect = 4.248e-14
Identity = 48/145 (33.10%), Postives = 71/145 (48.97%), Query Frame = 2
Query:    2 TNSNYTELSQLYDKYKNQGLEILAFPCNQFGAQEPGDNEQI-QEFACTR----FKAEFPIFDKVDVNGDNAAPLYKHLKSSKGGLFGDS-------------------IKWNFSKFLVDKEGNVVERYAPTTSPVSIEKDIKKLL 364
            T  +YT++++L  +   +GL +L FPCNQFG QE   NE+I       R    F+  F +F+K +VNG  A PL+  L+ +      D+                   + WNF KFLV  +G  + RY+     + IE DI+ LL
Sbjct:   50 TVRDYTQMNELQRRLGPRGLVVLGFPCNQFGHQENAKNEEILNSLKYVRPGGGFEPNFMLFEKCEVNGAGAHPLFAFLREALPAPSDDATALMTDPKLITWSPVCRNDVAWNFEKFLVGPDGVPLRRYSRRFQTIDIEPDIEALL 194          
BLAST of BQ623385 vs. ExPASy Swiss-Prot
Match: GPX6_MOUSE (Glutathione peroxidase 6 OS=Mus musculus GN=Gpx6 PE=2 SV=1)

HSP 1 Score: 75.8702 bits (185), Expect = 7.245e-14
Identity = 50/139 (35.97%), Postives = 69/139 (49.64%), Query Frame = 2
Query:    8 SNYTELSQLYDKYKNQGLEILAFPCNQFGAQEPGDNEQI-QEFACTR----FKAEFPIFDKVDVNGDNAAPLYKHLKSS---KGGLFGD------------SIKWNFSKFLVDKEGNVVERYAPTTSPVSIEKDIKKLL 364
            + Y EL+ L ++ K   + +L FPCNQFG QEPG N +I       R    +   F +F+K DVNGDN   ++  LK+S      LFG              I+WNF KFLV  +G  V R+   T    ++ DI + L
Sbjct:   77 ATYPELNTLQEELKPFNVTVLGFPCNQFGKQEPGKNSEILLGLKYVRPGGGYVPNFQLFEKGDVNGDNEQKVFSFLKNSCPPTSELFGSPEHLFWDPMKIHDIRWNFEKFLVGPDGVPVMRWFHHTPVRIVQSDIMEYL 215          
BLAST of BQ623385 vs. ExPASy Swiss-Prot
Match: GPX3_PONPY (Glutathione peroxidase 3 OS=Pongo pygmaeus GN=GPX3 PE=2 SV=3)

HSP 1 Score: 75.8702 bits (185), Expect = 7.245e-14
Identity = 50/133 (37.59%), Postives = 67/133 (50.38%), Query Frame = 2
Query:   14 YTELSQLYDKYKNQGLEILAFPCNQFGAQEPGDNEQI-QEFACTR----FKAEFPIFDKVDVNGDNAAPLYKHLKSS---KGGLFGDS------------IKWNFSKFLVDKEGNVVERYAPTTSPVSIEKDI 352
            Y EL+ L ++    GL IL FPCNQFG QEPG+N +I       R    F   F +F+K DVNG+     Y  LK+S      L G S            I+WNF KFLV  +G  + R+   T+  +++ DI
Sbjct:   79 YIELNALQEELAPFGLVILGFPCNQFGKQEPGENSEILPTLKYVRPGGGFVPNFQLFEKGDVNGEKEQKFYTFLKNSCPPTSELLGTSDRLFWEPMKVHDIRWNFEKFLVGPDGIPIMRWHHRTTVSNVKMDI 211          
BLAST of BQ623385 vs. ExPASy Swiss-Prot
Match: GPX3_HUMAN (Glutathione peroxidase 3 OS=Homo sapiens GN=GPX3 PE=1 SV=2)

HSP 1 Score: 75.8702 bits (185), Expect = 7.245e-14
Identity = 50/133 (37.59%), Postives = 67/133 (50.38%), Query Frame = 2
Query:   14 YTELSQLYDKYKNQGLEILAFPCNQFGAQEPGDNEQI-QEFACTR----FKAEFPIFDKVDVNGDNAAPLYKHLKSS---KGGLFGDS------------IKWNFSKFLVDKEGNVVERYAPTTSPVSIEKDI 352
            Y EL+ L ++    GL IL FPCNQFG QEPG+N +I       R    F   F +F+K DVNG+     Y  LK+S      L G S            I+WNF KFLV  +G  + R+   T+  +++ DI
Sbjct:   79 YIELNALQEELAPFGLVILGFPCNQFGKQEPGENSEILPTLKYVRPGGGFVPNFQLFEKGDVNGEKEQKFYTFLKNSCPPTSELLGTSDRLFWEPMKVHDIRWNFEKFLVGPDGIPIMRWHHRTTVSNVKMDI 211          
The following BLAST results are available for this feature:
BLAST of BQ623385 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 105
Match NameE-valueIdentityDescription
GPX3_HYLLA3.252e-1437.59Glutathione peroxidase 3 OS=Hylobates lar GN=GPX3 ... [more]
GPX3_CEBAP3.252e-1437.59Glutathione peroxidase 3 OS=Cebus apella GN=GPX3 P... [more]
GPX3_BOVIN3.252e-1437.04Glutathione peroxidase 3 OS=Bos taurus GN=GPX3 PE=... [more]
GPX6_RAT4.248e-1436.69Glutathione peroxidase 6 OS=Rattus norvegicus GN=G... [more]
GPX1_PONPY4.248e-1433.10Glutathione peroxidase 1 OS=Pongo pygmaeus GN=GPX1... [more]
GPX1_HYLLA4.248e-1433.10Glutathione peroxidase 1 OS=Hylobates lar GN=GPX1 ... [more]
GPX1_HUMAN4.248e-1433.10Glutathione peroxidase 1 OS=Homo sapiens GN=GPX1 P... [more]
GPX6_MOUSE7.245e-1435.97Glutathione peroxidase 6 OS=Mus musculus GN=Gpx6 P... [more]
GPX3_PONPY7.245e-1437.59Glutathione peroxidase 3 OS=Pongo pygmaeus GN=GPX3... [more]
GPX3_HUMAN7.245e-1437.59Glutathione peroxidase 3 OS=Homo sapiens GN=GPX3 P... [more]

Pages

back to top
Properties
Property NameValue
Genbank descriptionUSDA-FP_00476 Ridge pineapple sweet orange entire seedling Citrus sinensis cDNA clone USDA-FP_00476 5, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>BQ623385 ID=BQ623385; Name=BQ623385; organism=Citrus sinensis; type=EST; length=412bp
GACCAATTCAAACTACACTGAGCTGAGTCAGTTGTACGACAAGTACAAGA
ATCAAGGCTTGGAGATTCTGGCCTTTCCTTGTAATCAGTTTGGAGCTCAA
GAGCCAGGAGACAATGAACAGATTCAAGAATTTGCATGCACTCGCTTTAA
GGCTGAGTTTCCCATATTTGATAAGGTTGATGTTAATGGTGATAATGCTG
CTCCTTTATACAAGCATCTGAAATCCAGCAAAGGTGGACTTTTTGGAGAC
AGCATCAAGTGGAACTTTTCCAAGTTCTTGGTGGATAAGGAGGGGAATGT
TGTTGAGCGTTATGCCCCCACCACTAGCCCTGTGAGCATTGAGAAGGATA
TAAAGAAACTTTTGGAGACTGCTTAACCGCTGCTACAACTTGCATGATCA
GCTACTGGCTAT
back to top