BQ623385

Overview
NameBQ623385
Unique NameBQ623385
TypeEST
OrganismCitrus sinensis (Sweet orange)
Sequence length412
Libraries
Library NameType
Ridge pineapple sweet orange entire seedlingcdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Alignments
Feature NameTypeLocationAnalysis
Csv1_Contig2542 contig Csv1_Contig2542:360..771. BLAST: Citrus Unigene V1 Contigs to Prunus persica proteins V1
Homology
BLAST of BQ623385 vs. ExPASy Swiss-Prot
Match: GPX2_CEBAP (Glutathione peroxidase 2 OS=Cebus apella GN=GPX2 PE=2 SV=2)

HSP 1 Score: 75.8702 bits (185), Expect = 7.245e-14
Identity = 48/148 (32.43%), Postives = 72/148 (48.65%), Query Frame = 2
Query:    2 TNSNYTELSQLYDKYKNQGLEILAFPCNQFGAQEPGDNEQI-QEFACTR----FKAEFPIFDKVDVNGDNAAPLYKHLKSSKGGLFGD-------------------SIKWNFSKFLVDKEGNVVERYAPTTSPVSIEKDIKKLLETA 373
            T  ++T+L++L  ++  + L +L FPCNQFG QE   NE+I       R    ++  F +  K +VNG N  P++ +LK        D                    + WNF KFL+  EG    RY+ T   ++IE DIK+LL+ A
Sbjct:   43 TTRDFTQLNELQCRFPRR-LVVLGFPCNQFGHQENCQNEEILNSLKYVRPGGGYQPTFTLVQKCEVNGQNEHPVFAYLKDKLPYPHDDPFSLMTDPKFIIWSPVCRSDVAWNFEKFLIGPEGEPFRRYSRTFPTINIEPDIKRLLKVA 189          
BLAST of BQ623385 vs. ExPASy Swiss-Prot
Match: GPX1_PIG (Glutathione peroxidase 1 OS=Sus scrofa GN=GPX1 PE=2 SV=2)

HSP 1 Score: 75.8702 bits (185), Expect = 7.245e-14
Identity = 49/147 (33.33%), Postives = 72/147 (48.98%), Query Frame = 2
Query:    2 TNSNYTELSQLYDKYKNQGLEILAFPCNQFGAQEPGDNEQIQEFACTR-------FKAEFPIFDKVDVNGDNAAPLYKHLKSSKGGLFGDS-------------------IKWNFSKFLVDKEGNVVERYAPTTSPVSIEKDIKKLL 364
            T  +YT++++L  +   +GL +L FPCNQFG QE   N +I    C +       F+  F +F+K +VNG NA PL+  L+ +      D+                   I WNF KFLV  +G  + RY+     + IE DI+ LL
Sbjct:   55 TVRDYTQMNELQRRLGPRGLVVLGFPCNQFGHQENAKNGEI--LNCLKYVRPGGGFEPNFMLFEKCEVNGANAHPLFAFLREALPTPSDDATALMTDPKFITWSPVCRNDIAWNFEKFLVGPDGVPLRRYSRRFLTIDIEPDIEALL 199          
BLAST of BQ623385 vs. ExPASy Swiss-Prot
Match: GPX3_MACFU (Glutathione peroxidase 3 OS=Macaca fuscata fuscata GN=GPX3 PE=2 SV=2)

HSP 1 Score: 75.485 bits (184), Expect = 9.463e-14
Identity = 50/133 (37.59%), Postives = 67/133 (50.38%), Query Frame = 2
Query:   14 YTELSQLYDKYKNQGLEILAFPCNQFGAQEPGDNEQI-QEFACTR----FKAEFPIFDKVDVNGDNAAPLYKHLKSS---KGGLFGDS------------IKWNFSKFLVDKEGNVVERYAPTTSPVSIEKDI 352
            Y EL+ L ++    GL +L FPCNQFG QEPG+N +I       R    F   F +F+K DVNG+     Y  LK+S      L G S            I+WNF KFLV  +G  V R+   T+  +++ DI
Sbjct:   79 YIELNALQEELAPFGLVLLGFPCNQFGKQEPGENSEILPSLKYVRPGGGFVPNFQLFEKGDVNGEKEQKFYTFLKNSCPPTSELLGTSDRLFWEPMKVHDIRWNFEKFLVGPDGIPVMRWHHRTTISNVKMDI 211          
BLAST of BQ623385 vs. ExPASy Swiss-Prot
Match: GPX_MCV1 (Glutathione peroxidase OS=Molluscum contagiosum virus subtype 1 GN=GPX1 PE=3 SV=2)

HSP 1 Score: 75.0998 bits (183), Expect = 1.236e-13
Identity = 46/145 (31.72%), Postives = 68/145 (46.90%), Query Frame = 2
Query:    2 TNSNYTELSQLYDKYKNQGLEILAFPCNQFGAQEPGDNEQI-----QEFACTRFKAEFPIFDKVDVNGDNAAPLYKHLKSSKGGLFGD-------------------SIKWNFSKFLVDKEGNVVERYAPTTSPVSIEKDIKKLL 364
            T   YT++++L  +   +GL +L FPCNQFG QE   N +I            F+  F +F+K +VNG  A PL+  L+ +      D                    + WNF KFLV  +G  V RY+     +++E DI+ LL
Sbjct:   67 TVREYTQMNELQRRLGARGLVVLGFPCNQFGHQENAQNAEILPSLKHVRPGNGFEPNFMLFEKCEVNGARAHPLFAFLREALPAPSDDMSTLVSDPQLIAWSPVCRNDVAWNFEKFLVGADGTPVRRYSHRCQTLAVEPDIEALL 211          
BLAST of BQ623385 vs. ExPASy Swiss-Prot
Match: GPX8_TETNG (Probable glutathione peroxidase 8 OS=Tetraodon nigroviridis GN=gpx8 PE=3 SV=1)

HSP 1 Score: 75.0998 bits (183), Expect = 1.236e-13
Identity = 43/122 (35.25%), Postives = 64/122 (52.46%), Query Frame = 2
Query:    2 TNSNYTELSQLYDKYKNQGLEILAFPCNQFGAQEPGDNEQIQEFACTRFKAEFPIFDKVDVNGDNAAPLYKHLKSSKGGLFGDSIKWNFSKFLVDKEGNVVERYAPTTSPV-SIEKDIKKLL 364
            T SNY  L +L+ +       +LAFPC QFG  E G +   + FA   +   FP F ++ + G  A P ++ L  S   +     +WNF KFLV+ EG VV R+  T  P+ SI +++  L+
Sbjct:   83 TESNYRSLQELHRELGPSHFNVLAFPCAQFGETETGSSRDSEAFAKATYGVTFPFFSRIKIMGSEAEPAFRFLTDSVQKV----PRWNFWKFLVNPEGKVV-RFWRTDEPMESIRREVTALV 199          
BLAST of BQ623385 vs. ExPASy Swiss-Prot
Match: GPX1_RABIT (Glutathione peroxidase 1 OS=Oryctolagus cuniculus GN=GPX1 PE=2 SV=2)

HSP 1 Score: 74.3294 bits (181), Expect = 2.108e-13
Identity = 47/145 (32.41%), Postives = 70/145 (48.28%), Query Frame = 2
Query:    2 TNSNYTELSQLYDKYKNQGLEILAFPCNQFGAQEPGDNEQI-QEFACTR----FKAEFPIFDKVDVNGDNAAPLYKHLKSSKGGLFGD-------------------SIKWNFSKFLVDKEGNVVERYAPTTSPVSIEKDIKKLL 364
            T  +YT++++L ++   + L +L FPCNQFG QE   NE+I       R    F+  F +F K +VNG  A+PL+  L+ +      D                    + W+F KFLV  +G  V RY+     + IE DI+ LL
Sbjct:   49 TVRDYTQMNELQERLGPRALVVLGFPCNQFGHQENAKNEEILNSLKYVRPGGGFEPNFMLFQKCEVNGAKASPLFAFLREALPPPSDDPTALMTDPKFITWCPVCRNDVSWSFEKFLVGPDGVPVRRYSRRFPTIDIEPDIQALL 193          
BLAST of BQ623385 vs. ExPASy Swiss-Prot
Match: GPX5_PIG (Epididymal secretory glutathione peroxidase OS=Sus scrofa GN=GPX5 PE=1 SV=1)

HSP 1 Score: 73.9442 bits (180), Expect = 2.753e-13
Identity = 49/140 (35.00%), Postives = 69/140 (49.29%), Query Frame = 2
Query:    8 SNYTELSQLYDKYKNQGLEILAFPCNQFGAQEPGDNEQI-QEFACTR----FKAEFPIFDKVDVNGDNAAPLYKHLKSS---KGGLFGD------------SIKWNFSKFLVDKEGNVVERYAPTTSPVSIEKDIKKLLE 367
            + Y EL+ L ++ K  GL +L FPCNQFG QEPG+N +I       R    +   F +F+K DVNG+    ++  LK S      L G              I+WNF KFLV  +G  V R+   T   +++ DI   L+
Sbjct:   75 AQYPELNTLQEELKPFGLVVLGFPCNQFGKQEPGENSEILLGLKYVRPGGGYVPNFQLFEKGDVNGEKEQKVFTFLKHSCPHPSELIGSIGYISWEPIRVHDIRWNFEKFLVGPDGVPVMRWVHETPISTVKSDILAYLK 214          
BLAST of BQ623385 vs. ExPASy Swiss-Prot
Match: GPX3_MOUSE (Glutathione peroxidase 3 OS=Mus musculus GN=Gpx3 PE=2 SV=2)

HSP 1 Score: 73.559 bits (179), Expect = 3.596e-13
Identity = 50/133 (37.59%), Postives = 67/133 (50.38%), Query Frame = 2
Query:   14 YTELSQLYDKYKNQGLEILAFPCNQFGAQEPGDNEQI-QEFACTR----FKAEFPIFDKVDVNGDNAAPLYKHLKS----------SKGGLFGD-----SIKWNFSKFLVDKEGNVVERYAPTTSPVSIEKDI 352
            Y EL+ L ++    GL IL FP NQFG QEPG+N +I       R    F   F +F+K DVNG+     Y  LK+          S G LF +      I+WNF KFLV  +G  V R+   T+  +++ DI
Sbjct:   79 YLELNALQEELGPFGLVILGFPSNQFGKQEPGENSEILPSLKYVRPGGGFVPNFQLFEKGDVNGEKEQKFYTFLKNSCPPTAELLGSPGRLFWEPMKIHDIRWNFEKFLVGPDGIPVMRWYHRTTVSNVKMDI 211          
BLAST of BQ623385 vs. ExPASy Swiss-Prot
Match: GPX2_CALJA (Glutathione peroxidase 2 OS=Callithrix jacchus GN=GPX2 PE=2 SV=2)

HSP 1 Score: 73.559 bits (179), Expect = 3.596e-13
Identity = 47/148 (31.76%), Postives = 71/148 (47.97%), Query Frame = 2
Query:    2 TNSNYTELSQLYDKYKNQGLEILAFPCNQFGAQEPGDNEQI-QEFACTR----FKAEFPIFDKVDVNGDNAAPLYKHLKSSKGGLFGD-------------------SIKWNFSKFLVDKEGNVVERYAPTTSPVSIEKDIKKLLETA 373
            T  ++T+L++L  ++  + L +L FPC+QFG QE   NE+I       R    ++  F +  K +VNG N  P++ +LK        D                    + WNF KFL+  EG    RY+ T   ++IE DIK+LL  A
Sbjct:   43 TTRDFTQLNELQCRFPRR-LVVLGFPCHQFGHQENCQNEEILNSLKYVRPGGGYQPTFTLVQKCEVNGQNEHPVFAYLKDKLPYPHDDPFSLMTDPKLIIWSPVRRSDVAWNFEKFLIGPEGEPFRRYSRTFPTINIEPDIKRLLNVA 189          
BLAST of BQ623385 vs. ExPASy Swiss-Prot
Match: GPX1_PANTR (Glutathione peroxidase 1 OS=Pan troglodytes GN=GPX1 PE=2 SV=2)

HSP 1 Score: 73.559 bits (179), Expect = 3.596e-13
Identity = 47/145 (32.41%), Postives = 70/145 (48.28%), Query Frame = 2
Query:    2 TNSNYTELSQLYDKYKNQGLEILAFPCNQFGAQEPGDNEQI-QEFACTR----FKAEFPIFDKVDVNGDNAAPLYKHLKSSKGGLFGDS-------------------IKWNFSKFLVDKEGNVVERYAPTTSPVSIEKDIKKLL 364
            T  +YT++++L  +   +GL +L FPCNQFG QE   NE+I       R    F+  F +F+K +VNG  A  L+  L+ +      D+                   + WNF KFLV  +G  + RY+     + IE DI+ LL
Sbjct:   50 TVRDYTQMNELQRRLGPRGLVVLGFPCNQFGHQENAKNEEILNSLKYVRPGGGFEPNFMLFEKCEVNGAGAHTLFAFLREALPAPSDDATALMTDPKLITWSPVCRNDVAWNFEKFLVGPDGVPLRRYSRRFQTIDIEPDIEALL 194          
The following BLAST results are available for this feature:
BLAST of BQ623385 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 105
Match NameE-valueIdentityDescription
GPX2_CEBAP7.245e-1432.43Glutathione peroxidase 2 OS=Cebus apella GN=GPX2 P... [more]
GPX1_PIG7.245e-1433.33Glutathione peroxidase 1 OS=Sus scrofa GN=GPX1 PE=... [more]
GPX3_MACFU9.463e-1437.59Glutathione peroxidase 3 OS=Macaca fuscata fuscata... [more]
GPX_MCV11.236e-1331.72Glutathione peroxidase OS=Molluscum contagiosum vi... [more]
GPX8_TETNG1.236e-1335.25Probable glutathione peroxidase 8 OS=Tetraodon nig... [more]
GPX1_RABIT2.108e-1332.41Glutathione peroxidase 1 OS=Oryctolagus cuniculus ... [more]
GPX5_PIG2.753e-1335.00Epididymal secretory glutathione peroxidase OS=Sus... [more]
GPX3_MOUSE3.596e-1337.59Glutathione peroxidase 3 OS=Mus musculus GN=Gpx3 P... [more]
GPX2_CALJA3.596e-1331.76Glutathione peroxidase 2 OS=Callithrix jacchus GN=... [more]
GPX1_PANTR3.596e-1332.41Glutathione peroxidase 1 OS=Pan troglodytes GN=GPX... [more]

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Properties
Property NameValue
Genbank descriptionUSDA-FP_00476 Ridge pineapple sweet orange entire seedling Citrus sinensis cDNA clone USDA-FP_00476 5, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>BQ623385 ID=BQ623385; Name=BQ623385; organism=Citrus sinensis; type=EST; length=412bp
GACCAATTCAAACTACACTGAGCTGAGTCAGTTGTACGACAAGTACAAGA
ATCAAGGCTTGGAGATTCTGGCCTTTCCTTGTAATCAGTTTGGAGCTCAA
GAGCCAGGAGACAATGAACAGATTCAAGAATTTGCATGCACTCGCTTTAA
GGCTGAGTTTCCCATATTTGATAAGGTTGATGTTAATGGTGATAATGCTG
CTCCTTTATACAAGCATCTGAAATCCAGCAAAGGTGGACTTTTTGGAGAC
AGCATCAAGTGGAACTTTTCCAAGTTCTTGGTGGATAAGGAGGGGAATGT
TGTTGAGCGTTATGCCCCCACCACTAGCCCTGTGAGCATTGAGAAGGATA
TAAAGAAACTTTTGGAGACTGCTTAACCGCTGCTACAACTTGCATGATCA
GCTACTGGCTAT
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